EY684993

Overview
NameEY684993
Unique NameEY684993
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length898
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_ECODH (Putative multidrug resistance protein mdtD OS=Escherichia coli (strain K12 / DH10B) GN=mdtD PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.775e-12
Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = -2 
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FTL SL CA++  +  ++  RALQG  G  M+P+   T       +Q + A + +     + P LGPA+GG + + +SWHW+F IN+  G+    A  +L+
Sbjct:   80 TAIVLFTLGSLFCALSGTLNELLLARALQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLLLM 185
[Close]
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_ECOBW (Putative multidrug resistance protein mdtD OS=Escherichia coli (strain K12 / BW2952) GN=mdtD PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.775e-12
Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = -2 
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FTL SL CA++  +  ++  RALQG  G  M+P+   T       +Q + A + +     + P LGPA+GG + + +SWHW+F IN+  G+    A  +L+
Sbjct:   80 TAIVLFTLGSLFCALSGTLNELLLARALQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLLLM 185
[Close]
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_YERPY (Putative multidrug resistance protein mdtD OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=mdtD PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.027e-12
Identity = 36/106 (33.96%), Postives = 57/106 (53.77%), Query Frame = -2 
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            SA   FT  SL+CA +  +  +I  R LQG  G  M+P+   T       +Q + A + +     + P +GPA+GG++ + +SWHW+F INL  G+    A  +L+
Sbjct:   80 SAIILFTFGSLMCAQSATLNELILSRVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMAFVTLPGQIGPLVGPALGGFLVEFASWHWIFLINLPVGVIGALATLLLM 185
[Close]
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_YERPP (Putative multidrug resistance protein mdtD OS=Yersinia pestis (strain Pestoides F) GN=mdtD PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.027e-12
Identity = 36/106 (33.96%), Postives = 57/106 (53.77%), Query Frame = -2 
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            SA   FT  SL+CA +  +  +I  R LQG  G  M+P+   T       +Q + A + +     + P +GPA+GG++ + +SWHW+F INL  G+    A  +L+
Sbjct:   80 SAIILFTFGSLMCAQSATLNELILSRVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMAFVTLPGQIGPLVGPALGGFLVEFASWHWIFLINLPVGVIGALATLLLM 185
[Close]
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_YERPN (Putative multidrug resistance protein mdtD OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=mdtD PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.027e-12
Identity = 36/106 (33.96%), Postives = 57/106 (53.77%), Query Frame = -2 
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            SA   FT  SL+CA +  +  +I  R LQG  G  M+P+   T       +Q + A + +     + P +GPA+GG++ + +SWHW+F INL  G+    A  +L+
Sbjct:   80 SAIILFTFGSLMCAQSATLNELILSRVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMAFVTLPGQIGPLVGPALGGFLVEFASWHWIFLINLPVGVIGALATLLLM 185
[Close]
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_YERPG (Putative multidrug resistance protein mdtD OS=Yersinia pestis bv. Antiqua (strain Angola) GN=mdtD PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.027e-12
Identity = 36/106 (33.96%), Postives = 57/106 (53.77%), Query Frame = -2 
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            SA   FT  SL+CA +  +  +I  R LQG  G  M+P+   T       +Q + A + +     + P +GPA+GG++ + +SWHW+F INL  G+    A  +L+
Sbjct:   80 SAIILFTFGSLMCAQSATLNELILSRVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMAFVTLPGQIGPLVGPALGGFLVEFASWHWIFLINLPVGVIGALATLLLM 185
[Close]
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_YERPE (Putative multidrug resistance protein mdtD OS=Yersinia pestis GN=mdtD PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.027e-12
Identity = 36/106 (33.96%), Postives = 57/106 (53.77%), Query Frame = -2 
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            SA   FT  SL+CA +  +  +I  R LQG  G  M+P+   T       +Q + A + +     + P +GPA+GG++ + +SWHW+F INL  G+    A  +L+
