EY684993

Overview
NameEY684993
Unique NameEY684993
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length898
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_SALEP (Putative multidrug resistance protein mdtD OS=Salmonella enteritidis PT4 (strain P125109) GN=mdtD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.164e-12
Identity = 36/106 (33.96%), Postives = 56/106 (52.83%), Query Frame = -2
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FTL SL CA++  +  ++  R LQG  G  M+P+   T        Q + A + +     + P LGPA+GG + + +SWHW+F IN+  G+    A  ML+
Sbjct:   80 AAIVLFTLGSLFCALSGTLNQLVLARVLQGVGGAMMVPVGRLTVMKIVPRAQYMAAMTFVTLPGQIGPLLGPALGGVLVEYASWHWIFLINIPVGIVGAMATFMLM 185          
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_SALDC (Putative multidrug resistance protein mdtD OS=Salmonella dublin (strain CT_02021853) GN=mdtD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.164e-12
Identity = 36/106 (33.96%), Postives = 56/106 (52.83%), Query Frame = -2
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FTL SL CA++  +  ++  R LQG  G  M+P+   T        Q + A + +     + P LGPA+GG + + +SWHW+F IN+  G+    A  ML+
Sbjct:   80 AAIVLFTLGSLFCALSGTLNQLVLARVLQGVGGAMMVPVGRLTVMKIVPRTQYMAAMTFVTLPGQIGPLLGPALGGVLVEYASWHWIFLINIPVGIVGAMATFMLM 185          
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_SALA4 (Putative multidrug resistance protein mdtD OS=Salmonella agona (strain SL483) GN=mdtD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.164e-12
Identity = 36/106 (33.96%), Postives = 56/106 (52.83%), Query Frame = -2
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FTL SL CA++  +  ++  R LQG  G  M+P+   T        Q + A + +     + P LGPA+GG + + +SWHW+F IN+  G+    A  ML+
Sbjct:   80 AAIVLFTLGSLFCALSGTLNQLVLARVLQGVGGAMMVPVGRLTVMKIVPRAQYMAAMTFVTLPGQIGPLLGPALGGVLVEYASWHWIFLINIPVGIVGAMATFMLM 185          
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_ERWCT (Putative multidrug resistance protein mdtD OS=Erwinia carotovora subsp. atroseptica GN=mdtD PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.744e-12
Identity = 36/106 (33.96%), Postives = 56/106 (52.83%), Query Frame = -2
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FTL SLLCA +  +  ++  R +QG  G  M+P+   T        Q + A + +     + P LGPA+GG++ + +SWHW+F INL  G+    A   L+
Sbjct:   79 AAILLFTLGSLLCARSETLDELLISRVIQGIGGAMMVPVGRLTVMKIVPRDQYMAAMTFVTLPGQIGPLLGPALGGFLVEYASWHWIFLINLPVGIIGALATWFLM 184          
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_ENTS8 (Putative multidrug resistance protein mdtD OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=mdtD PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.744e-12
Identity = 35/96 (36.46%), Postives = 52/96 (54.17%), Query Frame = -2
Query:   34 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGL 321
            +A   FTL SL CA +  +  ++A R LQG  G  M+P+   T        Q + A + +     + P LGPA+GG + + +SWHW+F INL  G+
Sbjct:   80 TAIVLFTLGSLFCAQSSTLNELVAARVLQGIGGAMMVPVGRLTVMKIVPRDQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINLPVGI 175          
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_CITK8 (Putative multidrug resistance protein mdtD OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=mdtD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.808e-12
Identity = 36/106 (33.96%), Postives = 56/106 (52.83%), Query Frame = -2
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FTL SL CA +  +  ++  R LQG  G  M+P+   T       +Q + A + +     + P LGPA+GG + + +SWHW+F IN+  G+    A  ML+
Sbjct:   80 TAIVLFTLGSLFCAWSSTLNELVLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGILVEYASWHWIFLINIPVGIVGAIATLMLM 185          
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: EMRY_ECOLI (Multidrug resistance protein Y OS=Escherichia coli (strain K12) GN=emrY PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.808e-12
Identity = 35/102 (34.31%), Postives = 58/102 (56.86%), Query Frame = -2
Query:    1 FTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLVK 306
            F+L+SL+C+++ N+  +I FR +QG + G +IPL  +     +  ++R  A +       +AP  GP +GG+I D  SW W+F IN+  G+ V      L+K
