EY685038

Overview
NameEY685038
Unique NameEY685038
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length544
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6157 contig Csv1_Contig6157:465..990. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY685038 vs. ExPASy Swiss-Prot
Match: RL15A_YEAST (60S ribosomal protein L15-A OS=Saccharomyces cerevisiae GN=RPL15A PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 9.521e-18
Identity = 41/66 (62.12%), Postives = 47/66 (71.21%), Query Frame = 1
Query:    7 VRLVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNNT 204
            V LVDP H AIR D R NW+C+PVHKHRE RGLT+ GKK RG+  KGH  +  +  RR TWKR NT
Sbjct:  132 VILVDPQHKAIRRDARYNWICDPVHKHREARGLTATGKKSRGI-NKGHKFNNTKAGRRKTWKRQNT 196          
BLAST of EY685038 vs. ExPASy Swiss-Prot
Match: RL15B_SCHPO (60S ribosomal protein L15-B OS=Schizosaccharomyces pombe GN=rpl15b PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.770e-17
Identity = 43/66 (65.15%), Postives = 51/66 (77.27%), Query Frame = 1
Query:    7 VRLVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNNT 204
            V LVDP+H AIR DPRINW+ NPVHKHRE RGLTS GKK RG+ GKGH ++ +   + ATW R+NT
Sbjct:  132 VILVDPSHKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGI-GKGHRYNNS--PQHATWLRHNT 194          
BLAST of EY685038 vs. ExPASy Swiss-Prot
Match: RL15A_SCHPO (60S ribosomal protein L15-A OS=Schizosaccharomyces pombe GN=rpl15a PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.171e-17
Identity = 43/66 (65.15%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    7 VRLVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNNT 204
            V LVDP+H AIR DPRINW+ NPVHKHRE RGLTS GKK RG+ GKGH  + +   + ATW R+NT
Sbjct:  132 VILVDPSHKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGI-GKGHRFNNS--PQHATWLRHNT 194          
BLAST of EY685038 vs. ExPASy Swiss-Prot
Match: RL15_RAT (60S ribosomal protein L15 OS=Rattus norvegicus GN=Rpl15 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 8.060e-17
Identity = 42/67 (62.69%), Postives = 48/67 (71.64%), Query Frame = 1
Query:    7 VRLVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNNT 204
            V L+DP H AIR +P   W+  PVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W+R NT
Sbjct:  132 VILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWRRRNT 197          
BLAST of EY685038 vs. ExPASy Swiss-Prot
Match: RL15_PONAB (60S ribosomal protein L15 OS=Pongo abelii GN=RPL15 PE=2 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 8.060e-17
Identity = 42/67 (62.69%), Postives = 48/67 (71.64%), Query Frame = 1
Query:    7 VRLVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNNT 204
            V L+DP H AIR +P   W+  PVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W+R NT
Sbjct:  132 VILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWRRRNT 197          
BLAST of EY685038 vs. ExPASy Swiss-Prot
Match: RL15_PIG (60S ribosomal protein L15 (Fragment) OS=Sus scrofa GN=RPL15 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.060e-17
Identity = 42/67 (62.69%), Postives = 48/67 (71.64%), Query Frame = 1
Query:    7 VRLVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNNT 204
            V L+DP H AIR +P   W+  PVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W+R NT
Sbjct:   81 VILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWRRRNT 146          
BLAST of EY685038 vs. ExPASy Swiss-Prot
Match: RL15_MOUSE (60S ribosomal protein L15 OS=Mus musculus GN=Rpl15 PE=2 SV=4)

HSP 1 Score: 86.6557 bits (213), Expect = 8.060e-17
Identity = 42/67 (62.69%), Postives = 48/67 (71.64%), Query Frame = 1
