EY684993

Overview
NameEY684993
Unique NameEY684993
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length898
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: EMRB_HAEIN (Multidrug resistance protein B homolog OS=Haemophilus influenzae GN=emrB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.457e-11
Identity = 33/93 (35.48%), Postives = 56/93 (60.22%), Query Frame = -2 
Query:   28 FTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFV 306
            F ++S LC +A +++++I FR +QG + G +IPL  +     +  ++R +A +       +AP  GP +GGWI+D   W W+F+IN+  GL V
Sbjct:   93 FVVSSWLCGIADSLEALIIFRVIQGAVAGPVIPLSQSLLLNNYPPEKRGMALAFWSMTIVVAPIFGPILGGWISDNIHWGWIFFINVPIGLSV 185
[Close]
BLAST of EY684993 vs. ExPASy Swiss-Prot
Match: MDTD_KLEP7 (Putative multidrug resistance protein mdtD OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=mdtD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.739e-11
Identity = 35/106 (33.02%), Postives = 53/106 (50.00%), Query Frame = -2 
Query:    4 SAAARFTLTSLLCAMAWNIQSMIAFRALQGFLGGWMIPLVFTTAFMYFNGKQRVIAASTIGAIASLAPTLGPAVGGWITDISSWHWLFYINLVPGLFVTFAVPMLV 321
            +A   FT  SL CA A  +  ++  R LQG  G  M+P+   T        Q + A + +     + P LGPA+GG + + +SWHW+F IN+  G+    A   L+
Sbjct:   80 TAIVLFTAGSLFCAQASTLDQLVMARVLQGVGGAMMVPVGRLTVMKIVPRDQYMAAMTFVTLPGQVGPLLGPALGGVLVEYASWHWIFLINIPVGIVGAIATLCLM 185
The following BLAST results are available for this feature:
BLAST of EY684993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
EMRB_HAEIN7.457e-1135.48Multidrug resistance protein B homolog OS=Haemophi... [more]
MDTD_KLEP79.739e-1133.02Putative multidrug resistance protein mdtD OS=Kleb... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-007-D01-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684993 ID=EY684993; Name=EY684993; organism=Citrus sinensis; type=EST; length=898bp
CTTGACCAGCATCGGCACCGCAAAGGTCACGAACAGGCCGGGCACCAGGT
TGATGTAGAACAGCCAGTGCCAGGAAGAAATATCGGTGATCCAGCCGCCC
ACGGCCGGGCCCAATGTGGGCGCAAGGGATGCAATGGCGCCGATGGTGGA
GGCCGCGATCACCCGTTGCTTGCCGTTGAAGTACATGAACGCGGTGGTGA
ACACCAACGGGATCATCCAGCCCCCCAGAAACCCCTGCAACGCGCGAAAC
GCGATCATGCTCTGGATGTTCCANGCCATCGCACACAAAAGGCTGGTCAA
GGTAAAACGCGCCGCTGCAGACCGCCAAGAGACGTCGCCGAGAGCCTAAA
CCACACATGTCTTGATGCCATCGCGCACCCCCCACCCCCCCAACACACCA
CACACCCACCTGCGGGGGGGGCCCCACACCCCCCACGGGAAAGCGACGGC
ACGCGGCCGGCCCCGGACAACCGAACAGCCGCCCGCAACCCCGCGGGCGC
GCCGCGCACGGGCTCCCCAGAGCCGGGGGCCGCCCCGAAAGCAGGAGCAG
CAAAACGCACGACGGACAAGGCCCCCCACAACAGACAAACACAACGAAAA
AGCCCCACACGACGCGAACGCCCCCCGCGACAACACCCGACCAACCGAGA
CCGCGAGAGCACAAAACAGCAAACACAAACGGAGCAGAACAGGCACCCAC
CAACAACCACCACCGAAACACGACAAAGCGCACACGCCACACCCAAACGC
CACGGCAAGTAAGCGAAGACGCACTGACGCGACGCGAGAACACCCCGCGG
AGGACGAGAGGCGGAGCCGGCACCACGAGCGACACGCAGCGCGGGGAGGC
AGGGGCCGGACGACGCAGGCCGACACGCCGGAAGCAGACAGAGAAGGC
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