EY685056

Overview
NameEY685056
Unique NameEY685056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length975
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY685056_ssr580 microsatellite EY685056_ssr580:580..591. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY685056 vs. ExPASy Swiss-Prot
Match: UBIQ_HUMAN (Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 8.078e-30
Identity = 65/74 (87.84%), Postives = 69/74 (93.24%), Query Frame = 3 
Query:  264 MFGRTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDHQRLIFAGKHLEDGRALADYNIQKESTLHLVLRLRGG 485
            +F +TLTGKTITLEVE SDTI+NVKAKIQDKEGIPPD QRLIFAGK LEDGR L+DYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY685056 vs. ExPASy Swiss-Prot
Match: UBIQ_HORSE (Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 8.078e-30
Identity = 65/74 (87.84%), Postives = 69/74 (93.24%), Query Frame = 3 
Query:  264 MFGRTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDHQRLIFAGKHLEDGRALADYNIQKESTLHLVLRLRGG 485
            +F +TLTGKTITLEVE SDTI+NVKAKIQDKEGIPPD QRLIFAGK LEDGR L+DYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY685056 vs. ExPASy Swiss-Prot
Match: UBIQ_GORGO (Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 8.078e-30
Identity = 65/74 (87.84%), Postives = 69/74 (93.24%), Query Frame = 3 
Query:  264 MFGRTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDHQRLIFAGKHLEDGRALADYNIQKESTLHLVLRLRGG 485
            +F +TLTGKTITLEVE SDTI+NVKAKIQDKEGIPPD QRLIFAGK LEDGR L+DYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY685056 vs. ExPASy Swiss-Prot
Match: UBIQ_FELCA (Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 8.078e-30
Identity = 65/74 (87.84%), Postives = 69/74 (93.24%), Query Frame = 3 
Query:  264 MFGRTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDHQRLIFAGKHLEDGRALADYNIQKESTLHLVLRLRGG 485
            +F +TLTGKTITLEVE SDTI+NVKAKIQDKEGIPPD QRLIFAGK LEDGR L+DYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY685056 vs. ExPASy Swiss-Prot
Match: UBIQ_DROME (Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 8.078e-30
Identity = 65/74 (87.84%), Postives = 69/74 (93.24%), Query Frame = 3 
Query:  264 MFGRTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDHQRLIFAGKHLEDGRALADYNIQKESTLHLVLRLRGG 485
            +F +TLTGKTITLEVE SDTI+NVKAKIQDKEGIPPD QRLIFAGK LEDGR L+DYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY685056 vs. ExPASy Swiss-Prot
Match: UBIQ_CRIGR (Ubiquitin OS=Cricetulus griseus PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 8.078e-30
Identity = 65/74 (87.84%), Postives = 69/74 (93.24%), Query Frame = 3 
Query:  264 MFGRTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDHQRLIFAGKHLEDGRALADYNIQKESTLHLVLRLRGG 485
            +F +TLTGKTITLEVE SDTI+NVKAKIQDKEGIPPD QRLIFAGK LEDGR L+DYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY685056 vs. ExPASy Swiss-Prot
Match: UBIQ_CHICK (Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 8.078e-30
Identity = 65/74 (87.84%), Postives = 69/74 (93.24%), Query Frame = 3 
Query:  264 MFGRTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDHQRLIFAGKHLEDGRALADYNIQKESTLHLVLRLRGG 485
            +F +TLTGKTITLEVE SDTI+NVKAKIQDKEGIPPD QRLIFAGK LEDGR L+DYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY685056 vs. ExPASy Swiss-Prot
