EY685056

Overview
NameEY685056
Unique NameEY685056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length975
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY685056_ssr580 microsatellite EY685056_ssr580:580..591. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY685056 vs. ExPASy Swiss-Prot
Match: UBIQ_ACECL (Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.777e-30
Identity = 65/74 (87.84%), Postives = 70/74 (94.59%), Query Frame = 3 
Query:  264 MFGRTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDHQRLIFAGKHLEDGRALADYNIQKESTLHLVLRLRGG 485
            +F +TLTGKTITLEVESSDT++NVK+KIQDKEGIPPD QRLIFAGK LEDGR LADYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY685056 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYCR (Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.626e-30
Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = 3 
Query:  264 MFGRTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDHQRLIFAGKHLEDGRALADYNIQKESTLHLVLRLRGG 485
            +F +TLTGKTI LEVESSDTI+NVKAKIQDKEGIPPD QRLIFAGK LEDGR LADYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTIALEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY685056 vs. ExPASy Swiss-Prot
Match: UBIQ_ACACA (Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.626e-30
Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = 3 
Query:  264 MFGRTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDHQRLIFAGKHLEDGRALADYNIQKESTLHLVLRLRGG 485
            +F +TLTGKTITLEVESSDTI+NVK KIQDKEGIPPD QRLIFAGK LEDGR LADYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVESSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY685056 vs. ExPASy Swiss-Prot
Match: UBIQ_GEOCY (Ubiquitin OS=Geodia cydonium PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.736e-30
Identity = 65/74 (87.84%), Postives = 70/74 (94.59%), Query Frame = 3 
Query:  264 MFGRTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDHQRLIFAGKHLEDGRALADYNIQKESTLHLVLRLRGG 485
            +F +TLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPD QRLIFAGK LEDGR L+DYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY685056 vs. ExPASy Swiss-Prot
Match: UBIQ_CAEEL (Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.736e-30
Identity = 65/74 (87.84%), Postives = 70/74 (94.59%), Query Frame = 3 
Query:  264 MFGRTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDHQRLIFAGKHLEDGRALADYNIQKESTLHLVLRLRGG 485
            +F +TLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPD QRLIFAGK LEDGR L+DYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY685056 vs. ExPASy Swiss-Prot
Match: UBIQ_EUPEU (Ubiquitin OS=Euplotes eurystomus PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 6.185e-30
Identity = 65/74 (87.84%), Postives = 68/74 (91.89%), Query Frame = 3 
Query:  264 MFGRTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDHQRLIFAGKHLEDGRALADYNIQKESTLHLVLRLRGG 485
            +F +TLTGKTITL+VE SDTIDNVK KIQDKEGIPPD QRLIFAGK LEDGR LADYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLDVEQSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY685056 vs. ExPASy Swiss-Prot
Match: UBIQ_AGLNE (Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 6.185e-30
Identity = 65/74 (87.84%), Postives = 69/74 (93.24%), Query Frame = 3 
Query:  264 MFGRTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDHQRLIFAGKHLEDGRALADYNIQKESTLHLVLRLRGG 485
