EY684997

Overview
NameEY684997
Unique NameEY684997
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684997 vs. ExPASy Swiss-Prot
Match: UBE2C_DICDI (Probable ubiquitin-conjugating enzyme E2 C OS=Dictyostelium discoideum GN=ube2c PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.767e-13
Identity = 38/106 (35.85%), Postives = 63/106 (59.43%), Query Frame = 3
Query:  213 SPSKRRDMDVMKLMMSDY-NVETINDGLNEFNV--EFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFES 521
            S SKR   ++M LMM     +    DG N FN      G K+++YE   +K+ ++ P  YPYK P++ F  + +HPNVD  +G++CLD++   WSP++++ ++  S
Sbjct:    6 SVSKRLQSELMNLMMGPSPGISAFPDGDNIFNWIGTIQGAKDTVYEQMEFKMSLKFPTDYPYKPPTVKFETQCFHPNVDN-NGNICLDILKDKWSPVYNVRSLLIS 110          
BLAST of EY684997 vs. ExPASy Swiss-Prot
Match: UBC5_YEAST (Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae GN=UBC5 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.767e-13
Identity = 31/81 (38.27%), Postives = 46/81 (56.79%), Query Frame = 3
Query:  279 INDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFES 521
            + D L  +     GP +S Y GGV+ + +  P  YP+K P + F  KIYHPN++  SG++CLD++   WSP   L  +  S
Sbjct:   27 VGDDLYHWQASIMGPSDSPYAGGVFFLSIHFPTDYPFKPPKVNFTTKIYHPNINS-SGNICLDILKDQWSPALTLSKVLLS 106          
BLAST of EY684997 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 7.531e-13
Identity = 36/109 (33.03%), Postives = 62/109 (56.88%), Query Frame = 3
Query:  207 MSSPSKRRDMDVMKLMMSD----YNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFES 521
            MS+P++RR M   K +  D     +    ++ +  +N    GP ++ +E G +K+ +E  + YP K P++ FV+K++HPNV    G +CLD++   WSP +D+  I  S
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKVFHPNV-YADGGICLDILQNRWSPTYDVSAILTS 108          
BLAST of EY684997 vs. ExPASy Swiss-Prot
Match: UBC2_CANAL (Ubiquitin-conjugating enzyme E2 2 OS=Candida albicans GN=UBC2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.531e-13
Identity = 35/109 (32.11%), Postives = 63/109 (57.80%), Query Frame = 3
Query:  207 MSSPSKRRDMDVMKLMMSD----YNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFES 521
            MS+P++RR M   K M  D     +   + D + ++N    GP ++ +E G +++ +   + YP K P + F+++++HPNV   SG +CLD++   WSP +D+ +I  S
Sbjct:    1 MSTPARRRLMRDFKRMQQDPPSGVSASPLPDNVMKWNAVIIGPSDTPFEDGTFRLLLSFDEQYPNKPPQVKFISEMFHPNV-YASGELCLDILQNRWSPTYDVSSILTS 108          
BLAST of EY684997 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 9.836e-13
Identity = 31/79 (39.24%), Postives = 47/79 (59.49%), Query Frame = 3
Query:  285 DGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFES 521
            D    F V   GP +S +EGGV+ + + L D YP  +P + F+ KIYHPN+D++ G +CLD++   WSP   +  +  S
Sbjct:   30 DNFRYFKVAISGPLDSPFEGGVFNLELFLTDDYPMSAPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLS 107          
BLAST of EY684997 vs. ExPASy Swiss-Prot
Match: UBE2C_HUMAN (Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens GN=UBE2C PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.836e-13
Identity = 37/103 (35.92%), Postives = 60/103 (58.25%), Query Frame = 3
Query:  222 KRRDMDVMKLMMS-DYNVETI--NDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFES 521
            KR   ++M LMMS D  +     +D L ++    HG   ++YE   +K+ +E P  YPY +P++ F+   YHPNVD   G++CLD++ + WS ++D+  I  S
Sbjct:   33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVD-TQGNICLDILKEKWSALYDVRTILLS 134          
BLAST of EY684997 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.836e-13
Identity = 30/81 (37.04%), Postives = 47/81 (58.02%), Query Frame = 3
Query:  279 INDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFES 521
            + D L  +     GP ES Y+GGV+ + +  P  YP+K P + F  +IYHPN++  +GS+CLD++   WSP   +  +  S
Sbjct:   26 VGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKVLLS 105          
