EY685038

Overview
NameEY685038
Unique NameEY685038
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length544
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6157 contig Csv1_Contig6157:465..990. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY685038 vs. ExPASy Swiss-Prot
Match: RL15_MEGAM (60S ribosomal protein L15 OS=Megalobrama amblycephala GN=rpl15 PE=2 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 2.195e-14
Identity = 41/67 (61.19%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:    7 VRLVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNNT 204
            V L+D  H AIR +P   W+   VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA WKR NT
Sbjct:  132 VILIDTFHKAIRRNPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKRRNT 197
[Close]
BLAST of EY685038 vs. ExPASy Swiss-Prot
Match: RL15_HYPNO (60S ribosomal protein L15 OS=Hypophthalmichthys nobilis GN=rpl15 PE=2 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 2.195e-14
Identity = 41/67 (61.19%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:    7 VRLVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNNT 204
            V L+D  H AIR +P   W+   VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA WKR NT
Sbjct:  132 VILIDTFHKAIRRNPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKRRNT 197
[Close]
BLAST of EY685038 vs. ExPASy Swiss-Prot
Match: RL15_CTEID (60S ribosomal protein L15 OS=Ctenopharyngodon idella GN=rpl15 PE=2 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 2.195e-14
Identity = 41/67 (61.19%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:    7 VRLVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNNT 204
            V L+D  H AIR +P   W+   VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA WKR NT
Sbjct:  132 VILIDTFHKAIRRNPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKRRNT 197
[Close]
BLAST of EY685038 vs. ExPASy Swiss-Prot
Match: RL15_SILME (60S ribosomal protein L15 OS=Silurus meridionalis GN=rpl15 PE=2 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 2.867e-14
Identity = 40/67 (59.70%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:    7 VRLVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNNT 204
            V L+D  H AIR +P + W+   VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA W+R NT
Sbjct:  132 VILIDTFHKAIRRNPDMQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWRRRNT 197
[Close]
BLAST of EY685038 vs. ExPASy Swiss-Prot
Match: RL15_SILAS (60S ribosomal protein L15 OS=Silurus asotus GN=rpl15 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.867e-14
Identity = 40/67 (59.70%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:    7 VRLVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNNT 204
            V L+D  H AIR +P + W+   VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA W+R NT
Sbjct:  132 VILIDTFHKAIRRNPDMQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWRRRNT 197
[Close]
BLAST of EY685038 vs. ExPASy Swiss-Prot
Match: RL15_PELFU (60S ribosomal protein L15 OS=Pelteobagrus fulvidraco GN=rpl15 PE=2 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 6.386e-14
Identity = 41/67 (61.19%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:    7 VRLVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNNT 204
            V LVD  H AIR +P   W+   VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA W+R NT
Sbjct:  132 VILVDIFHKAIRRNPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWRRRNT 197
[Close]
BLAST of EY685038 vs. ExPASy Swiss-Prot
Match: RL15_PARDA (60S ribosomal protein L15 OS=Paramisgurnus dabryanus GN=rpl15 PE=2 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 6.386e-14
Identity = 41/67 (61.19%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:    7 VRLVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNNT 204
            V LVD  H AIR +P   W+   VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA W+R NT
Sbjct:  132 VILVDIFHKAIRRNPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWRRRNT 197
[Close]
BLAST of EY685038 vs. ExPASy Swiss-Prot
Match: RL15_ICTPU (60S ribosomal protein L15 OS=Ictalurus punctatus GN=rpl15 PE=2 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 6.386e-14
Identity = 40/67 (59.70%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:    7 VRLVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNNT 204
            V L+D  H AIR +P   W+   VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA W+R NT
Sbjct:  132 VILIDTFHKAIRRNPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAPWRRRNT 197
[Close]
BLAST of EY685038 vs. ExPASy Swiss-Prot
Match: RL15_MYLPI (60S ribosomal protein L15 OS=Mylopharyngodon piceus GN=rpl15 PE=2 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 8.341e-14
Identity = 40/67 (59.70%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:    7 VRLVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNNT 204
            V L+D  H AIR +P   W+   VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA WKR +T
Sbjct:  132 VILIDTFHKAIRRNPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKRRDT 197
[Close]
BLAST of EY685038 vs. ExPASy Swiss-Prot
Match: RL15_HYPMO (60S ribosomal protein L15 OS=Hypophthalmichthys molitrix GN=rpl15 PE=2 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 1.858e-13
Identity = 40/67 (59.70%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:    7 VRLVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNNT 204
            V L+D  H AIR +P   W+   V KHRE+RGLTSAGKK RGL GKGH  H     SRRA WKR NT
Sbjct:  132 VILIDTFHKAIRRNPDTQWITKAVRKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKRRNT 197
The following BLAST results are available for this feature:
BLAST of EY685038 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RL15_MEGAM2.195e-1461.1960S ribosomal protein L15 OS=Megalobrama amblyceph... [more]
RL15_HYPNO2.195e-1461.1960S ribosomal protein L15 OS=Hypophthalmichthys no... [more]
RL15_CTEID2.195e-1461.1960S ribosomal protein L15 OS=Ctenopharyngodon idel... [more]
RL15_SILME2.867e-1459.7060S ribosomal protein L15 OS=Silurus meridionalis ... [more]
RL15_SILAS2.867e-1459.7060S ribosomal protein L15 OS=Silurus asotus GN=rpl... [more]
RL15_PELFU6.386e-1461.1960S ribosomal protein L15 OS=Pelteobagrus fulvidra... [more]
RL15_PARDA6.386e-1461.1960S ribosomal protein L15 OS=Paramisgurnus dabryan... [more]
RL15_ICTPU6.386e-1459.7060S ribosomal protein L15 OS=Ictalurus punctatus G... [more]
RL15_MYLPI8.341e-1459.7060S ribosomal protein L15 OS=Mylopharyngodon piceu... [more]
RL15_HYPMO1.858e-1359.7060S ribosomal protein L15 OS=Hypophthalmichthys mo... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-007-H09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685038 ID=EY685038; Name=EY685038; organism=Citrus sinensis; type=EST; length=544bp
CCACGCGTCCGCTTGGTTGATCCTGCTCATAATGCCATCCGTAATGACCC
AAGAATTAATTGGTTATGCAATCCTGTCCATAAGCACAGGGAACTCCGTG
GTCTTACTTCTGCAGGTAAGAAGTACAGAGGCCTACGTGGAAAAGGACAC
TTGCACCACAAGGCTCGGCCTTCGCGCAGGGCTACCTGGAAGAGAAACAA
TACTCTTTCCCTCCGTCGCTACCGTTGATCATTGTTACGGTTTTGATGTT
TATCATCAGTTGAGGGATTTTGTCTGGAGGACATAGTAGTTGCCATTTTG
AGTCTTTTAGAGATTGAAATACTATGGAACATATCTTATTTTGAAACCGT
ACATTCTAAATTAAGACATTTGTGTTTCTTGAGTCTACCTTGAATTATAA
GAGCCTTAAATGTCTCATTCTGTTTAAGGTCTTGTTGAGTATTTGTTTCG
TCACTGCTGTGATTTATCACCTCTTGAACTAGCAGATTTTAAGTTTTGGC
TCGNCAAAAGGAAATCAAATATAAAAAAGAAAAAAAATGGACAG
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