EY684997

Overview
NameEY684997
Unique NameEY684997
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684997 vs. ExPASy Swiss-Prot
Match: UBC21_ARATH (Probable ubiquitin carrier protein E2 21 OS=Arabidopsis thaliana GN=UBC21 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.518e-13
Identity = 33/94 (35.11%), Postives = 58/94 (61.70%), Query Frame = 3
Query:  237 DVMKLMMSDYNVETINDGLNEFN--VEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNI 512
            +V +  ++D +++ I D  N F       GP E+ YEGGV+++   +P+ YP + P + F+ KI+HPNV   +G +CLD++  +WSP + L ++
Sbjct:   14 EVQREKVADPDIQLICDDTNIFKWTALIKGPSETPYEGGVFQLAFSVPEPYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSV 107          
BLAST of EY684997 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.982e-13
Identity = 32/74 (43.24%), Postives = 49/74 (66.22%), Query Frame = 3
Query:  300 FNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFES 521
            F+V   GP++S +EGG +K+ + LP+ YP  +P + F+ KIYHPNVD+ SG +CLD++   WSP   +  +  S
Sbjct:   35 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDK-SGRICLDILKDKWSPALQIRTVLLS 107          
BLAST of EY684997 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.982e-13
Identity = 32/79 (40.51%), Postives = 48/79 (60.76%), Query Frame = 3
Query:  285 DGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFES 521
            D L  F +   GP++S YEGG + + + LPD YP   P++ F+ KIYHPNVD++ G +CL  + + WSP   +  +  S
Sbjct:   29 DNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKL-GRICLSTLKKDWSPALQIRTVLLS 106          
BLAST of EY684997 vs. ExPASy Swiss-Prot
Match: UBE2C_DROME (Ubiquitin-conjugating enzyme E2 C OS=Drosophila melanogaster GN=vih PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.588e-13
Identity = 35/104 (33.65%), Postives = 62/104 (59.62%), Query Frame = 3
Query:  219 SKRRDMDVMKLMMS-DYNVETINDGLNEFNV--EFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFES 521
            SKR   ++M LMM+ +  +    DG N F       GP+ ++Y G  +++ ++ P++YPY +P + F+   +HPNVD + G++CLD++   WS ++D+  I  S
Sbjct:   34 SKRLHKELMNLMMANERGISAFPDGENIFKWVGTIAGPRNTVYSGQTYRLSLDFPNSYPYAAPVVKFLTSCFHPNVD-LQGAICLDILKDKWSALYDVRTILLS 136          
BLAST of EY684997 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.381e-13
Identity = 31/74 (41.89%), Postives = 49/74 (66.22%), Query Frame = 3
Query:  300 FNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFES 521
            F+V   GP++S +EGG +K+ + LP+ YP  +P + F+ KIYHPNVD++ G +CLD++   WSP   +  +  S
Sbjct:   35 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL-GRICLDILKDKWSPALQIRTVLLS 107          
BLAST of EY684997 vs. ExPASy Swiss-Prot
Match: UBE2N_PONAB (Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii GN=UBE2N PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.381e-13
Identity = 31/74 (41.89%), Postives = 49/74 (66.22%), Query Frame = 3
Query:  300 FNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFES 521
            F+V   GP++S +EGG +K+ + LP+ YP  +P + F+ KIYHPNVD++ G +CLD++   WSP   +  +  S
Sbjct:   35 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL-GRICLDILKDKWSPALQIRTVLLS 107          
BLAST of EY684997 vs. ExPASy Swiss-Prot
Match: UBE2N_MOUSE (Ubiquitin-conjugating enzyme E2 N OS=Mus musculus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.381e-13
Identity = 31/74 (41.89%), Postives = 49/74 (66.22%), Query Frame = 3
Query:  300 FNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFES 521
            F+V   GP++S +EGG +K+ + LP+ YP  +P + F+ KIYHPNVD++ G +CLD++   WSP   +  +  S
Sbjct:   35 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL-GRICLDILKDKWSPALQIRTVLLS 107          