BLAST of EY684997 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.836e-13
Identity = 30/81 (37.04%), Postives = 47/81 (58.02%), Query Frame = 3
Query:  279 INDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFES 521
            + D L  +     GP +S Y+GGV+ + +  P  YP+K P + F  KIYHPN++  +GS+CLD++   WSP   +  +  S
Sbjct:   26 VGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINS-NGSICLDILRSQWSPALTVSKVLLS 105          
BLAST of EY684997 vs. ExPASy Swiss-Prot
Match: UBC2_YEAST (Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces cerevisiae GN=RAD6 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.285e-12
Identity = 35/109 (32.11%), Postives = 63/109 (57.80%), Query Frame = 3
Query:  207 MSSPSKRRDMDVMKLMMSD----YNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFES 521
            MS+P++RR M   K M  D     +   + D +  +N    GP ++ YE G +++ +E  + YP K P + F+++++HPNV   +G +CLD++   W+P +D+ +I  S
Sbjct:    1 MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNV-YANGEICLDILQNRWTPTYDVASILTS 108          
BLAST of EY684997 vs. ExPASy Swiss-Prot
Match: UBC2_ASHGO (Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossypii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.285e-12
Identity = 35/109 (32.11%), Postives = 63/109 (57.80%), Query Frame = 3
Query:  207 MSSPSKRRDMDVMKLMMSD----YNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFES 521
            MS+P++RR M   K M  D     +   + D +  +N    GP ++ YE G +++ +E  + YP K P + F+++++HPNV   +G +CLD++   W+P +D+ +I  S
Sbjct:    1 MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNV-YANGEICLDILQNRWTPTYDVASILTS 108          
The following BLAST results are available for this feature:
BLAST of EY684997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
UBE2C_DICDI5.767e-1335.85Probable ubiquitin-conjugating enzyme E2 C OS=Dict... [more]
UBC5_YEAST5.767e-1338.27Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharo... [more]
UBCD6_DROME7.531e-1333.03Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC2_CANAL7.531e-1332.11Ubiquitin-conjugating enzyme E2 2 OS=Candida albic... [more]
UBE2N_DICDI9.836e-1339.24Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]
UBE2C_HUMAN9.836e-1335.92Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens ... [more]
UBC2_CAEEL9.836e-1337.04Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]
UB2D4_HUMAN9.836e-1337.04Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens... [more]
UBC2_YEAST1.285e-1232.11Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces... [more]
UBC2_ASHGO1.285e-1232.11Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossyp... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-007-D05-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684997 ID=EY684997; Name=EY684997; organism=Citrus sinensis; type=EST; length=869bp
AGAAACTCTTTCCTTGACTCAACTCACGAATAGGGTTATTCATTTTCTGG
GAATCTGGATAAGCTTCTACTTGTCACCTGTTCCTTGTTTGAGCATTGGA
CAAAAGTCTGAGGTTTCTGATTCTGTGATATTTGTTTTACTGTCTCATTT
TGCTCGGAGCTTGTGTATCTCTGTTTGGCTGTGATTTAAATTGCATAAAG
ATCAAAATGTCTTCTCCAAGCAAGAGAAGGGATATGGATGTCATGAAGCT
GATGATGAGTGATTACAATGTGGAGACAATAAATGATGGACTGAATGAAT
TTAATGTGGAATTCCATGGTCCAAAAGAAAGCCTTTATGAAGGTGGGGTT
TGGAAAATTCGTGTTGAGCTTCCTGATGCTTATCCATACAAGTCTCCTTC
CATTGGGTTTGTGAACAAGATATACCACCCTAATGTAGATGAAATGTCTG
GTTCTGTATGCTTGGATGTTATTAACCAATCCTGGAGCCCGATGTTTGAT
CTATTAAACATTTTTGAATCTTTTCTTCCTCAACTCCTTCTTTATCCCAA
TCCTTCAAACCCCCTTTATGGTGATGCAGCTTCACTGATGATCAAGGACC
GAAAACCATTATGACCCAAAAGTGAAAAAAGTATTGGTCAAGATCTTCCC
AACAAAAAACTTTTGGTAATTCCCAGGCTTGTGAGGAACATGGACATAAA
GAAATCAATAGAAAAAAAAAGCAATCTACTGATATAACCTTGCTGGCATT
CAAGACCCTTATAAACTTTGCGGGTTTTGGCCCATGTAATAGAAGACATT
AATAAACGGAAACATCGGACTGAACAACGCAATAAAACAACGCCGACCTT
TTTTAGTAAGGACGAACAC
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