EY685056

Overview
NameEY685056
Unique NameEY685056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length975
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685056 vs. ExPASy Swiss-Prot
Match: RUB2_ARATH (NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN=RUB2 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.024e-16
Identity = 40/72 (55.56%), Postives = 54/72 (75.00%), Query Frame = 3
Query:  273 RTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDHQRLIFAGKHLEDGRALADYNIQKESTLHLVLRLRGGM 488
            +TLTGK I +++E +DTID +K ++++KEGIPP  QRLI+AGK L D +   DY I+  S LHLVL LRGG+
Sbjct:    6 KTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLVLALRGGL 77          
BLAST of EY685056 vs. ExPASy Swiss-Prot
Match: NEDD8_CAEEL (NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.747e-16
Identity = 39/71 (54.93%), Postives = 52/71 (73.24%), Query Frame = 3
Query:  273 RTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDHQRLIFAGKHLEDGRALADYNIQKESTLHLVLRLRGG 485
            +TLTGK I L++E +D ++ +K K+++KEGIPP  QRLIFAGK + D +  ADY +   S LHLVL LRGG
Sbjct:    6 KTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLVLALRGG 76          
BLAST of EY685056 vs. ExPASy Swiss-Prot
Match: RUB3_ORYSJ (NEDD8-like protein RUB3 OS=Oryza sativa subsp. japonica GN=RUB3 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.892e-16
Identity = 38/71 (53.52%), Postives = 52/71 (73.24%), Query Frame = 3
Query:  273 RTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDHQRLIFAGKHLEDGRALADYNIQKESTLHLVLRLRGG 485
            RTLTGK I +++E +DT+D +K +++++EGIPP  QRLI+ GK L D +   DY I+  S LHLVL LRGG
Sbjct:    6 RTLTGKEIDIDIEMTDTVDRIKERVEEREGIPPVQQRLIYGGKQLADDKTAHDYKIEAGSVLHLVLALRGG 76          
BLAST of EY685056 vs. ExPASy Swiss-Prot
Match: RUB3_ARATH (NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN=RUB3 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.932e-15
Identity = 37/71 (52.11%), Postives = 52/71 (73.24%), Query Frame = 3
Query:  273 RTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDHQRLIFAGKHLEDGRALADYNIQKESTLHLVLRLRGG 485
            +TLT K I +E+E +DTI+ +K +I++KEGIPP HQR+++ GK L D      YN+++ S LHLVL LRGG
Sbjct:    6 KTLTEKQIDIEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGG 76          
BLAST of EY685056 vs. ExPASy Swiss-Prot
Match: NEDD8_RAT (NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.523e-15
Identity = 36/71 (50.70%), Postives = 52/71 (73.24%), Query Frame = 3
Query:  273 RTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDHQRLIFAGKHLEDGRALADYNIQKESTLHLVLRLRGG 485
            +TLTGK I +++E +D ++ +K ++++KEGIPP  QRLI++GK + D +  ADY I   S LHLVL LRGG
Sbjct:    6 KTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of EY685056 vs. ExPASy Swiss-Prot
Match: NEDD8_RABIT (NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.523e-15
Identity = 36/71 (50.70%), Postives = 52/71 (73.24%), Query Frame = 3
Query:  273 RTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDHQRLIFAGKHLEDGRALADYNIQKESTLHLVLRLRGG 485
            +TLTGK I +++E +D ++ +K ++++KEGIPP  QRLI++GK + D +  ADY I   S LHLVL LRGG
Sbjct:    6 KTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of EY685056 vs. ExPASy Swiss-Prot
Match: NEDD8_MOUSE (NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.523e-15
Identity = 36/71 (50.70%), Postives = 52/71 (73.24%), Query Frame = 3
Query:  273 RTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDHQRLIFAGKHLEDGRALADYNIQKESTLHLVLRLRGG 485
            +TLTGK I +++E +D ++ +K ++++KEGIPP  QRLI++GK + D +  ADY I   S LHLVL LRGG