Query:    7 VRLVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNNT 204
            V L+DP H AIR +P   W+  PVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W+R NT
Sbjct:  132 VILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWRRRNT 197          
BLAST of EY685038 vs. ExPASy Swiss-Prot
Match: RL15_MACFA (60S ribosomal protein L15 OS=Macaca fascicularis GN=RPL15 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.060e-17
Identity = 42/67 (62.69%), Postives = 48/67 (71.64%), Query Frame = 1
Query:    7 VRLVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNNT 204
            V L+DP H AIR +P   W+  PVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W+R NT
Sbjct:  132 VILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWRRRNT 197          
BLAST of EY685038 vs. ExPASy Swiss-Prot
Match: RL15_HUMAN (60S ribosomal protein L15 OS=Homo sapiens GN=RPL15 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 8.060e-17
Identity = 42/67 (62.69%), Postives = 48/67 (71.64%), Query Frame = 1
Query:    7 VRLVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNNT 204
            V L+DP H AIR +P   W+  PVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W+R NT
Sbjct:  132 VILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWRRRNT 197          
BLAST of EY685038 vs. ExPASy Swiss-Prot
Match: RL15_BOVIN (60S ribosomal protein L15 OS=Bos taurus GN=RPL15 PE=2 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 8.060e-17
Identity = 42/67 (62.69%), Postives = 48/67 (71.64%), Query Frame = 1
Query:    7 VRLVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNNT 204
            V L+DP H AIR +P   W+  PVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W+R NT
Sbjct:  132 VILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWRRRNT 197          
The following BLAST results are available for this feature:
BLAST of EY685038 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RL15A_YEAST9.521e-1862.1260S ribosomal protein L15-A OS=Saccharomyces cerev... [more]
RL15B_SCHPO2.770e-1765.1560S ribosomal protein L15-B OS=Schizosaccharomyces... [more]
RL15A_SCHPO6.171e-1765.1560S ribosomal protein L15-A OS=Schizosaccharomyces... [more]
RL15_RAT8.060e-1762.6960S ribosomal protein L15 OS=Rattus norvegicus GN=... [more]
RL15_PONAB8.060e-1762.6960S ribosomal protein L15 OS=Pongo abelii GN=RPL15... [more]
RL15_PIG8.060e-1762.6960S ribosomal protein L15 (Fragment) OS=Sus scrofa... [more]
RL15_MOUSE8.060e-1762.6960S ribosomal protein L15 OS=Mus musculus GN=Rpl15... [more]
RL15_MACFA8.060e-1762.6960S ribosomal protein L15 OS=Macaca fascicularis G... [more]
RL15_HUMAN8.060e-1762.6960S ribosomal protein L15 OS=Homo sapiens GN=RPL15... [more]
RL15_BOVIN8.060e-1762.6960S ribosomal protein L15 OS=Bos taurus GN=RPL15 P... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-007-H09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685038 ID=EY685038; Name=EY685038; organism=Citrus sinensis; type=EST; length=544bp
CCACGCGTCCGCTTGGTTGATCCTGCTCATAATGCCATCCGTAATGACCC
AAGAATTAATTGGTTATGCAATCCTGTCCATAAGCACAGGGAACTCCGTG
GTCTTACTTCTGCAGGTAAGAAGTACAGAGGCCTACGTGGAAAAGGACAC
TTGCACCACAAGGCTCGGCCTTCGCGCAGGGCTACCTGGAAGAGAAACAA
TACTCTTTCCCTCCGTCGCTACCGTTGATCATTGTTACGGTTTTGATGTT
TATCATCAGTTGAGGGATTTTGTCTGGAGGACATAGTAGTTGCCATTTTG
AGTCTTTTAGAGATTGAAATACTATGGAACATATCTTATTTTGAAACCGT
ACATTCTAAATTAAGACATTTGTGTTTCTTGAGTCTACCTTGAATTATAA
GAGCCTTAAATGTCTCATTCTGTTTAAGGTCTTGTTGAGTATTTGTTTCG
TCACTGCTGTGATTTATCACCTCTTGAACTAGCAGATTTTAAGTTTTGGC
TCGNCAAAAGGAAATCAAATATAAAAAAGAAAAAAAATGGACAG
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