EY685053

Overview
NameEY685053
Unique NameEY685053
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length996
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685053 vs. ExPASy Swiss-Prot
Match: KTNA1_XENLA (Katanin p60 ATPase-containing subunit (Fragment) OS=Xenopus laevis GN=katna1 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.377e-32
Identity = 74/156 (47.44%), Postives = 104/156 (66.67%), Query Frame = 3
Query:   12 KWMGESAHLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQK------VLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFESLARKTEGFSGSDISDCVKDALFEPVRK 461
            K+ GES  LV  LF+MAR  AP+ IFIDEIDS+C +RG   E EASRR+K ELLVQM GVG   +       V+VLAATN P+ +D+A+RRR +KRIYIPLP  K R+ + +++L +      + + E +A   +G+SG+DI++  +DA    +R+
Sbjct:  278 KYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGASENEDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRINLKEL-ELADDVNIECIAENMDGYSGADITNVCRDASLMAMRR 432          
BLAST of EY685053 vs. ExPASy Swiss-Prot
Match: KTNA1_RAT (Katanin p60 ATPase-containing subunit A1 OS=Rattus norvegicus GN=Katna1 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.377e-32
Identity = 76/156 (48.72%), Postives = 105/156 (67.31%), Query Frame = 3
Query:   12 KWMGESAHLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVG---HND---QKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFESLARKTEGFSGSDISDCVKDALFEPVRK 461
            K+ GES  LV  LF+MAR  +P+ IFIDEIDS+C +RG   E EASRR+K ELLVQM GVG    ND   + V+VLAATN P+ +D+A+RRR +KRIYIPLP  K R+ + ++ L +      + +  S+A   EG+SG+DI++  +DA    +R+
Sbjct:  281 KYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRISLREL-ELADDVNLASIAENMEGYSGADITNVCRDASLMAMRR 435          
BLAST of EY685053 vs. ExPASy Swiss-Prot
Match: KTNA1_MOUSE (Katanin p60 ATPase-containing subunit A1 OS=Mus musculus GN=Katna1 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.348e-32
Identity = 76/156 (48.72%), Postives = 105/156 (67.31%), Query Frame = 3
Query:   12 KWMGESAHLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVG---HND---QKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFESLARKTEGFSGSDISDCVKDALFEPVRK 461
            K+ GES  LV  LF+MAR  +P+ IFIDEIDS+C +RG   E EASRR+K ELLVQM GVG    ND   + V+VLAATN P+ +D+A+RRR +KRIYIPLP  K R+ + ++ L +      + +  S+A   EG+SG+DI++  +DA    +R+
Sbjct:  281 KYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRMKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRISLREL-ELADDVNLASIAENMEGYSGADITNVCRDASLMAMRR 435          
BLAST of EY685053 vs. ExPASy Swiss-Prot
Match: KATL2_XENTR (Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus tropicalis GN=katnal2 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 3.067e-32
Identity = 78/162 (48.15%), Postives = 104/162 (64.20%), Query Frame = 3
Query:   12 KWMGESAHLVSSLFQMARESAPSIIFIDEIDSLCGQRGEG--NESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHS-----LTESDFESLARKTEGFSGSDISDCVKDALFEPVRKTQDAM 476
            KW G+S  LV  LF++AR  APS IF+DE++S+  QRG G   E E SRR+KTELLVQM G+  +D  V VLAA+N P+ LD A+ RR +KRI + LP  +ARQ M +  L    +S      T+ D+ +L  +T+G+SGSDI    K+A   PVRK  DA+
Sbjct:  330 KWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQRGTGPGGEHEGSRRMKTELLVQMDGLARSDDLVFVLAASNLPWELDYAMLRRLEKRILVDLPSKEARQAMIQHWLPPVSNSSGVELRTDLDYSTLGAETDGYSGSDIRLVCKEAAMRPVRKIFDAL 491          
BLAST of EY685053 vs. ExPASy Swiss-Prot