Sbjct:    6 KTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of EY685056 vs. ExPASy Swiss-Prot
Match: NEDD8_HUMAN (NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.523e-15
Identity = 36/71 (50.70%), Postives = 52/71 (73.24%), Query Frame = 3
Query:  273 RTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDHQRLIFAGKHLEDGRALADYNIQKESTLHLVLRLRGG 485
            +TLTGK I +++E +D ++ +K ++++KEGIPP  QRLI++GK + D +  ADY I   S LHLVL LRGG
Sbjct:    6 KTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of EY685056 vs. ExPASy Swiss-Prot
Match: NEDD8_BOVIN (NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.523e-15
Identity = 36/71 (50.70%), Postives = 52/71 (73.24%), Query Frame = 3
Query:  273 RTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDHQRLIFAGKHLEDGRALADYNIQKESTLHLVLRLRGG 485
            +TLTGK I +++E +D ++ +K ++++KEGIPP  QRLI++GK + D +  ADY I   S LHLVL LRGG
Sbjct:    6 KTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of EY685056 vs. ExPASy Swiss-Prot
Match: NEDD8_DICDI (NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 7.341e-15
Identity = 35/72 (48.61%), Postives = 53/72 (73.61%), Query Frame = 3
Query:  273 RTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDHQRLIFAGKHLEDGRALADYNIQKESTLHLVLRLRGGM 488
            +TLTGK I ++++ +D I  +K ++++KEGIPP  QRLIF GK + D +  ++Y+I+  S LHLVL LRGG+
Sbjct:    6 KTLTGKEIEIDIDPTDKIQRIKERVEEKEGIPPSQQRLIFGGKQMGDDKPASEYSIEGGSVLHLVLALRGGL 77          
The following BLAST results are available for this feature:
BLAST of EY685056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RUB2_ARATH1.024e-1655.56NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN... [more]
NEDD8_CAEEL1.747e-1654.93NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1[more]
RUB3_ORYSJ3.892e-1653.52NEDD8-like protein RUB3 OS=Oryza sativa subsp. jap... [more]
RUB3_ARATH1.932e-1552.11NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN... [more]
NEDD8_RAT2.523e-1550.70NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1[more]
NEDD8_RABIT2.523e-1550.70NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1[more]
NEDD8_MOUSE2.523e-1550.70NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2[more]
NEDD8_HUMAN2.523e-1550.70NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1[more]
NEDD8_BOVIN2.523e-1550.70NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1[more]
NEDD8_DICDI7.341e-1548.61NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-008-C01-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685056 ID=EY685056; Name=EY685056; organism=Citrus sinensis; type=EST; length=975bp
CCACGCGTCCGGTCAAACTCAACCATGGGCACCTTTTTGGCAAATTCGAC
CGGGAAAAACGACCCTGTCGAGCTTGACTCTACCCACACTTTGTGAAATG
ACTTGGCAGGTATACAATACGAGGAAGGCATGACACCGCGAACAGCGAAA
TACCGCTACTTTTAACATTATTTTACTAATTCCGGGACTCCGTAGGCGGA
TGACCTGCCCCTCATTGAGGACACTCTGCCCCCCCTCCTCCGTCTCCCCG
GGGGGATAGCACAATGTTCGGCAGGACTCTGACCGGGAAGACGATCACCC
TGGAGGTGGAGAGCTCCGACACGATCGACAACGTGAAGGCGAAGATCCAG
GACAAGGAAGGGATCCCCCCGGACCACCAGAGGCTCATCTTCGCCGGCAA
GCACCTGGAGGACGGGCGCGCCCTGGCCGATTATAACATCCAGAAGGAAT
CCACCCTCCACCTTGTGTTGCGCCTGAGGGGAGGAATGCCCATCTTCGAC
AAGACAGTTGACCGGGAACACCACTACCCTGCAGGCGGAGAGCCCCGACC
TCACCCACCACCACACAGCCCAGATCCGCGCAGGCAGGCAGAACCGCCCC
AATCCCCGCTCACGGATCTCCAAGGGGGCGCAGCCCCACCGCTCGCATCC
ACACTCGGGCCCCACGACCCGAACCAAGCCCCGACACTGACCCCCGCCGA
ACGCCAGGTCAGAGACATGCGCACAAGAGCCGCCGCGAGCTCAAACATCG
TCTGCCCAGCCAGCACCGCCCGATAATACGCCGCCCTCCCACTCCCCAGC
GATACCGCAACCTCCCCCGCAGCCCCGCACCTCAACCCCACCCGCAACAT
CTATTCCTCTAGTTGGAATATAAGAAGAAAGAACCCCAAATCCACGTGCC
TCAACCCCCAACACTTCAAATACTCACAAGCATCACACACCCCACCGACC
CCCCCCCCCCATCCCCCCACCCGCC
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