Sbjct:   80 SAIILFTFGSLMCAQSATLNELILSRVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMAFVTLPGQIGPLVGPALGGFLVEFASWHWIFLINLPVGVIGALATLLLM 185
[Close]
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_YERPB (Putative multidrug resistance protein mdtD OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=mdtD PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.027e-12
Identity = 36/106 (33.96%), Postives = 57/106 (53.77%), Query Frame = -2 
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            SA   FT  SL+CA +  +  +I  R LQG  G  M+P+   T       +Q + A + +     + P +GPA+GG++ + +SWHW+F INL  G+    A  +L+
Sbjct:   80 SAIILFTFGSLMCAQSATLNELILSRVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMAFVTLPGQIGPLVGPALGGFLVEFASWHWIFLINLPVGVIGALATLLLM 185
[Close]
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_YERPA (Putative multidrug resistance protein mdtD OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=mdtD PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.027e-12
Identity = 36/106 (33.96%), Postives = 57/106 (53.77%), Query Frame = -2 
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            SA   FT  SL+CA +  +  +I  R LQG  G  M+P+   T       +Q + A + +     + P +GPA+GG++ + +SWHW+F INL  G+    A  +L+
Sbjct:   80 SAIILFTFGSLMCAQSATLNELILSRVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMAFVTLPGQIGPLVGPALGGFLVEFASWHWIFLINLPVGVIGALATLLLM 185
[Close]
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_YERP3 (Putative multidrug resistance protein mdtD OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=mdtD PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.027e-12
Identity = 36/106 (33.96%), Postives = 57/106 (53.77%), Query Frame = -2 
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            SA   FT  SL+CA +  +  +I  R LQG  G  M+P+   T       +Q + A + +     + P +GPA+GG++ + +SWHW+F INL  G+    A  +L+
Sbjct:   80 SAIILFTFGSLMCAQSATLNELILSRVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMAFVTLPGQIGPLVGPALGGFLVEFASWHWIFLINLPVGVIGALATLLLM 185
The following BLAST results are available for this feature:
BLAST of EY684993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
MDTD_ECODH1.775e-1233.96Putative multidrug resistance protein mdtD OS=Esch... [more]
MDTD_ECOBW1.775e-1233.96Putative multidrug resistance protein mdtD OS=Esch... [more]
MDTD_YERPY3.027e-1233.96Putative multidrug resistance protein mdtD OS=Yers... [more]
MDTD_YERPP3.027e-1233.96Putative multidrug resistance protein mdtD OS=Yers... [more]
MDTD_YERPN3.027e-1233.96Putative multidrug resistance protein mdtD OS=Yers... [more]
MDTD_YERPG3.027e-1233.96Putative multidrug resistance protein mdtD OS=Yers... [more]
MDTD_YERPE3.027e-1233.96Putative multidrug resistance protein mdtD OS=Yers... [more]
MDTD_YERPB3.027e-1233.96Putative multidrug resistance protein mdtD OS=Yers... [more]
MDTD_YERPA3.027e-1233.96Putative multidrug resistance protein mdtD OS=Yers... [more]
MDTD_YERP33.027e-1233.96Putative multidrug resistance protein mdtD OS=Yers... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-007-D01-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684993 ID=EY684993; Name=EY684993; organism=Citrus sinensis; type=EST; length=898bp
CTTGACCAGCATCGGCACCGCAAAGGTCACGAACAGGCCGGGCACCAGGT
TGATGTAGAACAGCCAGTGCCAGGAAGAAATATCGGTGATCCAGCCGCCC
ACGGCCGGGCCCAATGTGGGCGCAAGGGATGCAATGGCGCCGATGGTGGA
GGCCGCGATCACCCGTTGCTTGCCGTTGAAGTACATGAACGCGGTGGTGA
ACACCAACGGGATCATCCAGCCCCCCAGAAACCCCTGCAACGCGCGAAAC
GCGATCATGCTCTGGATGTTCCANGCCATCGCACACAAAAGGCTGGTCAA
GGTAAAACGCGCCGCTGCAGACCGCCAAGAGACGTCGCCGAGAGCCTAAA
CCACACATGTCTTGATGCCATCGCGCACCCCCCACCCCCCCAACACACCA
CACACCCACCTGCGGGGGGGGCCCCACACCCCCCACGGGAAAGCGACGGC
ACGCGGCCGGCCCCGGACAACCGAACAGCCGCCCGCAACCCCGCGGGCGC
GCCGCGCACGGGCTCCCCAGAGCCGGGGGCCGCCCCGAAAGCAGGAGCAG
CAAAACGCACGACGGACAAGGCCCCCCACAACAGACAAACACAACGAAAA
AGCCCCACACGACGCGAACGCCCCCCGCGACAACACCCGACCAACCGAGA
CCGCGAGAGCACAAAACAGCAAACACAAACGGAGCAGAACAGGCACCCAC
CAACAACCACCACCGAAACACGACAAAGCGCACACGCCACACCCAAACGC
CACGGCAAGTAAGCGAAGACGCACTGACGCGACGCGAGAACACCCCGCGG
AGGACGAGAGGCGGAGCCGGCACCACGAGCGACACGCAGCGCGGGGAGGC
AGGGGCCGGACGACGCAGGCCGACACGCCGGAAGCAGACAGAGAAGGC
back to top