Match: FIGL1_CAEBR (Fidgetin-like protein 1 OS=Caenorhabditis briggsae GN=figl-1 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 6.832e-32
Identity = 74/154 (48.05%), Postives = 101/154 (65.58%), Query Frame = 3
Query:   12 KWMGESAHLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHN-DQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFESLARKTEGFSGSDISDCVKDALFEPVRKTQD 470
            KW+GE   LV +LF +AR   PS+IFIDEIDSL   R E +E E+SRRIKTE LVQ+ GV    D+++LVL ATN P  LD+A RRRF KR+YI LP+  +R  + +  L  T H +T+ + E + R T+G+SG+D+     +A   P+R+  D
Sbjct:  388 KWVGEGEKLVRALFSVARLKLPSVIFIDEIDSLLSARSE-SEHESSRRIKTEFLVQLDGVNTAPDERLLVLGATNRPQELDEAARRRFQKRLYIALPEPDSRTQIVENLLRGTRHEITDHNLEKIRRLTDGYSGADMRQLCTEAAMGPIREIGD 540          
BLAST of EY685053 vs. ExPASy Swiss-Prot
Match: FIGL1_XENLA (Fidgetin-like protein 1 OS=Xenopus laevis GN=fignl1 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.522e-31
Identity = 71/153 (46.41%), Postives = 102/153 (66.67%), Query Frame = 3
Query:   12 KWMGESAHLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVG-HNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFESLARKTEGFSGSDISDCVKDALFEPVRKTQ 467
            KW+GE   +V +LF +AR   P++IFIDEIDSL  QRGEG E E+SRRIKTE LVQ+ G    ++ ++LV+ ATN P  +D+A RRR  KR+YIPLP+  AR+ +    +     SLTE + E++  + +GFSG+D++   ++A   P+R  Q
Sbjct:  454 KWVGEGEKMVRALFTVARCHQPAVIFIDEIDSLLSQRGEG-EHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVVSLMSKEHCSLTEQEVEAIVLQADGFSGADMTQLCREAALGPIRSIQ 605          
BLAST of EY685053 vs. ExPASy Swiss-Prot
Match: SPAST_DICDI (Spastin OS=Dictyostelium discoideum GN=DDB_G0287165 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.988e-31
Identity = 76/151 (50.33%), Postives = 100/151 (66.23%), Query Frame = 3
Query:   12 KWMGESAHLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHN-DQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFESLARKTEGFSGSDISDCVKDALFEPVRK 461
            K++G+   LV +LF +A    PSIIFIDEIDSL  +R   NESEASRR+KTE+LVQ  G   N D++VLV+ ATN P  LD A  RR  KRIY+ LP+L+ R  + +  L    HSLT+    SLA  T+G+SG D++   KDA +EP+R+
Sbjct:  456 KYVGDGEKLVRALFAVATHFQPSIIFIDEIDSLLTERSS-NESEASRRLKTEILVQFDGARTNGDERVLVMGATNRPEDLDDAALRRLVKRIYVGLPELETRLQIIQHLLVGQRHSLTKQQINSLAEVTQGYSGFDLAALCKDAAYEPIRR 605          
BLAST of EY685053 vs. ExPASy Swiss-Prot
Match: SPAST_DANRE (Spastin OS=Danio rerio GN=spast PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.988e-31
Identity = 74/151 (49.01%), Postives = 101/151 (66.89%), Query Frame = 3
Query:   12 KWMGESAHLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGV-GHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFESLARKTEGFSGSDISDCVKDALFEPVRK 461
            K++GE   LV +LF +ARE  PSIIFIDEIDSL  +R EG E +ASRR+KTE L++  GV    D++VLV+ ATN P  LD+A+ RRF KRIY+ LP  + R  + K  L    + L++ +   LAR T+G+SGSD++   KDA   P+R+
Sbjct:  367 KYVGEGEKLVRALFAVARELQPSIIFIDEIDSLLCERREG-EHDASRRLKTEFLIEFDGVQSGGDERVLVMGATNRPQELDEAVLRRFAKRIYVALPTEETRLKLLKNLLSKHRNPLSQKELSQLARLTDGYSGSDLTSLAKDAALGPIRE 516          
BLAST of EY685053 vs. ExPASy Swiss-Prot
Match: FIGL1_XENTR (Fidgetin-like protein 1 OS=Xenopus tropicalis GN=fignl1 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.988e-31
Identity = 71/153 (46.41%), Postives = 101/153 (66.01%), Query Frame = 3
Query:   12 KWMGESAHLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVG-HNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFESLARKTEGFSGSDISDCVKDALFEPVRKTQ 467
