EY684993

Overview
NameEY684993
Unique NameEY684993
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length898
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_SALTI (Putative multidrug resistance protein mdtD OS=Salmonella typhi GN=mdtD PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.027e-12
Identity = 36/106 (33.96%), Postives = 56/106 (52.83%), Query Frame = -2
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FTL SL CA++  +  ++  R LQG  G  M+P+   T        Q + A + +     + P LGPA+GG + + +SWHW+F IN+  G+    A  ML+
Sbjct:   80 AAIVLFTLGSLFCALSGTLNQLVLARVLQGVGGAMMVPVGRLTVMKIVPRAQYMAAMTFVALPGQIGPLLGPALGGVLVEYASWHWIFLINIPVGIVGAMATFMLM 185          
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_PECCP (Putative multidrug resistance protein mdtD OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=mdtD PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.027e-12
Identity = 36/106 (33.96%), Postives = 57/106 (53.77%), Query Frame = -2
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FTL SLLCA +  +  ++A R +QG  G  M+P+   T        Q + A + +     + P +GPA+GG++ + +SWHW+F INL  G+    A   L+
Sbjct:   79 AAILLFTLGSLLCARSETLNELLASRVIQGIGGAMMVPVGRLTVMKIVPRDQYMAAMTFVTLPGQIGPLMGPALGGFLVEYASWHWIFLINLPVGIIGALATWFLM 184          
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: EMRB_MYCTU (Multidrug resistance protein B homolog OS=Mycobacterium tuberculosis GN=emrB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.954e-12
Identity = 37/91 (40.66%), Postives = 49/91 (53.85%), Query Frame = -2
Query:   34 FTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGL 306
            FTL SLLCA+A NI  +I FR +QGF GG + P+ F         K+     + +G    L P  GP +GGW+     W W+F +NL  GL
Sbjct:  118 FTLGSLLCAVAPNILLLIIFRVVQGFGGGMLTPVSFAILAREAGPKRLGRVMAVVGIPMLLGPVGGPILGGWLIGAYGWRWIFLVNLPVGL 208          
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_SALTY (Putative multidrug resistance protein mdtD OS=Salmonella typhimurium GN=mdtD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.164e-12
Identity = 36/106 (33.96%), Postives = 56/106 (52.83%), Query Frame = -2
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FTL SL CA++  +  ++  R LQG  G  M+P+   T        Q + A + +     + P LGPA+GG + + +SWHW+F IN+  G+    A  ML+
Sbjct:   80 AAIVLFTLGSLFCALSGTLNQLVLARVLQGVGGAMMVPVGRLTVMKIVPRAQYMAAMTFVTLPGQIGPLLGPALGGVLVEYASWHWIFLINIPVGIVGAMATFMLM 185          
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_SALSV (Putative multidrug resistance protein mdtD OS=Salmonella schwarzengrund (strain CVM19633) GN=mdtD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.164e-12
Identity = 36/106 (33.96%), Postives = 56/106 (52.83%), Query Frame = -2
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FTL SL CA++  +  ++  R LQG  G  M+P+   T        Q + A + +     + P LGPA+GG + + +SWHW+F IN+  G+    A  ML+
Sbjct:   80 AAIVLFTLGSLFCALSGTLNQLVLARVLQGVGGAMMVPVGRLTVMKIVPRAQYMAAMTFVTLPGQIGPLLGPALGGVLVEYASWHWIFLINIPVGIVGAIATFMLM 185          
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_SALPK (Putative multidrug resistance protein mdtD OS=Salmonella paratyphi A (strain AKU_12601) GN=mdtD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.164e-12
Identity = 36/106 (33.96%), Postives = 56/106 (52.83%), Query Frame = -2
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FTL SL CA++  +  ++  R LQG  G  M+P+   T        Q + A + +     + P LGPA+GG + + +SWHW+F IN+  G+    A  ML+
Sbjct:   80 AAIVLFTLGSLFCALSGTLNQLVLARVLQGVGGAMMVPVGRLTVMKIVPRAQYMAAMTFVTLPGQIGPLLGPALGGVLVEYASWHWIFLINIPVGIVGAMATFMLM 185          
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_SALPB (Putative multidrug resistance protein mdtD OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=mdtD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.164e-12
Identity = 36/106 (33.96%), Postives = 56/106 (52.83%), Query Frame = -2
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FTL SL CA++  +  ++  R LQG  G  M+P+   T        Q + A + +     + P LGPA+GG + + +SWHW+F IN+  G+    A  ML+
