EY685053

Overview
NameEY685053
Unique NameEY685053
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length996
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685053 vs. ExPASy Swiss-Prot
Match: YKX4_SCHPO (Uncharacterized AAA domain-containing protein C328.04 OS=Schizosaccharomyces pombe GN=SPAC328.04 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 3.391e-31
Identity = 76/166 (45.78%), Postives = 104/166 (62.65%), Query Frame = 3
Query:   12 KWMGESAHLVSSLFQMARESAPSIIFIDEIDSLCGQRG-EGNESEASRRIKTELLVQMQGVGH--------NDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFESLARKTEGFSGSDISDCVKDALFEPVRKTQDAMLF 482
            K++GES  LV +LF +A++ +PSIIF+DEIDSL   R  +GNE E SRRIKTE L+Q   +          +  +VLVLAATN P+ +D A RRRF +R YIPLPD   R+      L    HSL+  D E++ + TE +SGSD++   KDA   P+R   +++LF
Sbjct:  531 KFLGESEKLVRALFTLAKKLSPSIIFVDEIDSLLSARSSDGNEHETSRRIKTEFLIQWSSLARAAASRQTADHPRVLVLAATNLPWCIDDAARRRFVRRTYIPLPDETTRRLHLNNLLKYQKHSLSLEDIEAIVKATEYYSGSDLTALAKDAAMGPLRSLGESLLF 696          
BLAST of EY685053 vs. ExPASy Swiss-Prot
Match: SPAST_XENTR (Spastin OS=Xenopus tropicalis GN=spast PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 3.391e-31
Identity = 74/151 (49.01%), Postives = 99/151 (65.56%), Query Frame = 3
Query:   12 KWMGESAHLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGV-GHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFESLARKTEGFSGSDISDCVKDALFEPVRK 461
            K++GE   LV +LF +ARE  PSIIFIDE+DSL  +R EG E +ASRR+KTE L++  GV    D +VLV+ ATN P  LD A+ RRF KR+Y+ LP+ + R  + K  L    + L E +   L+R TEG+SGSDI+   KDA   P+R+
Sbjct:  401 KYVGEGEKLVRALFSVARELQPSIIFIDEVDSLLCERREG-EHDASRRLKTEFLIEFDGVQSGGDDRVLVMGATNRPQELDDAVLRRFTKRVYVSLPNEETRLLLLKNLLSKQGNPLNEKELTQLSRLTEGYSGSDITALAKDAALGPIRE 550          
BLAST of EY685053 vs. ExPASy Swiss-Prot
Match: SPAST_CHICK (Spastin OS=Gallus gallus GN=SPAST PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 5.784e-31
Identity = 72/151 (47.68%), Postives = 100/151 (66.23%), Query Frame = 3
Query:   12 KWMGESAHLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGV-GHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFESLARKTEGFSGSDISDCVKDALFEPVRK 461
            K++GE   LV +LF +ARE  PSIIFIDE+DSL  +R EG E +ASRR+KTE L++  GV    + ++LV+ ATN P  LD A+ RRF KR+Y+ LP+ + R  + K  L      LT+ +   LAR T+G+SGSD++  VKDA   P+R+
Sbjct:  411 KYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREG-EHDASRRLKTEFLIEFDGVQSSGEDRILVMGATNRPQELDDAVLRRFTKRVYVSLPNEETRLILLKNLLSKQGSPLTQKELAQLARMTDGYSGSDLTALVKDAALGPIRE 560          
BLAST of EY685053 vs. ExPASy Swiss-Prot
Match: FIGL1_CAEEL (Fidgetin-like protein 1 OS=Caenorhabditis elegans GN=figl-1 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 5.784e-31
Identity = 73/154 (47.40%), Postives = 99/154 (64.29%), Query Frame = 3
Query:   12 KWMGESAHLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHN-DQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFESLARKTEGFSGSDISDCVKDALFEPVRKTQD 470
            KW+GE   LV +LF +AR   PS+IFIDEIDSL   R E +E E+SRRIKTE LVQ+ GV    D+++LVL ATN P  LD+A RRRF KR+YI LP+ ++R  + +  L  T H +T  + E +   T+G+SG+D+     +A   P+R   D
Sbjct:  388 KWVGEGEKLVRALFSVARLKLPSVIFIDEIDSLLSSRSE-SEHESSRRIKTEFLVQLDGVNTAPDERLLVLGATNRPQELDEAARRRFQKRLYIALPEPESRTQIVQNLLVGTRHDITNHNLERIRELTDGYSGADMRQLCTEAAMGPIRDIGD 540          
