EY684997

Overview
NameEY684997
Unique NameEY684997
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684997 vs. ExPASy Swiss-Prot
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.381e-13
Identity = 37/109 (33.94%), Postives = 64/109 (58.72%), Query Frame = 3
Query:  207 MSSPSKRRDMDVMKLMMSDYNVETIN----DGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFES 521
            MS+P++RR M   K +  D  V        + + ++N    GP+ + +E G +K+ +E  + YP K P++ F++K++HPNV    GS+CLD++   WSP +D+ +I  S
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNV-YADGSICLDILQNRWSPTYDVSSILTS 108          
BLAST of EY684997 vs. ExPASy Swiss-Prot
Match: UBE2B_MOUSE (Ubiquitin-conjugating enzyme E2 B OS=Mus musculus GN=Ube2b PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.381e-13
Identity = 37/109 (33.94%), Postives = 64/109 (58.72%), Query Frame = 3
Query:  207 MSSPSKRRDMDVMKLMMSDYNVETIN----DGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFES 521
            MS+P++RR M   K +  D  V        + + ++N    GP+ + +E G +K+ +E  + YP K P++ F++K++HPNV    GS+CLD++   WSP +D+ +I  S
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNV-YADGSICLDILQNRWSPTYDVSSILTS 108          
BLAST of EY684997 vs. ExPASy Swiss-Prot
Match: UBE2B_HUMAN (Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens GN=UBE2B PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.381e-13
Identity = 37/109 (33.94%), Postives = 64/109 (58.72%), Query Frame = 3
Query:  207 MSSPSKRRDMDVMKLMMSDYNVETIN----DGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFES 521
            MS+P++RR M   K +  D  V        + + ++N    GP+ + +E G +K+ +E  + YP K P++ F++K++HPNV    GS+CLD++   WSP +D+ +I  S
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNV-YADGSICLDILQNRWSPTYDVSSILTS 108          
BLAST of EY684997 vs. ExPASy Swiss-Prot
Match: UBE2B_BOVIN (Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.381e-13
Identity = 37/109 (33.94%), Postives = 64/109 (58.72%), Query Frame = 3
Query:  207 MSSPSKRRDMDVMKLMMSDYNVETIN----DGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFES 521
            MS+P++RR M   K +  D  V        + + ++N    GP+ + +E G +K+ +E  + YP K P++ F++K++HPNV    GS+CLD++   WSP +D+ +I  S
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNV-YADGSICLDILQNRWSPTYDVSSILTS 108          
BLAST of EY684997 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.381e-13
Identity = 37/109 (33.94%), Postives = 62/109 (56.88%), Query Frame = 3
Query:  207 MSSPSKRRDMDVMKLMMSD----YNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFES 521
            M++PS+RR M   K +  D     +     D +  +     GP+E+ +E G +K+ +E  + YP K P++ F++K++HPNV    GS+CLD++   WSP +D+  I  S
Sbjct:    1 MTTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNV-YADGSICLDILQNRWSPTYDVAAILTS 108          
BLAST of EY684997 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.415e-13
Identity = 37/109 (33.94%), Postives = 63/109 (57.80%), Query Frame = 3
Query:  207 MSSPSKRRDMDVMKLMMSD----YNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFES 521
            MS+P++RR M   K +  D     +     + +  +N    GP+ + +E G +K+ +E  + YP K P++ FV+K++HPNV    GS+CLD++   WSP +D+ +I  S
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNV-YADGSICLDILQNRWSPTYDVSSILTS 108          
BLAST of EY684997 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.415e-13
Identity = 37/109 (33.94%), Postives = 63/109 (57.80%), Query Frame = 3
Query:  207 MSSPSKRRDMDVMKLMMSD----YNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFES 521
            MS+P++RR M   K +  D     +     + +  +N    GP+ + +E G +K+ +E  + YP K P++ FV+K++HPNV    GS+CLD++   WSP +D+ +I  S
