EY685056

Overview
NameEY685056
Unique NameEY685056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length975
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY685056_ssr580 microsatellite EY685056_ssr580:580..591. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY685056 vs. ExPASy Swiss-Prot
Match: UBL1_SCHPO (Ubiquitin-like protein 1 OS=Schizosaccharomyces pombe GN=ubl1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.643e-14
Identity = 34/71 (47.89%), Postives = 51/71 (71.83%), Query Frame = 3 
Query:  273 RTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDHQRLIFAGKHLEDGRALADYNIQKESTLHLVLRLRGG 485
            +TLTGK I L+++ +D +  +K ++++KEGIPP  QRLI+AGK + D +    Y+++  S LHLVL LRGG
Sbjct:    6 KTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGG 76
[Close]
BLAST of EY685056 vs. ExPASy Swiss-Prot
Match: RUB1_YEAST (NEDD8-like protein RUB1 OS=Saccharomyces cerevisiae GN=RUB1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.172e-12
Identity = 34/71 (47.89%), Postives = 51/71 (71.83%), Query Frame = 3 
Query:  273 RTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDHQRLIFAGKHLEDGRALADYNIQKESTLHLVLRLRGG 485
            +TLTGK I++E++ SD + ++K  +++KEGIPP  QRLIF GK ++D   + D ++ +   LHLVL LRGG
Sbjct:    6 KTLTGKEISVELKESDLVYHIKELLEEKEGIPPSQQRLIFQGKQIDDKLTVTDAHLVEGMQLHLVLTLRGG 76
The following BLAST results are available for this feature:
BLAST of EY685056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
UBL1_SCHPO3.643e-1447.89Ubiquitin-like protein 1 OS=Schizosaccharomyces po... [more]
RUB1_YEAST1.172e-1247.89NEDD8-like protein RUB1 OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-008-C01-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685056 ID=EY685056; Name=EY685056; organism=Citrus sinensis; type=EST; length=975bp
CCACGCGTCCGGTCAAACTCAACCATGGGCACCTTTTTGGCAAATTCGAC
CGGGAAAAACGACCCTGTCGAGCTTGACTCTACCCACACTTTGTGAAATG
ACTTGGCAGGTATACAATACGAGGAAGGCATGACACCGCGAACAGCGAAA
TACCGCTACTTTTAACATTATTTTACTAATTCCGGGACTCCGTAGGCGGA
TGACCTGCCCCTCATTGAGGACACTCTGCCCCCCCTCCTCCGTCTCCCCG
GGGGGATAGCACAATGTTCGGCAGGACTCTGACCGGGAAGACGATCACCC
TGGAGGTGGAGAGCTCCGACACGATCGACAACGTGAAGGCGAAGATCCAG
GACAAGGAAGGGATCCCCCCGGACCACCAGAGGCTCATCTTCGCCGGCAA
GCACCTGGAGGACGGGCGCGCCCTGGCCGATTATAACATCCAGAAGGAAT
CCACCCTCCACCTTGTGTTGCGCCTGAGGGGAGGAATGCCCATCTTCGAC
AAGACAGTTGACCGGGAACACCACTACCCTGCAGGCGGAGAGCCCCGACC
TCACCCACCACCACACAGCCCAGATCCGCGCAGGCAGGCAGAACCGCCCC
AATCCCCGCTCACGGATCTCCAAGGGGGCGCAGCCCCACCGCTCGCATCC
ACACTCGGGCCCCACGACCCGAACCAAGCCCCGACACTGACCCCCGCCGA
ACGCCAGGTCAGAGACATGCGCACAAGAGCCGCCGCGAGCTCAAACATCG
TCTGCCCAGCCAGCACCGCCCGATAATACGCCGCCCTCCCACTCCCCAGC
GATACCGCAACCTCCCCCGCAGCCCCGCACCTCAACCCCACCCGCAACAT
CTATTCCTCTAGTTGGAATATAAGAAGAAAGAACCCCAAATCCACGTGCC
TCAACCCCCAACACTTCAAATACTCACAAGCATCACACACCCCACCGACC
CCCCCCCCCCATCCCCCCACCCGCC
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