EY684993

Overview
NameEY684993
Unique NameEY684993
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length898
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_ESCF3 (Putative multidrug resistance protein mdtD OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=mdtD PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.040e-12
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = -2
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FTL SL CA++  +  ++  RALQG  G  M+P+   T       +Q + A + +     + P LGPA+GG + + +SWHW+F IN+  G+    A  ML+
Sbjct:   80 TAIVLFTLGSLFCALSATLNELLLARALQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLM 185          
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: HSRA_HAEIN (Probable transport protein hsrA OS=Haemophilus influenzae GN=hsrA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.359e-12
Identity = 41/98 (41.84%), Postives = 59/98 (60.20%), Query Frame = -2
Query:   37 WRSAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASL-APTLGPAVGGWITDISSWHWLFYINLVPG 327
            +RSA   F L S+ CA A N++S+I  R +QG  G +M+P V   A +    KQ+++ A  + A A L  P LGP +GGW+   +SWHW+F IN+  G
Sbjct:   78 FRSAVFTFILGSVACAAASNLESLILARVIQGIGGAFMMP-VARLAIIQAVPKQQLVNAWNLMATAGLIGPILGPILGGWLVIHASWHWIFLINIPIG 174          
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_SHISS (Putative multidrug resistance protein mdtD OS=Shigella sonnei (strain Ss046) GN=mdtD PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.775e-12
Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = -2
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FTL SL CA++  +  ++  RALQG  G  M+P+   T       +Q + A + +     + P LGPA+GG + + +SWHW+F IN+  G+    A  +L+
Sbjct:   80 TAIVLFTLGSLFCALSGTLNELLLARALQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLLLM 185          
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_SHIBS (Putative multidrug resistance protein mdtD OS=Shigella boydii serotype 4 (strain Sb227) GN=mdtD PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.775e-12
Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = -2
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FTL SL CA++  +  ++  RALQG  G  M+P+   T       +Q + A + +     + P LGPA+GG + + +SWHW+F IN+  G+    A  +L+
Sbjct:   80 TAIVLFTLGSLFCALSGTLNELLLARALQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLLLM 185          
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_SHIB3 (Putative multidrug resistance protein mdtD OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=mdtD PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.775e-12
Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = -2
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FTL SL CA++  +  ++  RALQG  G  M+P+   T       +Q + A + +     + P LGPA+GG + + +SWHW+F IN+  G+    A  +L+
Sbjct:   80 TAIVLFTLGSLFCALSGTLNELLLARALQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLLLM 185          
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_SERP5 (Putative multidrug resistance protein mdtD OS=Serratia proteamaculans (strain 568) GN=mdtD PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.775e-12
Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = -2
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            SA   FTL S+LCA +  +  +IA R +QG  G  M+P+   T       +Q + A + +     + P +GPA+GG++   +SWHW+F IN+  G+    A  +L+
Sbjct:   81 SAIVLFTLGSILCARSETLNELIASRVVQGIGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQIGPLMGPALGGFLVQYASWHWIFLINIPVGIAGAIATLLLM 186          
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_ECOLI (Putative multidrug resistance protein mdtD OS=Escherichia coli (strain K12) GN=mdtD PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.775e-12
Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = -2
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FTL SL CA++  +  ++  RALQG  G  M+P+   T       +Q + A + +     + P LGPA+GG + + +SWHW+F IN+  G+    A  +L+