BLAST of EY685053 vs. ExPASy Swiss-Prot
Match: SPAST_RAT (Spastin OS=Rattus norvegicus GN=Spast PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.288e-30
Identity = 73/151 (48.34%), Postives = 100/151 (66.23%), Query Frame = 3
Query:   12 KWMGESAHLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGV-GHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFESLARKTEGFSGSDISDCVKDALFEPVRK 461
            K++GE   LV +LF +ARE  PSIIFIDE+DSL  +R EG E +ASRR+KTE L++  GV    D +VLV+ ATN P  LD+A+ RRF KR+Y+ LP+ + R  + K  L      LT+ +   LAR T+G+SGSD++   KDA   P+R+
Sbjct:  379 KYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREG-EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRE 528          
BLAST of EY685053 vs. ExPASy Swiss-Prot
Match: SPAST_PIG (Spastin (Fragment) OS=Sus scrofa GN=SPAST PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 1.288e-30
Identity = 73/151 (48.34%), Postives = 100/151 (66.23%), Query Frame = 3
Query:   12 KWMGESAHLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGV-GHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFESLARKTEGFSGSDISDCVKDALFEPVRK 461
            K++GE   LV +LF +ARE  PSIIFIDE+DSL  +R EG E +ASRR+KTE L++  GV    D +VLV+ ATN P  LD+A+ RRF KR+Y+ LP+ + R  + K  L      LT+ +   LAR T+G+SGSD++   KDA   P+R+
Sbjct:  411 KYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLRERREG-EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARLTDGYSGSDLTALAKDAALGPIRE 560          
BLAST of EY685053 vs. ExPASy Swiss-Prot
Match: SPAST_MOUSE (Spastin OS=Mus musculus GN=Spast PE=2 SV=3)

HSP 1 Score: 134.035 bits (336), Expect = 1.288e-30
Identity = 73/151 (48.34%), Postives = 100/151 (66.23%), Query Frame = 3
Query:   12 KWMGESAHLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGV-GHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFESLARKTEGFSGSDISDCVKDALFEPVRK 461
            K++GE   LV +LF +ARE  PSIIFIDE+DSL  +R EG E +ASRR+KTE L++  GV    D +VLV+ ATN P  LD+A+ RRF KR+Y+ LP+ + R  + K  L      LT+ +   LAR T+G+SGSD++   KDA   P+R+
Sbjct:  412 KYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREG-EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRE 561          
BLAST of EY685053 vs. ExPASy Swiss-Prot
Match: SPAST_HUMAN (Spastin OS=Homo sapiens GN=SPAST PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.288e-30
Identity = 73/151 (48.34%), Postives = 100/151 (66.23%), Query Frame = 3
Query:   12 KWMGESAHLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGV-GHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFESLARKTEGFSGSDISDCVKDALFEPVRK 461
            K++GE   LV +LF +ARE  PSIIFIDE+DSL  +R EG E +ASRR+KTE L++  GV    D +VLV+ ATN P  LD+A+ RRF KR+Y+ LP+ + R  + K  L      LT+ +   LAR T+G+SGSD++   KDA   P+R+
Sbjct:  414 KYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREG-EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRE 563          
BLAST of EY685053 vs. ExPASy Swiss-Prot
Match: SPAST_BOVIN (Spastin OS=Bos taurus GN=SPAST PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.288e-30
Identity = 73/151 (48.34%), Postives = 99/151 (65.56%), Query Frame = 3
Query:   12 KWMGESAHLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGV-GHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFESLARKTEGFSGSDISDCVKDALFEPVRK 461
