EY685020

Overview
NameEY685020
Unique NameEY685020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1001
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY685020 vs. ExPASy Swiss-Prot
Match: PPIL3_EMENI (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Emericella nidulans GN=cyp10 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 2.306e-11
Identity = 58/172 (33.72%), Postives = 73/172 (42.44%), Query Frame = 1 
Query:  181 GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXE----------------SIYGEKFPDENF---KLKHTGPGLLSMAN--------------AGPDTNGSQFFITTVTTSWLDGRHVVFGKVLS------GMDVVYKVE 579
            G + + LF +AVPKTAENF ALC              Y  + FHR+IP FM+Q            +                SIY     ++      L+H   G+LSMA+               GP  NGSQFFIT      LDG   VFGKVL+      G DV+ K+E
Sbjct:   10 GDLKVELFCEAVPKTAENFIALCAAGA----------YNDTPFHRLIPGFMIQGGDISLGPAANSQGTTPMLPFDDIPKGGTSIYHPSALNQEIHLPALRHNTRGILSMASRPVKNQTAPGSQGATGPTINGSQFFITFAAAPHLDGSSTVFGKVLNLTAEDEGGDVLSKLE 171
[Close]
BLAST of EY685020 vs. ExPASy Swiss-Prot
Match: PPIL4_MOUSE (Peptidyl-prolyl cis-trans isomerase-like 4 OS=Mus musculus GN=Ppil4 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 8.764e-11
Identity = 46/141 (32.62%), Postives = 67/141 (47.52%), Query Frame = 1 
Query:  181 GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENF--------KLKHTGPGLLSMANAGPDTNGSQFFITT-VTTSWLDGRHVVFGKVLSGMDVVYKV 576
            G +V+ L+ +  P+   NF  LC          K  +Y     H +   F++Q            ESI+G+ + D+          ++KH   G +SM N G D +GSQF ITT     +LDG H VFG+V  GMD+V K+
Sbjct:   10 GDVVIDLYTEERPRACLNFLKLC----------KIKYYNYCLIHNVQRDFIIQTGDPTGTGRGG-ESIFGQLYGDQASFFEAEKVPRIKHKKKGTVSMVNNGSDQHGSQFLITTGENLDYLDGVHTVFGEVTEGMDIVKKI 139
The following BLAST results are available for this feature:
BLAST of EY685020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 222
Match NameE-valueIdentityDescription
PPIL3_EMENI2.306e-1133.72Peptidyl-prolyl cis-trans isomerase-like 3 OS=Emer... [more]
PPIL4_MOUSE8.764e-1132.62Peptidyl-prolyl cis-trans isomerase-like 4 OS=Mus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-007-F08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685020 ID=EY685020; Name=EY685020; organism=Citrus sinensis; type=EST; length=1001bp
GCGAAACGAGAAACAACGAAGTGATACATGGCTTCGACAAATTTGCTTCC
ACTCACGATGCTATGGGCTGTTGTCCTGTTGGCCACTTTCTCTTCAATTC
AGGCGAAGAAATCGGATCAGAATTTGAAAGAAATCACAAACAAAGTTTAC
TTTGACGTTGAGATTGCCGGAAAACCTGCCGGACGTATTGTAATGGGTCT
CTTTGGAAAGGCAGTCCCTAAAACTGCAGAAAATTTCCGAGCTTTGTGCA
CAGGGGAGAAAGGGATTGGCAAGAGTGGGAAGCCACTCCACTACAAGGGA
AGTACGTTTCATAGGATTATTCCCAGCTTTATGCTTCAAGGAGGTGATTT
CACTCTTGGTGATGGAAGAGGTGGAGAGTCAATTTATGGAGAGAAGTTCC
CTGACGAAAATTTCAAACTGAAGCACACCGGCCCAGGGCTTTTGTCAATG
GCAAATGCTGGGCCAGACACCAATGGTTCACAATTCTTCATTACAACTGT
GACAACTAGCTGGTTGGATGGCAGGCATGTTGTATTTGGAAAGGTGCTAT
CGGGGATGGATGTAGTTTACAAGGTTGAAGCTGAAGGGAGGCAGAATGGC
ACTCCCAAGAACAAAGTCCGTCATTGCAGAACGCCGGTGAACTTCCTCTG
TGATTTCCCCCTAATTATATATTACCCTTTTCCCCCTTTTTAATCCCTCT
CGTCTTTTCCAACTTCCGTGAAAAATACTCTTAATTTTGGCTAATTTCTC
ATGGACTAGAACATTTTTAAATGGCATAAGCTCGTTTGCCAACGTGTGCG
CCTTTGTTTTGGCGGGGAACTCTTTTCTCAGACCAGAAAGGACAACAGAG
TAGAGGGAGCCGGCCTTCAAGAAGAAGCCCACGTTTATAGACACAGGGGT
TAGAGCGCGCGCTTCCAACTTTTAGCTTGACCGCAACAAATCAAAATGAA
TCTTGATCAGGAGGCCGCCGTCATCTACGCGGACGCCGGCAGACGTGTAC
C
back to top