Match: UBIQ_CERCA (Ubiquitin OS=Ceratitis capitata PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 8.078e-30
Identity = 65/74 (87.84%), Postives = 69/74 (93.24%), Query Frame = 3 
Query:  264 MFGRTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDHQRLIFAGKHLEDGRALADYNIQKESTLHLVLRLRGG 485
            +F +TLTGKTITLEVE SDTI+NVKAKIQDKEGIPPD QRLIFAGK LEDGR L+DYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY685056 vs. ExPASy Swiss-Prot
Match: UBIQ_CAVPO (Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 8.078e-30
Identity = 65/74 (87.84%), Postives = 69/74 (93.24%), Query Frame = 3 
Query:  264 MFGRTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDHQRLIFAGKHLEDGRALADYNIQKESTLHLVLRLRGG 485
            +F +TLTGKTITLEVE SDTI+NVKAKIQDKEGIPPD QRLIFAGK LEDGR L+DYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of EY685056 vs. ExPASy Swiss-Prot
Match: UBIQ_CANFA (Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 8.078e-30
Identity = 65/74 (87.84%), Postives = 69/74 (93.24%), Query Frame = 3 
Query:  264 MFGRTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDHQRLIFAGKHLEDGRALADYNIQKESTLHLVLRLRGG 485
            +F +TLTGKTITLEVE SDTI+NVKAKIQDKEGIPPD QRLIFAGK LEDGR L+DYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of EY685056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
UBIQ_HUMAN8.078e-3087.84Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1[more]
UBIQ_HORSE8.078e-3087.84Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2[more]
UBIQ_GORGO8.078e-3087.84Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 S... [more]
UBIQ_FELCA8.078e-3087.84Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1[more]
UBIQ_DROME8.078e-3087.84Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1... [more]
UBIQ_CRIGR8.078e-3087.84Ubiquitin OS=Cricetulus griseus PE=3 SV=1[more]
UBIQ_CHICK8.078e-3087.84Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1[more]
UBIQ_CERCA8.078e-3087.84Ubiquitin OS=Ceratitis capitata PE=1 SV=1[more]
UBIQ_CAVPO8.078e-3087.84Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1[more]
UBIQ_CANFA8.078e-3087.84Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-008-C01-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685056 ID=EY685056; Name=EY685056; organism=Citrus sinensis; type=EST; length=975bp
CCACGCGTCCGGTCAAACTCAACCATGGGCACCTTTTTGGCAAATTCGAC
CGGGAAAAACGACCCTGTCGAGCTTGACTCTACCCACACTTTGTGAAATG
ACTTGGCAGGTATACAATACGAGGAAGGCATGACACCGCGAACAGCGAAA
TACCGCTACTTTTAACATTATTTTACTAATTCCGGGACTCCGTAGGCGGA
TGACCTGCCCCTCATTGAGGACACTCTGCCCCCCCTCCTCCGTCTCCCCG
GGGGGATAGCACAATGTTCGGCAGGACTCTGACCGGGAAGACGATCACCC
TGGAGGTGGAGAGCTCCGACACGATCGACAACGTGAAGGCGAAGATCCAG
GACAAGGAAGGGATCCCCCCGGACCACCAGAGGCTCATCTTCGCCGGCAA
GCACCTGGAGGACGGGCGCGCCCTGGCCGATTATAACATCCAGAAGGAAT
CCACCCTCCACCTTGTGTTGCGCCTGAGGGGAGGAATGCCCATCTTCGAC
AAGACAGTTGACCGGGAACACCACTACCCTGCAGGCGGAGAGCCCCGACC
TCACCCACCACCACACAGCCCAGATCCGCGCAGGCAGGCAGAACCGCCCC
AATCCCCGCTCACGGATCTCCAAGGGGGCGCAGCCCCACCGCTCGCATCC
ACACTCGGGCCCCACGACCCGAACCAAGCCCCGACACTGACCCCCGCCGA
ACGCCAGGTCAGAGACATGCGCACAAGAGCCGCCGCGAGCTCAAACATCG
TCTGCCCAGCCAGCACCGCCCGATAATACGCCGCCCTCCCACTCCCCAGC
GATACCGCAACCTCCCCCGCAGCCCCGCACCTCAACCCCACCCGCAACAT
CTATTCCTCTAGTTGGAATATAAGAAGAAAGAACCCCAAATCCACGTGCC
TCAACCCCCAACACTTCAAATACTCACAAGCATCACACACCCCACCGACC
CCCCCCCCCCATCCCCCCACCCGCC
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