EY684984

Overview
NameEY684984
Unique NameEY684984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684984 vs. ExPASy Swiss-Prot
Match: FADI_VIBPA (3-ketoacyl-CoA thiolase OS=Vibrio parahaemolyticus GN=fadI PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.648e-13
Identity = 40/89 (44.94%), Postives = 57/89 (64.04%), Query Frame = -3
Query:   60 SPAYKQGLVDDSI-----SPYRG-LXRDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLR 308
            S A+K+G +   +      PY+  +  DNN+R D++LE  A L PA+DRQ G++TA NSTPLTDG + V+L  E  A E G+ +L Y+R
Sbjct:  213 SQAWKEGKIQGEVMTAFPEPYKKWISEDNNVRHDSTLEGYAKLRPAFDRQYGSVTAANSTPLTDGGAAVMLMREGKAKELGMEILGYIR 301          
BLAST of EY684984 vs. ExPASy Swiss-Prot
Match: FADI_SHEPC (3-ketoacyl-CoA thiolase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=fadI PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.648e-13
Identity = 38/80 (47.50%), Postives = 55/80 (68.75%), Query Frame = -3
Query:   36 ISPYRG-LXRDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRTGETAAVN 272
            I PY+  + RDNN+R ++ LE  A L PA+D+Q+GT+TA NSTPLTDGAS ++L SE  A   G   + Y+++   +A+N
Sbjct:  231 IPPYKQFIDRDNNIRENSVLESYAKLRPAFDKQHGTVTAANSTPLTDGASAIILMSEGRAKALGYQPIGYIKSYAFSAIN 310          
BLAST of EY684984 vs. ExPASy Swiss-Prot
Match: FADI_VIBFM (3-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain MJ11) GN=fadI PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.517e-13
Identity = 42/95 (44.21%), Postives = 58/95 (61.05%), Query Frame = -3
Query:   36 AYKQGLVDDSI-----SPYR-GLXRDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRTGETAAVN 302
            A+K GL+ D +      PY   L  DNN+R D+ L   A L PA+DR+ G++TA NSTPLTDG + +LL SE  A E G   L Y+R+   +A++
Sbjct:  222 AWKDGLIQDEVMTAFPEPYTVWLDHDNNIRHDSELASYAKLRPAFDRKYGSVTAANSTPLTDGGAALLLMSEKRAKELGYEPLGYIRSFAFSAID 316          
BLAST of EY684984 vs. ExPASy Swiss-Prot
Match: FADI_SHIDS (3-ketoacyl-CoA thiolase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=fadI PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.517e-13
Identity = 43/96 (44.79%), Postives = 61/96 (63.54%), Query Frame = -3
Query:   36 QRWSPA-YKQGLVDDSISPYRGLX-RDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRTGETAAVN 317
            Q WS    K+ ++   I PY+ L   DNN+  ++SL   A L PA+DR++GT+TA NSTPLTDGA+ V+L +E+   E GL  L YLR+    A++
Sbjct:  215 QSWSEGKLKEEVMTAFIPPYKQLLAEDNNICGNSSLADYAKLRPAFDRKHGTVTAANSTPLTDGAAAVILMTESRTKELGLVPLGYLRSYAFTAID 310          
BLAST of EY684984 vs. ExPASy Swiss-Prot
Match: FADI_SHELP (3-ketoacyl-CoA thiolase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=fadI PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.517e-13
Identity = 37/80 (46.25%), Postives = 57/80 (71.25%), Query Frame = -3