            K++GE   LV +LF +ARE  PSIIFIDE+DSL  +R EG E +ASRR+KTE L++  GV    D +VLV+ ATN P  LD+A+ RRF KR+Y+ LP+ + R  + K  L      LT+ +   LAR T G+SGSD++   KDA   P+R+
Sbjct:  412 KYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREG-EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFTKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTNGYSGSDLTALAKDAALGPIRE 561          
BLAST of EY685053 vs. ExPASy Swiss-Prot
Match: SPAST_ANOGA (Spastin OS=Anopheles gambiae GN=spas PE=3 SV=5)

HSP 1 Score: 134.035 bits (336), Expect = 1.288e-30
Identity = 70/152 (46.05%), Postives = 102/152 (67.11%), Query Frame = 3
Query:   12 KWMGESAHLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQ--KVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFESLARKTEGFSGSDISDCVKDALFEPVRK 461
            K++G+   LV +LF +ARE  PSIIFIDE+DS+  +R   NE EA+RR+KTE LVQ  G+  N +  +++V+AATN P  LD+A  RRF KR+Y+ LPD   R+ + +  L      L+++D   LA+ TEG+SGSD++   +DA  EP+R+
Sbjct:  575 KYVGDGEKLVRALFAVARELQPSIIFIDEVDSVLSERSS-NEHEATRRLKTEFLVQFDGLPANSEADRIVVMAATNRPQELDEAALRRFPKRVYVTLPDRDTRELLLRRLLQKQGSPLSDADLAHLAQLTEGYSGSDLTALARDAALEPIRE 725          
The following BLAST results are available for this feature:
BLAST of EY685053 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 359
Match NameE-valueIdentityDescription
YKX4_SCHPO3.391e-3145.78Uncharacterized AAA domain-containing protein C328... [more]
SPAST_XENTR3.391e-3149.01Spastin OS=Xenopus tropicalis GN=spast PE=2 SV=1[more]
SPAST_CHICK5.784e-3147.68Spastin OS=Gallus gallus GN=SPAST PE=2 SV=1[more]
FIGL1_CAEEL5.784e-3147.40Fidgetin-like protein 1 OS=Caenorhabditis elegans ... [more]
SPAST_RAT1.288e-3048.34Spastin OS=Rattus norvegicus GN=Spast PE=2 SV=1[more]
SPAST_PIG1.288e-3048.34Spastin (Fragment) OS=Sus scrofa GN=SPAST PE=2 SV=... [more]
SPAST_MOUSE1.288e-3048.34Spastin OS=Mus musculus GN=Spast PE=2 SV=3[more]
SPAST_HUMAN1.288e-3048.34Spastin OS=Homo sapiens GN=SPAST PE=1 SV=1[more]
SPAST_BOVIN1.288e-3048.34Spastin OS=Bos taurus GN=SPAST PE=2 SV=1[more]
SPAST_ANOGA1.288e-3046.05Spastin OS=Anopheles gambiae GN=spas PE=3 SV=5[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-008-B06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685053 ID=EY685053; Name=EY685053; organism=Citrus sinensis; type=EST; length=996bp
CCACGCGTCCGAAGTGGATGGGTGAAAGTGCCCATCTTGTCTCAAGCCTT
TTCCAGATGGCTCGTGAAAGTGCTCCTTCCATTATTTTTATTGATGAAAT
AGATTCCTTATGTGGTCAGCGTGGAGAAGGCAATGAGAGCGAAGCTTCTC
GGCGCATCAAAACTGAACTTCTTGTACAGATGCAGGGTGTTGGACACAAC
GATCAGAAAGTTCTTGTTCTTGCTGCAACAAATACTCCCTATGCTCTAGA
TCAGGCCATCCGGCGACGTTTTGACAAGCGTATATACATCCCTCTTCCAG
ATTTGAAGGCAAGACAGCACATGTTCAAGGTGCATTTAGGAGATACACCC
CACAGTTTGACTGAAAGTGATTTTGAAAGTTTAGCTCGCAAGACCGAGGG
GTTTTCTGGTTCTGATATTTCCGATTGTGTAAAGGATGCCTTGTTCGAAC
CTGTACGGAAGACTCAAGATGCCATGCTTTTTCTTACAACCTCTACTGGT
ATGACAATGCCTTGGGGCCCTAACTACCTGACCGGTCGTGTCTACCATAC
AGGCCCCAAACACGACCCGCAAACGCCAGAAAACTCCCCCCGTCCGCGTC
CATATTCCCTGAACCCTGCGGGGGCACGCGCGAGTCATAGCTCGAATGAA
GCAGCTGTTCTACACGCAGCTGGCTCCGCTAACCCACTTCCCACCCGCTA
CCCGGAACGCACGCCTAAACACACTCGAGCCTTTTAACACTCTAACCTGT
TTAGTACGCATGGCACCTCACTACAATGCCCTTCACGCCTGTTTCCCACC
TCTAGATAACCCTACTTCCTAAAGTACAGTGCTACTCTCTTCTCTTCACT
CGCTACCCAGCACACGAAGGGAATGCACCCTCGTGCATATAAACCTGCAG
CCCCAAGAAGTACAGAAGCCATAACTGACCCTGGAACAAAAACGCGAGAA
CCTCACAACTCAAGGAACAACCTCCGACCAGCAAAACACACATCAA
back to top