Sbjct:   80 TAIVLFTLGSLFCALSGTLNELLLARALQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLLLM 185          
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_ECOLC (Putative multidrug resistance protein mdtD OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=mdtD PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.775e-12
Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = -2
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FTL SL CA++  +  ++  RALQG  G  M+P+   T       +Q + A + +     + P LGPA+GG + + +SWHW+F IN+  G+    A  +L+
Sbjct:   80 TAIVLFTLGSLFCALSGTLNELLLARALQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLLLM 185          
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_ECOL6 (Putative multidrug resistance protein mdtD OS=Escherichia coli O6 GN=mdtD PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.775e-12
Identity = 36/106 (33.96%), Postives = 57/106 (53.77%), Query Frame = -2
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FTL SL CA++  +  ++  RALQG  G  M+P+   T       +Q + A + +     + P LGPA+GG + + +SWHW+F IN+  G+       ML+
Sbjct:   80 TAIVLFTLGSLFCALSGTLNELLLARALQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQIGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAITTLMLM 185          
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_ECOHS (Putative multidrug resistance protein mdtD OS=Escherichia coli O9:H4 (strain HS) GN=mdtD PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.775e-12
Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = -2
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FTL SL CA++  +  ++  RALQG  G  M+P+   T       +Q + A + +     + P LGPA+GG + + +SWHW+F IN+  G+    A  +L+
Sbjct:   80 TAIVLFTLGSLFCALSGTLNELLLARALQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLLLM 185          
The following BLAST results are available for this feature:
BLAST of EY684993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
MDTD_ESCF31.040e-1234.91Putative multidrug resistance protein mdtD OS=Esch... [more]
HSRA_HAEIN1.359e-1241.84Probable transport protein hsrA OS=Haemophilus inf... [more]
MDTD_SHISS1.775e-1233.96Putative multidrug resistance protein mdtD OS=Shig... [more]
MDTD_SHIBS1.775e-1233.96Putative multidrug resistance protein mdtD OS=Shig... [more]
MDTD_SHIB31.775e-1233.96Putative multidrug resistance protein mdtD OS=Shig... [more]
MDTD_SERP51.775e-1233.96Putative multidrug resistance protein mdtD OS=Serr... [more]
MDTD_ECOLI1.775e-1233.96Putative multidrug resistance protein mdtD OS=Esch... [more]
MDTD_ECOLC1.775e-1233.96Putative multidrug resistance protein mdtD OS=Esch... [more]
MDTD_ECOL61.775e-1233.96Putative multidrug resistance protein mdtD OS=Esch... [more]
MDTD_ECOHS1.775e-1233.96Putative multidrug resistance protein mdtD OS=Esch... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-007-D01-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684993 ID=EY684993; Name=EY684993; organism=Citrus sinensis; type=EST; length=898bp
CTTGACCAGCATCGGCACCGCAAAGGTCACGAACAGGCCGGGCACCAGGT
TGATGTAGAACAGCCAGTGCCAGGAAGAAATATCGGTGATCCAGCCGCCC
ACGGCCGGGCCCAATGTGGGCGCAAGGGATGCAATGGCGCCGATGGTGGA
GGCCGCGATCACCCGTTGCTTGCCGTTGAAGTACATGAACGCGGTGGTGA
ACACCAACGGGATCATCCAGCCCCCCAGAAACCCCTGCAACGCGCGAAAC
GCGATCATGCTCTGGATGTTCCANGCCATCGCACACAAAAGGCTGGTCAA
GGTAAAACGCGCCGCTGCAGACCGCCAAGAGACGTCGCCGAGAGCCTAAA
CCACACATGTCTTGATGCCATCGCGCACCCCCCACCCCCCCAACACACCA
CACACCCACCTGCGGGGGGGGCCCCACACCCCCCACGGGAAAGCGACGGC
ACGCGGCCGGCCCCGGACAACCGAACAGCCGCCCGCAACCCCGCGGGCGC
GCCGCGCACGGGCTCCCCAGAGCCGGGGGCCGCCCCGAAAGCAGGAGCAG
CAAAACGCACGACGGACAAGGCCCCCCACAACAGACAAACACAACGAAAA
AGCCCCACACGACGCGAACGCCCCCCGCGACAACACCCGACCAACCGAGA
CCGCGAGAGCACAAAACAGCAAACACAAACGGAGCAGAACAGGCACCCAC
CAACAACCACCACCGAAACACGACAAAGCGCACACGCCACACCCAAACGC
CACGGCAAGTAAGCGAAGACGCACTGACGCGACGCGAGAACACCCCGCGG
AGGACGAGAGGCGGAGCCGGCACCACGAGCGACACGCAGCGCGGGGAGGC
AGGGGCCGGACGACGCAGGCCGACACGCCGGAAGCAGACAGAGAAGGC
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