EY685151

Overview
NameEY685151
Unique NameEY685151
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length974
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY685151_ssr475 microsatellite EY685151_ssr475:475..489. BLAST: Citrus ESTs to Prunus persica proteins V1
EY685151_ssr504 microsatellite EY685151_ssr504:504..518. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY685151 vs. ExPASy Swiss-Prot
Match: GRXS8_ORYSJ (Monothiol glutaredoxin-S8 OS=Oryza sativa subsp. japonica GN=GRXS8 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.399e-11
Identity = 39/109 (35.78%), Postives = 58/109 (53.21%), Query Frame = 1 
Query:  139 RIQRLISEHPVIIFSRSSCCMCHVMKTLFATIGVHPTVIELD------DHEISALPLVDHDESAHADSPRNPAPAPAVFIGGTCVGGLESLVALHIGGHLVPKLVEIGA 447
            R+ RL S+  V++FS+SSC M H +  L   +GV   V+ELD      D E +   ++    +A+          P VFIGG  VG  + +++LH+ G LVP L + GA
Sbjct:    3 RVTRLASQKAVVVFSKSSCGMSHAVTRLLRELGVDARVVELDEEPAGADMENALAGMLLAGTAANGGGRGRGVVVPTVFIGGRLVGSTDRVMSLHVAGGLVPLLRDAGA 111
The following BLAST results are available for this feature:
BLAST of EY685151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
GRXS8_ORYSJ8.399e-1135.78Monothiol glutaredoxin-S8 OS=Oryza sativa subsp. j... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-010-D07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685151 ID=EY685151; Name=EY685151; organism=Citrus sinensis; type=EST; length=974bp
CAAGAATCTGTTTCTACTTTCTATAGAGAGGAGATGCAAGGCCTAAGGCG
TTACCCAAACGACGTCGTCCACCTCGACCTCACCCCTCCCTCGTCAACCA
CTAACTTGTCCATCGACGGTGAAGAATCCTCGGAGGCAAGAATCCAACGC
CTGATATCCGAGCACCCGGTGATAATATTCAGCCGGTCGTCTTGCTGCAT
GTGCCACGTCATGAAAACGCTCTTCGCCACCATCGGGGTGCACCCTACCG
TCATCGAGCTCGATGATCACGAGATCTCAGCCCTCCCTCTTGTTGACCAT
GATGAGAGCGCTCACGCCGACTCCCCTCGTAATCCGGCGCCGGCGCCCGC
AGTCTTCATCGGCGGCACGTGCGTCGGTGGCCTCGAGTCCCTCGTCGCCC
TCCACATCGGCGGCCACCTCGTGCCCAAGCTTGTAGAAATTGGCGCTCTC
TGGGTATGATAATTATTAGTTACTTTATTATTATTATTACTATAATATAT
CAAAATAATAATAATAATAAATCTATTATTACTACTATTATTATTAGTAG
AATTAGAAAGGCACCCAATTCTGATTCTTATATATGTTATGTTAATTACT
TAGTTTGGGTTCTTAATTACTCCAGTGTTCTTTTAGGGTCTCTCTTTTCT
TATTGGAAGTGAACTTAAACTTTAGGAGATCAAAGGGAAAACAAAAAAAA
AAAAAAACTAAACCTTCTTTCCCTTTGGATGAATTGAGGAGGGGGCGGTT
AAAGAGAGTATGAGTTTGGAATACCTCGGAGAAAGGGCACAGCATACACG
CTATACATGCAACGCCCTAAATCCCAGCCCGACGGCCAGCCTGTTATCCT
AACCCTCCAGGATGGCGGGCGCCCCGTATCTCCCCAAAAACCAACAACAA
GCTCCAACAAACATATACAACACCAAGAATAAACACCAAAAAAAAAACAT
GCATGAACGTAACGAACACATAAC
back to top