Query:   36 ISPYRG-LXRDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRTGETAAVN 272
            + PY+  + RDNN+R ++SL+  A L PA+DR++G++TA NSTPLTDGAS VLL SE+ A   G   + Y+++   +A++
Sbjct:  231 VPPYKSFIDRDNNIRENSSLDSYAKLRPAFDRKHGSVTAANSTPLTDGASAVLLMSESRAKALGYEPIGYIKSYAFSAID 310          
BLAST of EY684984 vs. ExPASy Swiss-Prot
Match: FADI_SALTY (3-ketoacyl-CoA thiolase OS=Salmonella typhimurium GN=fadI PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.517e-13
Identity = 43/102 (42.16%), Postives = 64/102 (62.75%), Query Frame = -3
Query:   36 SLQRWSPAYKQGLVDDSIS-----PYRG-LXRDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRTGETAAVN 323
            S QR + A+ +G + + +      PY+     DNN+R  ++L   A L PA+DR++G++TA NSTPLTDGA+ V+L +E+ A E GL  L YLRT    A++
Sbjct:  209 SHQRAAQAWAEGKLAEEVMTTYVPPYKNPFAEDNNIRGASTLADYAKLRPAFDRKHGSVTAANSTPLTDGAAAVILMTESRAKELGLRPLGYLRTYAFTAID 310          
BLAST of EY684984 vs. ExPASy Swiss-Prot
Match: FADI_AERS4 (3-ketoacyl-CoA thiolase OS=Aeromonas salmonicida (strain A449) GN=fadI PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.517e-13
Identity = 42/99 (42.42%), Postives = 60/99 (60.61%), Query Frame = -3
Query:   36 VSLQRWSPAYKQGLVDDS-ISPYRG-LXRDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRTGETAAVN 326
            ++ Q W+     G V  + + PY+  L RDNN+R  + L   A L P +DR +GT+TA N+TPLTDGA+ VLL  E  A E GL  L Y+R+   +A++
Sbjct:  212 LAAQAWADGKLSGEVFTAHVPPYKSPLERDNNIRESSDLASYAKLKPVFDRVHGTVTAANATPLTDGAAAVLLMREGRAKELGLEPLGYIRSFAFSAID 310          
BLAST of EY684984 vs. ExPASy Swiss-Prot
Match: FADI_SALAR (3-ketoacyl-CoA thiolase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=fadI PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.900e-13
Identity = 42/102 (41.18%), Postives = 65/102 (63.73%), Query Frame = -3
Query:   36 SLQRWSPAYKQGLVDDSIS-----PYRG-LXRDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRTGETAAVN 323
            S QR + A+ +G + + +      PY+     DNN+R +++L   A L PA+DR++G++TA NSTPLTDGA+ V+L +E+ A E GL  L YLR+    A++
Sbjct:  209 SHQRAAQAWAEGKLAEEVMTTYAPPYKNPFSEDNNIRGNSTLADYAKLRPAFDRKHGSVTAANSTPLTDGAAAVILMTESRAKELGLRPLGYLRSYAFTAID 310          
BLAST of EY684984 vs. ExPASy Swiss-Prot
Match: FADI_PHOLL (3-ketoacyl-CoA thiolase OS=Photorhabdus luminescens subsp. laumondii GN=fadI PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.900e-13
Identity = 43/95 (45.26%), Postives = 60/95 (63.16%), Query Frame = -3
Query:   36 AYKQGLVDDSIS-----PYR-GLXRDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRTGETAAVN 302
            A++QGL+ D +      PYR  L  DNN+R ++ L   A L PA+DR+ GT+TA NSTPLTDGA+ V+L  E+ A   G   L YLR+   +A++
Sbjct:  216 AWEQGLLVDEVMTAHFPPYREALLEDNNIRKNSVLTSYAKLRPAFDRKYGTVTAANSTPLTDGAAAVILMRESVAKALGTKPLGYLRSYAFSAID 310          