            +F +TLTGKTITLEVESSDTI+NVK KIQDKEGIPPD QRLIFAGK LEDGR L+DYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY685056 vs. ExPASy Swiss-Prot
Match: UBIQ_XENLA (Ubiquitin OS=Xenopus laevis PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 8.078e-30
Identity = 65/74 (87.84%), Postives = 69/74 (93.24%), Query Frame = 3 
Query:  264 MFGRTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDHQRLIFAGKHLEDGRALADYNIQKESTLHLVLRLRGG 485
            +F +TLTGKTITLEVE SDTI+NVKAKIQDKEGIPPD QRLIFAGK LEDGR L+DYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY685056 vs. ExPASy Swiss-Prot
Match: UBIQ_SPOFR (Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 8.078e-30
Identity = 65/74 (87.84%), Postives = 69/74 (93.24%), Query Frame = 3 
Query:  264 MFGRTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDHQRLIFAGKHLEDGRALADYNIQKESTLHLVLRLRGG 485
            +F +TLTGKTITLEVE SDTI+NVKAKIQDKEGIPPD QRLIFAGK LEDGR L+DYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY685056 vs. ExPASy Swiss-Prot
Match: UBIQ_RAT (Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 8.078e-30
Identity = 65/74 (87.84%), Postives = 69/74 (93.24%), Query Frame = 3 
Query:  264 MFGRTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDHQRLIFAGKHLEDGRALADYNIQKESTLHLVLRLRGG 485
            +F +TLTGKTITLEVE SDTI+NVKAKIQDKEGIPPD QRLIFAGK LEDGR L+DYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of EY685056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
UBIQ_ACECL2.777e-3087.84Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1[more]
UBIQ_TRYCR3.626e-3089.19Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1[more]
UBIQ_ACACA3.626e-3089.19Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1[more]
UBIQ_GEOCY4.736e-3087.84Ubiquitin OS=Geodia cydonium PE=3 SV=1[more]
UBIQ_CAEEL4.736e-3087.84Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 ... [more]
UBIQ_EUPEU6.185e-3087.84Ubiquitin OS=Euplotes eurystomus PE=3 SV=1[more]
UBIQ_AGLNE6.185e-3087.84Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1[more]
UBIQ_XENLA8.078e-3087.84Ubiquitin OS=Xenopus laevis PE=1 SV=1[more]
UBIQ_SPOFR8.078e-3087.84Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1[more]
UBIQ_RAT8.078e-3087.84Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-008-C01-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685056 ID=EY685056; Name=EY685056; organism=Citrus sinensis; type=EST; length=975bp
CCACGCGTCCGGTCAAACTCAACCATGGGCACCTTTTTGGCAAATTCGAC
CGGGAAAAACGACCCTGTCGAGCTTGACTCTACCCACACTTTGTGAAATG
ACTTGGCAGGTATACAATACGAGGAAGGCATGACACCGCGAACAGCGAAA
TACCGCTACTTTTAACATTATTTTACTAATTCCGGGACTCCGTAGGCGGA
TGACCTGCCCCTCATTGAGGACACTCTGCCCCCCCTCCTCCGTCTCCCCG
GGGGGATAGCACAATGTTCGGCAGGACTCTGACCGGGAAGACGATCACCC
TGGAGGTGGAGAGCTCCGACACGATCGACAACGTGAAGGCGAAGATCCAG
GACAAGGAAGGGATCCCCCCGGACCACCAGAGGCTCATCTTCGCCGGCAA
GCACCTGGAGGACGGGCGCGCCCTGGCCGATTATAACATCCAGAAGGAAT
CCACCCTCCACCTTGTGTTGCGCCTGAGGGGAGGAATGCCCATCTTCGAC
AAGACAGTTGACCGGGAACACCACTACCCTGCAGGCGGAGAGCCCCGACC
TCACCCACCACCACACAGCCCAGATCCGCGCAGGCAGGCAGAACCGCCCC
AATCCCCGCTCACGGATCTCCAAGGGGGCGCAGCCCCACCGCTCGCATCC
ACACTCGGGCCCCACGACCCGAACCAAGCCCCGACACTGACCCCCGCCGA
ACGCCAGGTCAGAGACATGCGCACAAGAGCCGCCGCGAGCTCAAACATCG
TCTGCCCAGCCAGCACCGCCCGATAATACGCCGCCCTCCCACTCCCCAGC
GATACCGCAACCTCCCCCGCAGCCCCGCACCTCAACCCCACCCGCAACAT
CTATTCCTCTAGTTGGAATATAAGAAGAAAGAACCCCAAATCCACGTGCC
TCAACCCCCAACACTTCAAATACTCACAAGCATCACACACCCCACCGACC
CCCCCCCCCCATCCCCCCACCCGCC
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