Sbjct:   93 FSLSSLMCSLSTNLDVLIFFRVVQGLMAGPLIPLSQSLLLRNYPPEKRTFALALWSMTVIIAPICGPILGGYICDNFSWGWIFLINVPMGIIVLTLCLTLLK 194          
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_ENT38 (Putative multidrug resistance protein mdtD OS=Enterobacter sp. (strain 638) GN=mdtD PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.502e-11
Identity = 37/106 (34.91%), Postives = 55/106 (51.89%), Query Frame = -2
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FTL SL CA A  +  ++  R LQG  G  M+P+   T       +Q + A + +     + P LGPA+GG + + +SWHW+F INL  G+    A   L+
Sbjct:   80 TAIVLFTLGSLFCAKADTLNELVMSRVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGILVEYASWHWIFLINLPVGIVGAIATLWLM 185          
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_YERPS (Putative multidrug resistance protein mdtD OS=Yersinia pseudotuberculosis GN=mdtD PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.962e-11
Identity = 35/106 (33.02%), Postives = 56/106 (52.83%), Query Frame = -2
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            SA   FT  SL+CA +  +  +I  R LQG     M+P+   T       +Q + A + +     + P +GPA+GG++ + +SWHW+F INL  G+    A  +L+
Sbjct:   80 SAIILFTFGSLMCAQSATLNELILSRVLQGVGDAMMVPVGRLTVMKIVPREQYMAAMAFVTLPGQIGPLVGPALGGFLVEFASWHWIFLINLPVGVIGALATLLLM 185          
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_KLEP3 (Putative multidrug resistance protein mdtD OS=Klebsiella pneumoniae (strain 342) GN=mdtD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.457e-11
Identity = 35/106 (33.02%), Postives = 53/106 (50.00%), Query Frame = -2
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FT  SL CA A  +  ++  R LQG  G  M+P+   T        Q + A + +     + P LGPA+GG + + +SWHW+F IN+  G+    A   L+
Sbjct:   80 TAIVLFTAGSLFCAQASTLDQLVMARVLQGIGGAMMVPVGRLTVMKIVPRDQYMAAMTFVTLPGQVGPLLGPALGGVLVEYASWHWIFLINIPVGIVGAIATLCLM 185          
The following BLAST results are available for this feature:
BLAST of EY684993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
MDTD_SALEP5.164e-1233.96Putative multidrug resistance protein mdtD OS=Salm... [more]
MDTD_SALDC5.164e-1233.96Putative multidrug resistance protein mdtD OS=Salm... [more]
MDTD_SALA45.164e-1233.96Putative multidrug resistance protein mdtD OS=Salm... [more]
MDTD_ERWCT6.744e-1233.96Putative multidrug resistance protein mdtD OS=Erwi... [more]
MDTD_ENTS86.744e-1236.46Putative multidrug resistance protein mdtD OS=Ente... [more]
MDTD_CITK88.808e-1233.96Putative multidrug resistance protein mdtD OS=Citr... [more]
EMRY_ECOLI8.808e-1234.31Multidrug resistance protein Y OS=Escherichia coli... [more]
MDTD_ENT381.502e-1134.91Putative multidrug resistance protein mdtD OS=Ente... [more]
MDTD_YERPS1.962e-1133.02Putative multidrug resistance protein mdtD OS=Yers... [more]
MDTD_KLEP37.457e-1133.02Putative multidrug resistance protein mdtD OS=Kleb... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-007-D01-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684993 ID=EY684993; Name=EY684993; organism=Citrus sinensis; type=EST; length=898bp
CTTGACCAGCATCGGCACCGCAAAGGTCACGAACAGGCCGGGCACCAGGT
TGATGTAGAACAGCCAGTGCCAGGAAGAAATATCGGTGATCCAGCCGCCC
ACGGCCGGGCCCAATGTGGGCGCAAGGGATGCAATGGCGCCGATGGTGGA
GGCCGCGATCACCCGTTGCTTGCCGTTGAAGTACATGAACGCGGTGGTGA
ACACCAACGGGATCATCCAGCCCCCCAGAAACCCCTGCAACGCGCGAAAC
GCGATCATGCTCTGGATGTTCCANGCCATCGCACACAAAAGGCTGGTCAA
GGTAAAACGCGCCGCTGCAGACCGCCAAGAGACGTCGCCGAGAGCCTAAA
CCACACATGTCTTGATGCCATCGCGCACCCCCCACCCCCCCAACACACCA
CACACCCACCTGCGGGGGGGGCCCCACACCCCCCACGGGAAAGCGACGGC
ACGCGGCCGGCCCCGGACAACCGAACAGCCGCCCGCAACCCCGCGGGCGC
GCCGCGCACGGGCTCCCCAGAGCCGGGGGCCGCCCCGAAAGCAGGAGCAG
CAAAACGCACGACGGACAAGGCCCCCCACAACAGACAAACACAACGAAAA
AGCCCCACACGACGCGAACGCCCCCCGCGACAACACCCGACCAACCGAGA
CCGCGAGAGCACAAAACAGCAAACACAAACGGAGCAGAACAGGCACCCAC
CAACAACCACCACCGAAACACGACAAAGCGCACACGCCACACCCAAACGC
CACGGCAAGTAAGCGAAGACGCACTGACGCGACGCGAGAACACCCCGCGG
AGGACGAGAGGCGGAGCCGGCACCACGAGCGACACGCAGCGCGGGGAGGC
AGGGGCCGGACGACGCAGGCCGACACGCCGGAAGCAGACAGAGAAGGC
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