BLAST of EY684997 vs. ExPASy Swiss-Prot
Match: UBE2N_HUMAN (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.381e-13
Identity = 31/74 (41.89%), Postives = 49/74 (66.22%), Query Frame = 3
Query:  300 FNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFES 521
            F+V   GP++S +EGG +K+ + LP+ YP  +P + F+ KIYHPNVD++ G +CLD++   WSP   +  +  S
Sbjct:   35 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL-GRICLDILKDKWSPALQIRTVLLS 107          
BLAST of EY684997 vs. ExPASy Swiss-Prot
Match: UBE2N_BOVIN (Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN=UBE2N PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.381e-13
Identity = 31/74 (41.89%), Postives = 49/74 (66.22%), Query Frame = 3
Query:  300 FNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFES 521
            F+V   GP++S +EGG +K+ + LP+ YP  +P + F+ KIYHPNVD++ G +CLD++   WSP   +  +  S
Sbjct:   35 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL-GRICLDILKDKWSPALQIRTVLLS 107          
BLAST of EY684997 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.381e-13
Identity = 37/109 (33.94%), Postives = 64/109 (58.72%), Query Frame = 3
Query:  207 MSSPSKRRDMDVMKLMMSDYNVETIN----DGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFES 521
            MS+P++RR M   K +  D  V        + + ++N    GP+ + +E G +K+ +E  + YP K P++ F++K++HPNV    GS+CLD++   WSP +D+ +I  S
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNV-YADGSICLDILQNRWSPTYDVSSILTS 108          
The following BLAST results are available for this feature:
BLAST of EY684997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
UBC21_ARATH1.518e-1335.11Probable ubiquitin carrier protein E2 21 OS=Arabid... [more]
UBE2N_MACFA1.982e-1343.24Ubiquitin-conjugating enzyme E2 N OS=Macaca fascic... [more]
UBC13_SCHPO1.982e-1340.51Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccha... [more]
UBE2C_DROME2.588e-1333.65Ubiquitin-conjugating enzyme E2 C OS=Drosophila me... [more]
UBE2N_RAT3.381e-1341.89Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]
UBE2N_PONAB3.381e-1341.89Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii ... [more]
UBE2N_MOUSE3.381e-1341.89Ubiquitin-conjugating enzyme E2 N OS=Mus musculus ... [more]
UBE2N_HUMAN3.381e-1341.89Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ... [more]
UBE2N_BOVIN3.381e-1341.89Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN... [more]
UBE2B_RAT3.381e-1333.94Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-007-D05-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684997 ID=EY684997; Name=EY684997; organism=Citrus sinensis; type=EST; length=869bp
AGAAACTCTTTCCTTGACTCAACTCACGAATAGGGTTATTCATTTTCTGG
GAATCTGGATAAGCTTCTACTTGTCACCTGTTCCTTGTTTGAGCATTGGA
CAAAAGTCTGAGGTTTCTGATTCTGTGATATTTGTTTTACTGTCTCATTT
TGCTCGGAGCTTGTGTATCTCTGTTTGGCTGTGATTTAAATTGCATAAAG
ATCAAAATGTCTTCTCCAAGCAAGAGAAGGGATATGGATGTCATGAAGCT
GATGATGAGTGATTACAATGTGGAGACAATAAATGATGGACTGAATGAAT
TTAATGTGGAATTCCATGGTCCAAAAGAAAGCCTTTATGAAGGTGGGGTT
TGGAAAATTCGTGTTGAGCTTCCTGATGCTTATCCATACAAGTCTCCTTC
CATTGGGTTTGTGAACAAGATATACCACCCTAATGTAGATGAAATGTCTG
GTTCTGTATGCTTGGATGTTATTAACCAATCCTGGAGCCCGATGTTTGAT
CTATTAAACATTTTTGAATCTTTTCTTCCTCAACTCCTTCTTTATCCCAA
TCCTTCAAACCCCCTTTATGGTGATGCAGCTTCACTGATGATCAAGGACC
GAAAACCATTATGACCCAAAAGTGAAAAAAGTATTGGTCAAGATCTTCCC
AACAAAAAACTTTTGGTAATTCCCAGGCTTGTGAGGAACATGGACATAAA
GAAATCAATAGAAAAAAAAAGCAATCTACTGATATAACCTTGCTGGCATT
CAAGACCCTTATAAACTTTGCGGGTTTTGGCCCATGTAATAGAAGACATT
AATAAACGGAAACATCGGACTGAACAACGCAATAAAACAACGCCGACCTT
TTTTAGTAAGGACGAACAC
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