EY685038

Overview
NameEY685038
Unique NameEY685038
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length544
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6157 contig Csv1_Contig6157:465..990. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY685038 vs. ExPASy Swiss-Prot
Match: RL15E_METJA (50S ribosomal protein L15e OS=Methanocaldococcus jannaschii GN=rpl15e PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.140e-13
Identity = 38/63 (60.32%), Postives = 43/63 (68.25%), Query Frame = 1
Query:    7 VRLVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR 195
            V LVDP H AI+ DP++NWLC   H+ R  RGLTSAGKK RGLR KG    K RPS RA  +R
Sbjct:  130 VILVDPYHPAIKADPQLNWLCTGKHRGRAFRGLTSAGKKGRGLRNKGIGAEKVRPSIRAHGRR 192          
BLAST of EY685038 vs. ExPASy Swiss-Prot
Match: RL15_CAEEL (60S ribosomal protein L15 OS=Caenorhabditis elegans GN=rpl-15 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.573e-12
Identity = 38/67 (56.72%), Postives = 43/67 (64.18%), Query Frame = 1
Query:    7 VRLVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA-TWKRNNT 204
            V L+DP H AIR +P   W+  PVHKHRE RGLTSAG+K RGL GKG      R   +A  WKR NT
Sbjct:  132 VVLIDPFHKAIRRNPDTQWITKPVHKHREQRGLTSAGRKSRGL-GKGWRFSATRGGSQAKNWKRKNT 197          
BLAST of EY685038 vs. ExPASy Swiss-Prot
Match: RL15E_METM5 (50S ribosomal protein L15e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.020e-11
Identity = 37/63 (58.73%), Postives = 40/63 (63.49%), Query Frame = 1
Query:    7 VRLVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR 195
            V LVDP   +I+ND   NWLC   HK R  RGLTSAGKK RGL  KG    KARPS RA  K+
Sbjct:  130 VILVDPCQPSIKNDKSYNWLCKGTHKGRVTRGLTSAGKKGRGLMYKGKGAEKARPSVRANGKK 192          
BLAST of EY685038 vs. ExPASy Swiss-Prot
Match: RL15_ORCLI (60S ribosomal protein L15 OS=Orconectes limosus GN=RPL15 PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 1.739e-11
Identity = 33/66 (50.00%), Postives = 40/66 (60.61%), Query Frame = 1
Query:    7 VRLVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNNT 204
            V LVD  HN IR    +NW+C    KHRE+RG TSAG+K+RGL    H       SRR+ W R+NT
Sbjct:  132 VILVDIRHNVIRKSGSLNWICKHTQKHREMRGKTSAGRKHRGLGRGFHYSQTKGGSRRSCWLRHNT 197          
BLAST of EY685038 vs. ExPASy Swiss-Prot
Match: RL15E_THEGJ (50S ribosomal protein L15e OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.967e-11
Identity = 34/59 (57.63%), Postives = 39/59 (66.10%), Query Frame = 1
Query:    7 VRLVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 183
            V +VDP H  I++DP+I W+    HK R  RGLTSAGKK RGLR KG    K RPS RA
Sbjct:  130 VIMVDPHHPVIKSDPKIAWITGKAHKGRVFRGLTSAGKKGRGLRNKGKGAEKVRPSVRA 188          
BLAST of EY685038 vs. ExPASy Swiss-Prot
Match: RL15E_THEON (50S ribosomal protein L15e OS=Thermococcus onnurineus (strain NA1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.874e-11
Identity = 33/59 (55.93%), Postives = 39/59 (66.10%), Query Frame = 1
Query:    7 VRLVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 183
            V +VDP H  I++DP+I W+    HK R  RGLTSAG+K RGLR KG    K RPS RA
Sbjct:  130 VIMVDPHHPVIKSDPKIAWIAGKAHKGRVFRGLTSAGRKSRGLRNKGKGAEKVRPSVRA 188          
The following BLAST results are available for this feature:
BLAST of EY685038 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RL15E_METJA4.140e-1360.3250S ribosomal protein L15e OS=Methanocaldococcus j... [more]
RL15_CAEEL1.573e-1256.7260S ribosomal protein L15 OS=Caenorhabditis elegan... [more]
RL15E_METM51.020e-1158.7350S ribosomal protein L15e OS=Methanococcus maripa... [more]
RL15_ORCLI1.739e-1150.0060S ribosomal protein L15 OS=Orconectes limosus GN... [more]
RL15E_THEGJ2.967e-1157.6350S ribosomal protein L15e OS=Thermococcus gammato... [more]
RL15E_THEON3.874e-1155.9350S ribosomal protein L15e OS=Thermococcus onnurin... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-007-H09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685038 ID=EY685038; Name=EY685038; organism=Citrus sinensis; type=EST; length=544bp
CCACGCGTCCGCTTGGTTGATCCTGCTCATAATGCCATCCGTAATGACCC
AAGAATTAATTGGTTATGCAATCCTGTCCATAAGCACAGGGAACTCCGTG
GTCTTACTTCTGCAGGTAAGAAGTACAGAGGCCTACGTGGAAAAGGACAC
TTGCACCACAAGGCTCGGCCTTCGCGCAGGGCTACCTGGAAGAGAAACAA
TACTCTTTCCCTCCGTCGCTACCGTTGATCATTGTTACGGTTTTGATGTT
TATCATCAGTTGAGGGATTTTGTCTGGAGGACATAGTAGTTGCCATTTTG
AGTCTTTTAGAGATTGAAATACTATGGAACATATCTTATTTTGAAACCGT
ACATTCTAAATTAAGACATTTGTGTTTCTTGAGTCTACCTTGAATTATAA
GAGCCTTAAATGTCTCATTCTGTTTAAGGTCTTGTTGAGTATTTGTTTCG
TCACTGCTGTGATTTATCACCTCTTGAACTAGCAGATTTTAAGTTTTGGC
TCGNCAAAAGGAAATCAAATATAAAAAAGAAAAAAAATGGACAG
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