BLAST of EY684984 vs. ExPASy Swiss-Prot
Match: FADI_SHEWM (3-ketoacyl-CoA thiolase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=fadI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.705e-13
Identity = 37/87 (42.53%), Postives = 59/87 (67.82%), Query Frame = -3
Query:   36 QGLVDDSISPYRG-LXRDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRTGETAAVN 293
            Q ++   + PY+  + RDNN+R ++S+E  A L PA+DR++GT+TA  STPLTDGAS +LL SE+ A   G   + Y+++   +A++
Sbjct:  224 QEVMTAHVPPYKAFIDRDNNIRENSSIESYAKLRPAFDRKHGTVTAATSTPLTDGASAILLMSESRAKALGYNPIGYIKSYAFSAID 310          
The following BLAST results are available for this feature:
BLAST of EY684984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
FADI_VIBPA2.648e-1344.943-ketoacyl-CoA thiolase OS=Vibrio parahaemolyticus... [more]
FADI_SHEPC2.648e-1347.503-ketoacyl-CoA thiolase OS=Shewanella putrefaciens... [more]
FADI_VIBFM4.517e-1344.213-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain... [more]
FADI_SHIDS4.517e-1344.793-ketoacyl-CoA thiolase OS=Shigella dysenteriae se... [more]
FADI_SHELP4.517e-1346.253-ketoacyl-CoA thiolase OS=Shewanella loihica (str... [more]
FADI_SALTY4.517e-1342.163-ketoacyl-CoA thiolase OS=Salmonella typhimurium ... [more]
FADI_AERS44.517e-1342.423-ketoacyl-CoA thiolase OS=Aeromonas salmonicida (... [more]
FADI_SALAR5.900e-1341.183-ketoacyl-CoA thiolase OS=Salmonella arizonae (st... [more]
FADI_PHOLL5.900e-1345.263-ketoacyl-CoA thiolase OS=Photorhabdus luminescen... [more]
FADI_SHEWM7.705e-1342.533-ketoacyl-CoA thiolase OS=Shewanella woodyi (stra... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-007-C01-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684984 ID=EY684984; Name=EY684984; organism=Citrus sinensis; type=EST; length=883bp
CTTGCAGAACGGGTCCCGGAATTCCGGGTCGACGAATTCACCGCTGCGGT
TTCACCGGTTCGCAAATAAGCCAAAACCGGCAAGCCACGTTCGGCAGCCC
ATGCCTCGCTGGCCAGCAGCACCACCGAGGCGCCATCGGTCAGGGGCGTG
GAGTTGCCGGCGGTGAGCGTGCCGTTCTGGCGGTCGTAGGCCGGGGACAG
GCCGGCGAGTTTCTCCAGGCTGGTGTCGGCCCGCAGGTTGTTGTCCCGGG
NCAGGCCGCGATACGGGCTGATCGAATCATCGACCAAACCCTGCTTGTAA
GCCGGCGACCACCGCTGGAGACTAACTCAGGGCAAAGAAACCAAACCGCA
CCGAACTACCAACCACCACCCCCCCACACGCCCCAAACCACCCACACACA
CCCGACGGGAGACACACGGCAGAAAACCACCAACAGAGAGGAGGGGGGGG
GGGGGGAGTTCGAAGAAGACGGGTCAGTCCGCAGAACCGCGAAGCACTAA
AGCCAAACGTCTCACGCCGGCCCGCGCCTGCCACGCGACGAGGCACCACC
GACGCGGACCGCCCGCACAACCTGACTTAGAAAAACGAAATCATAAAAGA
CCAATGTATAACGGAAAAGAGGCAAGCGGCACTAGTCCGGCCCCCAGCCC
AGACCGTAAGACACCGTACCACCAAAGCCCCTCGAGCCCCCACCCCTCGG
AGGGGGCGGAAAGACAGACCCGCACCCCACCCCCCGCCCCCTCCGAGAAC
GACAGCCTGTCGGCAAGCCCGGCACCCGCCACCTCCGAACGAGGCCGCGC
TCACAAGGAACCGACAACCACAGGACCGCGCACCCGCCCCGGCGCCCACT
TCCCGAACACCGCCCCCACACGCGACAGGAAAA
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