EY685157

Overview
NameEY685157
Unique NameEY685157
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length940
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY685157 vs. ExPASy Swiss-Prot
Match: AMY3C_ORYSJ (Alpha-amylase isozyme 3C OS=Oryza sativa subsp. japonica GN=AMY1.7 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.920e-13
Identity = 37/73 (50.68%), Postives = 50/73 (68.49%), Query Frame = 2 
Query:  188 EILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSS-YGSEHLLKAL 397
            ++LFQGFNWES K    W+  L   V DI+ +G T VWLPP +HS AP+GY+P  LY L++S YG+   L++L
Sbjct:   27 QVLFQGFNWESWKKQGGWYNFLHSHVDDIAATGVTHVWLPPPSHSVAPQGYMPGRLYDLDASKYGTGAELRSL 99
[Close]
BLAST of EY685157 vs. ExPASy Swiss-Prot
Match: AMY3B_ORYSJ (Alpha-amylase isozyme 3B OS=Oryza sativa subsp. japonica GN=AMY1.6 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.814e-13
Identity = 37/73 (50.68%), Postives = 50/73 (68.49%), Query Frame = 2 
Query:  188 EILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSS-YGSEHLLKAL 397
            ++LFQGFNWES K    W+  L   V DI+ +G T VWLPP +HS AP+GY+P  LY L++S YG+   L++L
Sbjct:   27 QVLFQGFNWESWKKQGGWYNFLHGHVDDIAATGVTHVWLPPPSHSVAPQGYMPGRLYDLDASKYGTGAELRSL 99
[Close]
BLAST of EY685157 vs. ExPASy Swiss-Prot
Match: AMY2A_ORYSJ (Alpha-amylase isozyme 2A OS=Oryza sativa subsp. japonica GN=AMY2A PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.981e-13
Identity = 38/78 (48.72%), Postives = 52/78 (66.67%), Query Frame = 2 
Query:  173 IRNGREILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSS-YGSEHLLKAL 397
            + +G +ILFQGFNWES +    W+  L  KV DI  +G T VWLPP +HS + +GY+P  LY L++S YG+   LK+L
Sbjct:   18 LASGDKILFQGFNWESWRQSGGWYNLLMGKVDDIVAAGVTHVWLPPPSHSVSTQGYMPGRLYDLDASRYGTSMELKSL 95
[Close]
BLAST of EY685157 vs. ExPASy Swiss-Prot
Match: AMY2A_ORYSI (Alpha-amylase isozyme 2A OS=Oryza sativa subsp. indica GN=AMYC2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.981e-13
Identity = 38/78 (48.72%), Postives = 52/78 (66.67%), Query Frame = 2 
Query:  173 IRNGREILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSS-YGSEHLLKAL 397
            + +G +ILFQGFNWES +    W+  L  KV DI  +G T VWLPP +HS + +GY+P  LY L++S YG+   LK+L
Sbjct:   18 LASGDKILFQGFNWESWRQSGGWYNLLMGKVDDIVAAGVTHVWLPPPSHSVSTQGYMPGRLYDLDASRYGTSMELKSL 95
The following BLAST results are available for this feature:
BLAST of EY685157 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
AMY3C_ORYSJ2.920e-1350.68Alpha-amylase isozyme 3C OS=Oryza sativa subsp. ja... [more]
AMY3B_ORYSJ3.814e-1350.68Alpha-amylase isozyme 3B OS=Oryza sativa subsp. ja... [more]
AMY2A_ORYSJ4.981e-1348.72Alpha-amylase isozyme 2A OS=Oryza sativa subsp. ja... [more]
AMY2A_ORYSI4.981e-1348.72Alpha-amylase isozyme 2A OS=Oryza sativa subsp. in... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-010-E03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685157 ID=EY685157; Name=EY685157; organism=Citrus sinensis; type=EST; length=940bp
ATCGGCTAACGTATTAGCGCTAACCTACGCTGCGATCCCAACTTACTTTT
TTGATTATCTCGGTGCTTTATTTCCTGCGATCCAGCGTCAGACGGCTACC
CCTTGAGTTGATATGGATTACACGAGCAAGGGTTTTGATGAAACTAACCA
GCAAACTGATCTTGGTGCGGTTATACGCAATGGACGAGAAATTCTGTTTC
AGGGTTTCAATTGGGAGTCTTGCAAACATGATTGGTGGAGAAATTTAGAA
AGGAAAGTTCCCGACATTTCAAAATCTGGGTTCACATCAGTGTGGTTGCC
TCCTGCAACTCATTCCTTTGCACCTGAAGGTTACCTACCACAGAACCTTT
ATTCCCTTAATTCTTCATATGGCTCTGAACACCTGCTAAAAGCTTTGGGG
GGGGGAGATGAAACAGCACATAGTCAGGGCAATGGCTGACATAAATATCC
CATCATCGTGATGGCACTACCCCAGGGCATGGAGGAAAGGACCATCGATA
TCAAGGGTACACCGAAATACTGGGGGGAACCTGCCCATACATACTGAACC
GGAGGGCACGGCAGAGGCCAAAATGACGCAAGACTGCAAGGACACGAGAG
CTCATAGCGACACCCGGCGAACCCTGCAAACCGAAGAATACGCGAACGCC
AACCCGCGTCTTCACACTAACTGTGACACCCAAACAACTACACACATCGT
TCTAACACAACTCACGAGCACAACCTGCACCGCGGCAAGCGGGTCGAAAG
GCCGGCACACGCACGCGGCCGAAGCGGCACCAACGGCCGCCCACGCAGCC
GGGTCGCCGACGGAGCAAGCCAGGGGAGCACGCGACGGCACACCCGCAGG
CAAAACCGCATAACAATCGACACCTATGGCGACGCACACCGCGCCTCAGA
ACCACCCCGCCATGGCGGGGCCCCCAACACCACGCACTAC
back to top