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNV-YADGSICLDILQNRWSPTYDVSSILTS 108          
BLAST of EY684997 vs. ExPASy Swiss-Prot
Match: UB2D1_MOUSE (Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.415e-13
Identity = 32/81 (39.51%), Postives = 47/81 (58.02%), Query Frame = 3
Query:  279 INDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFES 521
            + D L  +     GP +S Y+GGV+ + V  P  YP+K P I F  KIYHPN++  +GS+CLD++   WSP   +  +  S
Sbjct:   26 VGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINS-NGSICLDILRSQWSPALTVSKVLLS 105          
BLAST of EY684997 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.415e-13
Identity = 32/81 (39.51%), Postives = 47/81 (58.02%), Query Frame = 3
Query:  279 INDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFES 521
            + D L  +     GP +S Y+GGV+ + V  P  YP+K P I F  KIYHPN++  +GS+CLD++   WSP   +  +  S
Sbjct:   26 VGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINS-NGSICLDILRSQWSPALTVSKVLLS 105          
BLAST of EY684997 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.415e-13
Identity = 32/81 (39.51%), Postives = 47/81 (58.02%), Query Frame = 3
Query:  279 INDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFES 521
            + D L  +     GP +S Y+GGV+ + V  P  YP+K P I F  KIYHPN++  +GS+CLD++   WSP   +  +  S
Sbjct:   26 VGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINS-NGSICLDILRSQWSPALTVSKVLLS 105          
The following BLAST results are available for this feature:
BLAST of EY684997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
UBE2B_RABIT3.381e-1333.94Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c... [more]
UBE2B_MOUSE3.381e-1333.94Ubiquitin-conjugating enzyme E2 B OS=Mus musculus ... [more]
UBE2B_HUMAN3.381e-1333.94Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens ... [more]
UBE2B_BOVIN3.381e-1333.94Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN... [more]
UBC1_CAEEL3.381e-1333.94Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]
UBE2A_MOUSE4.415e-1333.94Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]
UBE2A_HUMAN4.415e-1333.94Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ... [more]
UB2D1_MOUSE4.415e-1339.51Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus... [more]
UB2D1_HUMAN4.415e-1339.51Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens... [more]
UB2D1_BOVIN4.415e-1339.51Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-007-D05-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684997 ID=EY684997; Name=EY684997; organism=Citrus sinensis; type=EST; length=869bp
AGAAACTCTTTCCTTGACTCAACTCACGAATAGGGTTATTCATTTTCTGG
GAATCTGGATAAGCTTCTACTTGTCACCTGTTCCTTGTTTGAGCATTGGA
CAAAAGTCTGAGGTTTCTGATTCTGTGATATTTGTTTTACTGTCTCATTT
TGCTCGGAGCTTGTGTATCTCTGTTTGGCTGTGATTTAAATTGCATAAAG
ATCAAAATGTCTTCTCCAAGCAAGAGAAGGGATATGGATGTCATGAAGCT
GATGATGAGTGATTACAATGTGGAGACAATAAATGATGGACTGAATGAAT
TTAATGTGGAATTCCATGGTCCAAAAGAAAGCCTTTATGAAGGTGGGGTT
TGGAAAATTCGTGTTGAGCTTCCTGATGCTTATCCATACAAGTCTCCTTC
CATTGGGTTTGTGAACAAGATATACCACCCTAATGTAGATGAAATGTCTG
GTTCTGTATGCTTGGATGTTATTAACCAATCCTGGAGCCCGATGTTTGAT
CTATTAAACATTTTTGAATCTTTTCTTCCTCAACTCCTTCTTTATCCCAA
TCCTTCAAACCCCCTTTATGGTGATGCAGCTTCACTGATGATCAAGGACC
GAAAACCATTATGACCCAAAAGTGAAAAAAGTATTGGTCAAGATCTTCCC
AACAAAAAACTTTTGGTAATTCCCAGGCTTGTGAGGAACATGGACATAAA
GAAATCAATAGAAAAAAAAAGCAATCTACTGATATAACCTTGCTGGCATT
CAAGACCCTTATAAACTTTGCGGGTTTTGGCCCATGTAATAGAAGACATT
AATAAACGGAAACATCGGACTGAACAACGCAATAAAACAACGCCGACCTT
TTTTAGTAAGGACGAACAC
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