EY684993

Overview
NameEY684993
Unique NameEY684993
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length898
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_ECOK1 (Putative multidrug resistance protein mdtD OS=Escherichia coli O1:K1 / APEC GN=mdtD PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.967e-13
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = -2 
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FTL SL CA++  +  ++  RALQG  G  M+P+   T       +Q + A + +     + P LGPA+GG + + +SWHW+F IN+  G+    A  ML+
Sbjct:   80 TAIVLFTLGSLFCALSGTLNELLLARALQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLM 185
[Close]
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_ECO8A (Putative multidrug resistance protein mdtD OS=Escherichia coli O8 (strain IAI1) GN=mdtD PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.967e-13
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = -2 
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FTL SL CA++  +  ++  RALQG  G  M+P+   T       +Q + A + +     + P LGPA+GG + + +SWHW+F IN+  G+    A  ML+
Sbjct:   80 TAIVLFTLGSLFCALSGTLNELLLARALQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLM 185
[Close]
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_ECO7I (Putative multidrug resistance protein mdtD OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=mdtD PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.967e-13
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = -2 
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FTL SL CA++  +  ++  RALQG  G  M+P+   T       +Q + A + +     + P LGPA+GG + + +SWHW+F IN+  G+    A  ML+
Sbjct:   80 TAIVLFTLGSLFCALSGTLNELLLARALQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLM 185
[Close]
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_ECO5E (Putative multidrug resistance protein mdtD OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=mdtD PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.967e-13
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = -2 
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FTL SL CA++  +  ++  RALQG  G  M+P+   T       +Q + A + +     + P LGPA+GG + + +SWHW+F IN+  G+    A  ML+
Sbjct:   80 TAIVLFTLGSLFCALSGTLNELLLARALQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLM 185
[Close]
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_ECO57 (Putative multidrug resistance protein mdtD OS=Escherichia coli O157:H7 GN=mdtD PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.967e-13
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = -2 
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FTL SL CA++  +  ++  RALQG  G  M+P+   T       +Q + A + +     + P LGPA+GG + + +SWHW+F IN+  G+    A  ML+
Sbjct:   80 TAIVLFTLGSLFCALSGTLNELLLARALQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLM 185
[Close]
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_ECO55 (Putative multidrug resistance protein mdtD OS=Escherichia coli (strain 55989 / EAEC) GN=mdtD PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.967e-13
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = -2 
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FTL SL CA++  +  ++  RALQG  G  M+P+   T       +Q + A + +     + P LGPA+GG + + +SWHW+F IN+  G+    A  ML+
Sbjct:   80 TAIVLFTLGSLFCALSGTLNELLLARALQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLM 185
[Close]
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_ECO45 (Putative multidrug resistance protein mdtD OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=mdtD PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.967e-13
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = -2 
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FTL SL CA++  +  ++  RALQG  G  M+P+   T       +Q + A + +     + P LGPA+GG + + +SWHW+F IN+  G+    A  ML+
Sbjct:   80 TAIVLFTLGSLFCALSGTLNELLLARALQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLM 185
