EY685053

Overview
NameEY685053
Unique NameEY685053
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length996
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685053 vs. ExPASy Swiss-Prot
Match: PRS4_YEAST (26S protease regulatory subunit 4 homolog OS=Saccharomyces cerevisiae GN=RPT2 PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 2.984e-11
Identity = 48/147 (32.65%), Postives = 76/147 (51.70%), Query Frame = 3
Query:   12 KWMGESAHLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNE--SEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFESLARKTEGFSGSDISDCVKDA 440
            K++G+   L   +F++A E+APSI+FIDEID++  +R + N       +R   ELL Q+ G       V V+ ATN    LD A+ R  R D++I    PDL  ++ +  +H      S  + + E+L    +  SG+DI     +A
Sbjct:  255 KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGD-VKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLS-EDVNLETLVTTKDDLSGADIQAMCTEA 399          
BLAST of EY685053 vs. ExPASy Swiss-Prot
Match: PEX6_PICAN (Peroxisomal biogenesis factor 6 OS=Pichia angusta GN=PEX6 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.984e-11
Identity = 40/106 (37.74%), Postives = 63/106 (59.43%), Query Frame = 3
Query:   15 WMGESAHLVSSLFQMARESAPSIIFIDEIDSLCGQRG-EGNESEASRRIKTELLVQMQGV--GHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQ 317
            ++GES   V  +FQ AR++ P +IF DE+DS+  +RG +G+      RI ++LL ++ G+        V V+ ATN P  LD+A+ R  RFDK +Y+ + D   +Q
Sbjct:  886 YIGESEANVRRVFQKARDAKPCVIFFDELDSVAPKRGNQGDSGGVMDRIVSQLLAELDGMSGAEGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGIADTHEKQ 991          
BLAST of EY685053 vs. ExPASy Swiss-Prot
Match: PEX6_PENCH (Peroxisomal biogenesis factor 6 OS=Penicillium chrysogenum GN=pex6 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.984e-11
Identity = 40/107 (37.38%), Postives = 63/107 (58.88%), Query Frame = 3
Query:   15 WMGESAHLVSSLFQMARESAPSIIFIDEIDSLCGQRG-EGNESEASRRIKTELLVQMQGVG---HNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQ 317
            ++GES   V  +FQ AR++ P ++F DE+DS+  +RG +G+      RI ++LL ++ G+     N   V V+ ATN P  LD A+ R  RFDK +Y+ + D   +Q
Sbjct: 1103 YIGESEANVRRVFQRARDARPCVVFFDELDSVAPKRGNQGDSGGVMDRIVSQLLAELDGMNGGEENSGGVFVIGATNRPDLLDTALLRPGRFDKMLYLGVSDTHRKQ 1209          
BLAST of EY685053 vs. ExPASy Swiss-Prot
Match: YCF46_ODOSI (Uncharacterized AAA domain-containing protein ycf46 OS=Odontella sinensis GN=ycf46 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.898e-11
Identity = 42/147 (28.57%), Postives = 78/147 (53.06%), Query Frame = 3
Query:   18 MGESAHLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGD-TPHSLTESDFESLARKTEGFSGSDISDCVKDALFE 449
            +GES   +  +  +A   +P I++IDE+D          +S  S R+   L   +  +    + V V+A  N    L   I R  RFD+  ++ LP+L+ R+ +FK+H+ +  P+S    D++ LA+ +E FSG++I   + +A+++
Sbjct:  300 VGESESRLRQMIDVAETLSPCILWIDEMDKAFSNNDSRGDSGTSNRV---LATFISWLSEKTKPVFVVATANNVDLLPLEIIRKGRFDEIFFLDLPELEERKEIFKIHIQEFRPNSWKLFDYKKLAQLSESFSGAEIRQSIIEAMYQ 443          
BLAST of EY685053 vs. ExPASy Swiss-Prot