            KW+GE   +V +LF +AR   P++IFIDEIDSL  QRGEG E E+SRRIKTE LVQ+ G    +D ++LV+ ATN P  +D+A RRR  KR+YIPLP+  AR+ +    +     SL E + E++  + +GFSG+D++   ++A   P+R  Q
Sbjct:  455 KWVGEGEKMVRALFTVARCHQPAVIFIDEIDSLLSQRGEG-EHESSRRIKTEFLVQLDGATTSSDDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVVSLMAKEHCSLAEQEVEAIVLQADGFSGADMTQLCREAALGPIRSIQ 606          
BLAST of EY685053 vs. ExPASy Swiss-Prot
Match: SPAST_XENLA (Spastin OS=Xenopus laevis GN=spast PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.596e-31
Identity = 74/151 (49.01%), Postives = 100/151 (66.23%), Query Frame = 3
Query:   12 KWMGESAHLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGV-GHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFESLARKTEGFSGSDISDCVKDALFEPVRK 461
            K++GE   LV +LF +ARE  PSIIFIDE+DSL  +R EG E +ASRR+KTE L++  GV    D +VLV+ ATN P  LD A+ RRF KR+Y+ LP+ + R  + K  L    + L+E +   L+R TEG+SGSDI+   KDA   P+R+
Sbjct:  398 KYVGEGEKLVRALFSVARELQPSIIFIDEVDSLLCERREG-EHDASRRLKTEFLIEFDGVQSGGDDRVLVMGATNRPQELDDAVLRRFTKRVYVALPNEETRLVLLKNLLSKQGNPLSEKELTQLSRLTEGYSGSDITALAKDAALGPIRE 547          
The following BLAST results are available for this feature:
BLAST of EY685053 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 359
Match NameE-valueIdentityDescription
KTNA1_XENLA1.377e-3247.44Katanin p60 ATPase-containing subunit (Fragment) O... [more]
KTNA1_RAT1.377e-3248.72Katanin p60 ATPase-containing subunit A1 OS=Rattus... [more]
KTNA1_MOUSE2.348e-3248.72Katanin p60 ATPase-containing subunit A1 OS=Mus mu... [more]
KATL2_XENTR3.067e-3248.15Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
FIGL1_CAEBR6.832e-3248.05Fidgetin-like protein 1 OS=Caenorhabditis briggsae... [more]
FIGL1_XENLA1.522e-3146.41Fidgetin-like protein 1 OS=Xenopus laevis GN=fignl... [more]
SPAST_DICDI1.988e-3150.33Spastin OS=Dictyostelium discoideum GN=DDB_G028716... [more]
SPAST_DANRE1.988e-3149.01Spastin OS=Danio rerio GN=spast PE=2 SV=2[more]
FIGL1_XENTR1.988e-3146.41Fidgetin-like protein 1 OS=Xenopus tropicalis GN=f... [more]
SPAST_XENLA2.596e-3149.01Spastin OS=Xenopus laevis GN=spast PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-008-B06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685053 ID=EY685053; Name=EY685053; organism=Citrus sinensis; type=EST; length=996bp
CCACGCGTCCGAAGTGGATGGGTGAAAGTGCCCATCTTGTCTCAAGCCTT
TTCCAGATGGCTCGTGAAAGTGCTCCTTCCATTATTTTTATTGATGAAAT
AGATTCCTTATGTGGTCAGCGTGGAGAAGGCAATGAGAGCGAAGCTTCTC
GGCGCATCAAAACTGAACTTCTTGTACAGATGCAGGGTGTTGGACACAAC
GATCAGAAAGTTCTTGTTCTTGCTGCAACAAATACTCCCTATGCTCTAGA
TCAGGCCATCCGGCGACGTTTTGACAAGCGTATATACATCCCTCTTCCAG
ATTTGAAGGCAAGACAGCACATGTTCAAGGTGCATTTAGGAGATACACCC
CACAGTTTGACTGAAAGTGATTTTGAAAGTTTAGCTCGCAAGACCGAGGG
GTTTTCTGGTTCTGATATTTCCGATTGTGTAAAGGATGCCTTGTTCGAAC
CTGTACGGAAGACTCAAGATGCCATGCTTTTTCTTACAACCTCTACTGGT
ATGACAATGCCTTGGGGCCCTAACTACCTGACCGGTCGTGTCTACCATAC
AGGCCCCAAACACGACCCGCAAACGCCAGAAAACTCCCCCCGTCCGCGTC
CATATTCCCTGAACCCTGCGGGGGCACGCGCGAGTCATAGCTCGAATGAA
GCAGCTGTTCTACACGCAGCTGGCTCCGCTAACCCACTTCCCACCCGCTA
CCCGGAACGCACGCCTAAACACACTCGAGCCTTTTAACACTCTAACCTGT
TTAGTACGCATGGCACCTCACTACAATGCCCTTCACGCCTGTTTCCCACC
TCTAGATAACCCTACTTCCTAAAGTACAGTGCTACTCTCTTCTCTTCACT
CGCTACCCAGCACACGAAGGGAATGCACCCTCGTGCATATAAACCTGCAG
CCCCAAGAAGTACAGAAGCCATAACTGACCCTGGAACAAAAACGCGAGAA
CCTCACAACTCAAGGAACAACCTCCGACCAGCAAAACACACATCAA
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