[Close]
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_ECO27 (Putative multidrug resistance protein mdtD OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=mdtD PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.967e-13
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = -2 
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FTL SL CA++  +  ++  RALQG  G  M+P+   T       +Q + A + +     + P LGPA+GG + + +SWHW+F IN+  G+    A  ML+
Sbjct:   80 TAIVLFTLGSLFCALSGTLNELLLARALQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLM 185
[Close]
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_ECO24 (Putative multidrug resistance protein mdtD OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=mdtD PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.967e-13
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = -2 
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FTL SL CA++  +  ++  RALQG  G  M+P+   T       +Q + A + +     + P LGPA+GG + + +SWHW+F IN+  G+    A  ML+
Sbjct:   80 TAIVLFTLGSLFCALSGTLNELLLARALQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLM 185
[Close]
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_YERE8 (Putative multidrug resistance protein mdtD OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=mdtD PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.040e-12
Identity = 38/106 (35.85%), Postives = 58/106 (54.72%), Query Frame = -2 
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            SA   FTL SLLCA A  +  +I+ R +QG  G  M+P+   T       +Q + A + +     + P +GPA+GG++ + +SWHW+F INL  G+    A   L+
Sbjct:   76 SAIILFTLGSLLCAQAETLNELISSRVIQGIGGAMMVPVGRLTVMKIVPREQYMSAMAFVTLPGQIGPLVGPALGGFLVEYASWHWIFLINLPVGVVGALATLWLM 181
The following BLAST results are available for this feature:
BLAST of EY684993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
MDTD_ECOK17.967e-1334.91Putative multidrug resistance protein mdtD OS=Esch... [more]
MDTD_ECO8A7.967e-1334.91Putative multidrug resistance protein mdtD OS=Esch... [more]
MDTD_ECO7I7.967e-1334.91Putative multidrug resistance protein mdtD OS=Esch... [more]
MDTD_ECO5E7.967e-1334.91Putative multidrug resistance protein mdtD OS=Esch... [more]
MDTD_ECO577.967e-1334.91Putative multidrug resistance protein mdtD OS=Esch... [more]
MDTD_ECO557.967e-1334.91Putative multidrug resistance protein mdtD OS=Esch... [more]
MDTD_ECO457.967e-1334.91Putative multidrug resistance protein mdtD OS=Esch... [more]
MDTD_ECO277.967e-1334.91Putative multidrug resistance protein mdtD OS=Esch... [more]
MDTD_ECO247.967e-1334.91Putative multidrug resistance protein mdtD OS=Esch... [more]
MDTD_YERE81.040e-1235.85Putative multidrug resistance protein mdtD OS=Yers... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-007-D01-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684993 ID=EY684993; Name=EY684993; organism=Citrus sinensis; type=EST; length=898bp
CTTGACCAGCATCGGCACCGCAAAGGTCACGAACAGGCCGGGCACCAGGT
TGATGTAGAACAGCCAGTGCCAGGAAGAAATATCGGTGATCCAGCCGCCC
ACGGCCGGGCCCAATGTGGGCGCAAGGGATGCAATGGCGCCGATGGTGGA
GGCCGCGATCACCCGTTGCTTGCCGTTGAAGTACATGAACGCGGTGGTGA
ACACCAACGGGATCATCCAGCCCCCCAGAAACCCCTGCAACGCGCGAAAC
GCGATCATGCTCTGGATGTTCCANGCCATCGCACACAAAAGGCTGGTCAA
GGTAAAACGCGCCGCTGCAGACCGCCAAGAGACGTCGCCGAGAGCCTAAA
CCACACATGTCTTGATGCCATCGCGCACCCCCCACCCCCCCAACACACCA
CACACCCACCTGCGGGGGGGGCCCCACACCCCCCACGGGAAAGCGACGGC
ACGCGGCCGGCCCCGGACAACCGAACAGCCGCCCGCAACCCCGCGGGCGC
GCCGCGCACGGGCTCCCCAGAGCCGGGGGCCGCCCCGAAAGCAGGAGCAG
CAAAACGCACGACGGACAAGGCCCCCCACAACAGACAAACACAACGAAAA
AGCCCCACACGACGCGAACGCCCCCCGCGACAACACCCGACCAACCGAGA
CCGCGAGAGCACAAAACAGCAAACACAAACGGAGCAGAACAGGCACCCAC
CAACAACCACCACCGAAACACGACAAAGCGCACACGCCACACCCAAACGC
CACGGCAAGTAAGCGAAGACGCACTGACGCGACGCGAGAACACCCCGCGG
AGGACGAGAGGCGGAGCCGGCACCACGAGCGACACGCAGCGCGGGGAGGC
AGGGGCCGGACGACGCAGGCCGACACGCCGGAAGCAGACAGAGAAGGC
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