Sbjct:   80 AAIVLFTLGSLFCALSGTLNQLVLARVLQGVGGAMMVPVGRLTVMKIVPRAQYMAAMTFVTLPGQIGPLLGPALGGVLVEYASWHWIFLINIPVGIVGAMATFMLM 185          
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_SALPA (Putative multidrug resistance protein mdtD OS=Salmonella paratyphi A GN=mdtD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.164e-12
Identity = 36/106 (33.96%), Postives = 56/106 (52.83%), Query Frame = -2
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FTL SL CA++  +  ++  R LQG  G  M+P+   T        Q + A + +     + P LGPA+GG + + +SWHW+F IN+  G+    A  ML+
Sbjct:   80 AAIVLFTLGSLFCALSGTLNQLVLARVLQGVGGAMMVPVGRLTVMKIVPRAQYMAAMTFVTLPGQIGPLLGPALGGVLVEYASWHWIFLINIPVGIVGAMATFMLM 185          
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_SALNS (Putative multidrug resistance protein mdtD OS=Salmonella newport (strain SL254) GN=mdtD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.164e-12
Identity = 36/106 (33.96%), Postives = 56/106 (52.83%), Query Frame = -2
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FTL SL CA++  +  ++  R LQG  G  M+P+   T        Q + A + +     + P LGPA+GG + + +SWHW+F IN+  G+    A  ML+
Sbjct:   80 AAIVLFTLGSLFCALSGTLNQLVLARVLQGVGGAMMVPVGRLTVMKIVPRAQYMAAMTFVTLPGQIGPLLGPALGGVLVEYASWHWIFLINIPVGIVGAMATFMLM 185          
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_SALHS (Putative multidrug resistance protein mdtD OS=Salmonella heidelberg (strain SL476) GN=mdtD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.164e-12
Identity = 36/106 (33.96%), Postives = 56/106 (52.83%), Query Frame = -2
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FTL SL CA++  +  ++  R LQG  G  M+P+   T        Q + A + +     + P LGPA+GG + + +SWHW+F IN+  G+    A  ML+
Sbjct:   80 AAIVLFTLGSLFCALSGTLNQLVLARVLQGVGGAMMVPVGRLTVMKIVPRAQYMAAMTFVTLPGQIGPLLGPALGGVLVEYASWHWIFLINIPVGIVGAMATFMLM 185          
The following BLAST results are available for this feature:
BLAST of EY684993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
MDTD_SALTI3.027e-1233.96Putative multidrug resistance protein mdtD OS=Salm... [more]
MDTD_PECCP3.027e-1233.96Putative multidrug resistance protein mdtD OS=Pect... [more]
EMRB_MYCTU3.954e-1240.66Multidrug resistance protein B homolog OS=Mycobact... [more]
MDTD_SALTY5.164e-1233.96Putative multidrug resistance protein mdtD OS=Salm... [more]
MDTD_SALSV5.164e-1233.96Putative multidrug resistance protein mdtD OS=Salm... [more]
MDTD_SALPK5.164e-1233.96Putative multidrug resistance protein mdtD OS=Salm... [more]
MDTD_SALPB5.164e-1233.96Putative multidrug resistance protein mdtD OS=Salm... [more]
MDTD_SALPA5.164e-1233.96Putative multidrug resistance protein mdtD OS=Salm... [more]
MDTD_SALNS5.164e-1233.96Putative multidrug resistance protein mdtD OS=Salm... [more]
MDTD_SALHS5.164e-1233.96Putative multidrug resistance protein mdtD OS=Salm... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-007-D01-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684993 ID=EY684993; Name=EY684993; organism=Citrus sinensis; type=EST; length=898bp
CTTGACCAGCATCGGCACCGCAAAGGTCACGAACAGGCCGGGCACCAGGT
TGATGTAGAACAGCCAGTGCCAGGAAGAAATATCGGTGATCCAGCCGCCC
ACGGCCGGGCCCAATGTGGGCGCAAGGGATGCAATGGCGCCGATGGTGGA
GGCCGCGATCACCCGTTGCTTGCCGTTGAAGTACATGAACGCGGTGGTGA
ACACCAACGGGATCATCCAGCCCCCCAGAAACCCCTGCAACGCGCGAAAC
GCGATCATGCTCTGGATGTTCCANGCCATCGCACACAAAAGGCTGGTCAA
GGTAAAACGCGCCGCTGCAGACCGCCAAGAGACGTCGCCGAGAGCCTAAA
CCACACATGTCTTGATGCCATCGCGCACCCCCCACCCCCCCAACACACCA
CACACCCACCTGCGGGGGGGGCCCCACACCCCCCACGGGAAAGCGACGGC
ACGCGGCCGGCCCCGGACAACCGAACAGCCGCCCGCAACCCCGCGGGCGC
GCCGCGCACGGGCTCCCCAGAGCCGGGGGCCGCCCCGAAAGCAGGAGCAG
CAAAACGCACGACGGACAAGGCCCCCCACAACAGACAAACACAACGAAAA
AGCCCCACACGACGCGAACGCCCCCCGCGACAACACCCGACCAACCGAGA
CCGCGAGAGCACAAAACAGCAAACACAAACGGAGCAGAACAGGCACCCAC
CAACAACCACCACCGAAACACGACAAAGCGCACACGCCACACCCAAACGC
CACGGCAAGTAAGCGAAGACGCACTGACGCGACGCGAGAACACCCCGCGG
AGGACGAGAGGCGGAGCCGGCACCACGAGCGACACGCAGCGCGGGGAGGC
AGGGGCCGGACGACGCAGGCCGACACGCCGGAAGCAGACAGAGAAGGC
back to top