Match: SEC18_SCHPO (Vesicular-fusion protein sec18 OS=Schizosaccharomyces pombe GN=sec18 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.898e-11
Identity = 50/157 (31.85%), Postives = 81/157 (51.59%), Query Frame = 3
Query:   12 KWMGESAHLVSSLFQMAR--------ESAPSIIFIDEIDSLCGQRG-EGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGD-TPHSLTES--DFESLARKTEGFSGSDISDCVKDA 440
            K++G+S   V  LF  A         ES   II  DE+D++C +RG  G ++    ++  +LL +M GV   +  +LV+  TN    +D+A+ R  R +  + I LPD   R  + K+H      + + E+  D E LA  T+ FSG++I+  +K A
Sbjct:  344 KYVGQSEENVRKLFADAEREYRDRGEESGLHIIIFDELDAICKKRGSSGGDTGVGDQVVNQLLAKMDGVDQLN-NILVIGMTNRKDMIDEALLRPGRLEVHMEISLPDEHGRLQILKIHTSRMASNGILENDVDMEELASLTKNFSGAEIAGLIKSA 499          
BLAST of EY685053 vs. ExPASy Swiss-Prot
Match: PEX1_SCHPO (Peroxisomal ATPase pex1 OS=Schizosaccharomyces pombe GN=pex1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.898e-11
Identity = 47/152 (30.92%), Postives = 82/152 (53.95%), Query Frame = 3
Query:   12 KWMGESAHLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFESLARKTEGFSGSDISDCVKDALFEPVRK 461
            K++G+S   V  LF  A+ + P ++F DE DS+  +RG+ + +  + R+  ++L QM G    D  V ++AAT  P  +D A+ R  R DK I+  LP+ + R  + +  L +  H    +  + L+  T+G++ +D+S  + DA    V K
Sbjct:  679 KYIGKSEQGVRDLFSRAQMAKPCVLFFDEFDSVAPRRGQ-DSTGVTDRVVNQILTQMDGAESLD-GVYIVAATTRPDMIDPALLRPGRLDKLIFCDLPNEEERLEVLQ-KLANRFHIENAAMLKKLSTLTDGYTYADLSSLLYDAHLIAVHK 827          
BLAST of EY685053 vs. ExPASy Swiss-Prot
Match: PEX6_NEUCR (Peroxisomal biogenesis factor 6 OS=Neurospora crassa GN=pex-6 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.090e-11
Identity = 55/183 (30.05%), Postives = 90/183 (49.18%), Query Frame = 3
Query:   15 WMGESAHLVSSLFQMARESAPSIIFIDEIDSLCGQRG-EGNESEASRRIKTELLVQMQGVGHND---QKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPD--------LKARQHMFKVHLGDTPHSLTESDFESLARKTEGFSGSDISDCVKDALFEPVRKTQDAMLFLTTSTGMTMPWGP 521
            ++GES   V  +FQ AR++ P ++F DE+DS+  +RG +G+      RI ++LL ++ G+   +     V V+ ATN P  LD A+ R  RFDK +Y+ + D        ++A    F +H   +  S+ E       R    ++G+D      DA+ + V  T+ A L  T    +    GP
Sbjct: 1064 YIGESEANVRRVFQRARDARPCVVFFDELDSVAPKRGNQGDSGGVMDRIVSQLLAELDGMSGGEGGGGGVFVIGATNRPDLLDPALLRPGRFDKMLYLGVSDTHDKQVTIMEALTRKFTLHPTVSLRSVAE-------RLPFTYTGADFYALCSDAMLKAV--TRQATLVDTKIRELNAAAGP 1237          
BLAST of EY685053 vs. ExPASy Swiss-Prot
Match: PEX1_YEAST (Peroxisomal ATPase PEX1 OS=Saccharomyces cerevisiae GN=PEX1 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 5.090e-11
Identity = 49/160 (30.63%), Postives = 80/160 (50.00%), Query Frame = 3
Query:   12 KWMGESAHLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQHMFKV-------HLGDTPHSLTE-SDFESLARKTEGFSGSDISDCVKDALFEPVRK 461
            K++G S   +  LF+ A+   P I+F DE DS+  +RG  + +  + R+  +LL QM G    D  V +LAAT+ P  +D A+ R  R DK +   +P    R  + +          G    +L + +D + +A KT GFSG+D+     +A  + V +
Sbjct:  770 KFIGASEQNIRELFERAQSVKPCILFFDEFDSIAPKRGH-DSTGVTDRVVNQLLTQMDGAEGLD-GVYILAATSRPDLIDSALLRPGRLDKSVICNIPTESERLDILQAIVNSKDKDTGQKKFALEKNADLKLIAEKTAGFSGADLQGLCYNAYLKSVHR 927          
BLAST of EY685053 vs. ExPASy Swiss-Prot
Match: PEX1_PICPA (Peroxisome biosynthesis protein PAS1 OS=Pichia pastoris GN=PEX1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.648e-11
Identity = 47/152 (30.92%), Postives = 78/152 (51.32%), Query Frame = 3
Query:   12 KWMGESAHLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFESLARKTEGFSGSDISDCVKDALFEPVRK 461
            K++G S   V  LF+ A+ + P I+F DE DS+  +RG  + +  + R+  ++L QM G    D  V VLAAT+ P  +D A+ R  R DK +   +PD   R  + +  +    +     +  S+A +  GFSG+D+     +A  + V +
Sbjct:  872 KYIGPSEQSVRELFERAQAAKPCILFFDEFDSIAPKRGH-DSTGVTDRVVNQMLTQMDGAEGLD-GVYVLAATSRPDLIDSALLRPGRLDKSVICDMPDFDDRLDILQ-SVTRNMNVSKSVNLSSVAGECSGFSGADLQALAYNAYLKAVHE 1020          
The following BLAST results are available for this feature:
BLAST of EY685053 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 359
Match NameE-valueIdentityDescription
PRS4_YEAST2.984e-1132.6526S protease regulatory subunit 4 homolog OS=Sacch... [more]
PEX6_PICAN2.984e-1137.74Peroxisomal biogenesis factor 6 OS=Pichia angusta ... [more]
PEX6_PENCH2.984e-1137.38Peroxisomal biogenesis factor 6 OS=Penicillium chr... [more]
YCF46_ODOSI3.898e-1128.57Uncharacterized AAA domain-containing protein ycf4... [more]
SEC18_SCHPO3.898e-1131.85Vesicular-fusion protein sec18 OS=Schizosaccharomy... [more]
PEX1_SCHPO3.898e-1130.92Peroxisomal ATPase pex1 OS=Schizosaccharomyces pom... [more]
PEX6_NEUCR5.090e-1130.05Peroxisomal biogenesis factor 6 OS=Neurospora cras... [more]
PEX1_YEAST5.090e-1130.63Peroxisomal ATPase PEX1 OS=Saccharomyces cerevisia... [more]
PEX1_PICPA6.648e-1130.92Peroxisome biosynthesis protein PAS1 OS=Pichia pas... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-008-B06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685053 ID=EY685053; Name=EY685053; organism=Citrus sinensis; type=EST; length=996bp
CCACGCGTCCGAAGTGGATGGGTGAAAGTGCCCATCTTGTCTCAAGCCTT
TTCCAGATGGCTCGTGAAAGTGCTCCTTCCATTATTTTTATTGATGAAAT
AGATTCCTTATGTGGTCAGCGTGGAGAAGGCAATGAGAGCGAAGCTTCTC
GGCGCATCAAAACTGAACTTCTTGTACAGATGCAGGGTGTTGGACACAAC
GATCAGAAAGTTCTTGTTCTTGCTGCAACAAATACTCCCTATGCTCTAGA
TCAGGCCATCCGGCGACGTTTTGACAAGCGTATATACATCCCTCTTCCAG
ATTTGAAGGCAAGACAGCACATGTTCAAGGTGCATTTAGGAGATACACCC
CACAGTTTGACTGAAAGTGATTTTGAAAGTTTAGCTCGCAAGACCGAGGG
GTTTTCTGGTTCTGATATTTCCGATTGTGTAAAGGATGCCTTGTTCGAAC
CTGTACGGAAGACTCAAGATGCCATGCTTTTTCTTACAACCTCTACTGGT
ATGACAATGCCTTGGGGCCCTAACTACCTGACCGGTCGTGTCTACCATAC
AGGCCCCAAACACGACCCGCAAACGCCAGAAAACTCCCCCCGTCCGCGTC
CATATTCCCTGAACCCTGCGGGGGCACGCGCGAGTCATAGCTCGAATGAA
GCAGCTGTTCTACACGCAGCTGGCTCCGCTAACCCACTTCCCACCCGCTA
CCCGGAACGCACGCCTAAACACACTCGAGCCTTTTAACACTCTAACCTGT
TTAGTACGCATGGCACCTCACTACAATGCCCTTCACGCCTGTTTCCCACC
TCTAGATAACCCTACTTCCTAAAGTACAGTGCTACTCTCTTCTCTTCACT
CGCTACCCAGCACACGAAGGGAATGCACCCTCGTGCATATAAACCTGCAG
CCCCAAGAAGTACAGAAGCCATAACTGACCCTGGAACAAAAACGCGAGAA
CCTCACAACTCAAGGAACAACCTCCGACCAGCAAAACACACATCAA
back to top