EY684984

Overview
NameEY684984
Unique NameEY684984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684984 vs. ExPASy Swiss-Prot
Match: FADI_SHEHH (3-ketoacyl-CoA thiolase OS=Shewanella halifaxensis (strain HAW-EB4) GN=fadI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.705e-13
Identity = 37/80 (46.25%), Postives = 55/80 (68.75%), Query Frame = -3
Query:   36 ISPYRG-LXRDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRTGETAAVN 272
            + PY+  + RDNN+R +++LE  A L PA+DR++G++TA NSTPLTDGAS VLL SE  A   G   + Y+++    A++
Sbjct:  231 VPPYKSFIDRDNNIRENSTLESYAKLRPAFDRKHGSVTAANSTPLTDGASAVLLMSEGRAKALGYTPIGYIKSYAFTAID 310          
BLAST of EY684984 vs. ExPASy Swiss-Prot
Match: FADI_PSEHT (3-ketoacyl-CoA thiolase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=fadI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.705e-13
Identity = 38/98 (38.78%), Postives = 63/98 (64.29%), Query Frame = -3
Query:   39 VSLQRWSPA-YKQGLVDDSISPYRG-LXRDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRTGETAAV 326
            ++ Q W+    K  ++   + PY+  +  DNN+R ++++E  A L P +DRQ+GT+TA N+TPLTDGA+ VL+ SE+ A   G  +L Y+R+   +A+
Sbjct:  212 LATQAWADGKLKDEVMTAHLPPYKSFIEEDNNIRKNSTVEGYAKLKPVFDRQHGTVTAANATPLTDGAAAVLMMSESKAKALGYEILGYVRSFAFSAI 309          
BLAST of EY684984 vs. ExPASy Swiss-Prot
Match: FADI_VIBF1 (3-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=fadI PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.006e-12
Identity = 41/95 (43.16%), Postives = 57/95 (60.00%), Query Frame = -3
Query:   36 AYKQGLVDDSI-----SPYRG-LXRDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRTGETAAVN 302
            A+K GL+ D +      PY   L  DNN+R D+ L   A L PA+D + G++TA NSTPLTDG + +LL SE  A E G   L Y+R+   +A++
Sbjct:  222 AWKDGLIQDEVMTAFPEPYTAWLDHDNNIRHDSDLASYAKLRPAFDHKYGSVTAANSTPLTDGGAALLLMSEKRAKELGYEPLGYIRSFAFSAID 316          
BLAST of EY684984 vs. ExPASy Swiss-Prot
Match: FADI_SHESW (3-ketoacyl-CoA thiolase OS=Shewanella sp. (strain W3-18-1) GN=fadI PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.006e-12
Identity = 37/80 (46.25%), Postives = 55/80 (68.75%), Query Frame = -3
Query:   36 ISPYRG-LXRDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRTGETAAVN 272
            I PY+  + RDNN+R ++ LE  A L PA+D+Q+GT+TA NSTPLTDGAS ++L SE  A   G   + Y+++   +A++
Sbjct:  231 IPPYKQFIDRDNNIRENSVLESYAKLRPAFDKQHGTVTAANSTPLTDGASAIILMSEGRAKALGYQPIGYIKSYAFSAID 310          
BLAST of EY684984 vs. ExPASy Swiss-Prot
Match: FADI_SHEPW (3-ketoacyl-CoA thiolase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=fadI PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.006e-12
Identity = 37/80 (46.25%), Postives = 54/80 (67.50%), Query Frame = -3
Query:   36 ISPYRG-LXRDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRTGETAAVN 272
            + PY+  + RDNN+R ++ LE  A L PA+DR++G++TA NSTPLTDGAS VLL SE  A   G   + Y+++    A++
Sbjct:  231 VPPYKAFIDRDNNIRENSKLESYAKLRPAFDRKHGSVTAANSTPLTDGASAVLLMSEGRAKALGYTPIGYIKSYAFTAID 310          
BLAST of EY684984 vs. ExPASy Swiss-Prot
Match: FADI_SHEPA (3-ketoacyl-CoA thiolase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=fadI PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.006e-12
Identity = 37/80 (46.25%), Postives = 54/80 (67.50%), Query Frame = -3
Query:   36 ISPYRG-LXRDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRTGETAAVN 272
            + PY+  + RDNN+R ++ LE  A L PA+DR++G++TA NSTPLTDGAS VLL SE  A   G   + Y+++    A++
Sbjct:  231 VPPYKAFIDRDNNIRENSKLESYAKLRPAFDRKHGSVTAANSTPLTDGASAVLLMSEGRAKALGYTPIGYIKSYAFTAID 310          
BLAST of EY684984 vs. ExPASy Swiss-Prot
Match: FADI_SALSV (3-ketoacyl-CoA thiolase OS=Salmonella schwarzengrund (strain CVM19633) GN=fadI PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.006e-12
Identity = 42/102 (41.18%), Postives = 64/102 (62.75%), Query Frame = -3
Query:   36 SLQRWSPAYKQGLVDDSIS-----PYRG-LXRDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRTGETAAVN 323
            S QR + A+ +G + + +      PY+     DNN+R  ++L   A L PA+DR++G++TA NSTPLTDGA+ V+L +E+ A E GL  L YLR+    A++
Sbjct:  209 SHQRAAQAWAEGKLAEEVMTTYVPPYKNPFAEDNNIRGTSTLADYAKLRPAFDRKHGSVTAANSTPLTDGAAAVILMTESRAKELGLHPLGYLRSYAFTAID 310          
BLAST of EY684984 vs. ExPASy Swiss-Prot
Match: FADI_SALPC (3-ketoacyl-CoA thiolase OS=Salmonella paratyphi C (strain RKS4594) GN=fadI PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.006e-12
Identity = 42/102 (41.18%), Postives = 64/102 (62.75%), Query Frame = -3
Query:   36 SLQRWSPAYKQGLVDDSIS-----PYRG-LXRDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRTGETAAVN 323
            S QR + A+ +G + + +      PY+     DNN+R  ++L   A L PA+DR++G++TA NSTPLTDGA+ V+L +E+ A E GL  L YLR+    A++
Sbjct:  209 SHQRAAQAWAEGKLAEEVMTTYVPPYKNPFAEDNNIRGTSTLADYAKLRPAFDRKHGSVTAANSTPLTDGAAAVILMTESRAKELGLRPLGYLRSYAFTAID 310          
BLAST of EY684984 vs. ExPASy Swiss-Prot
Match: FADI_SALNS (3-ketoacyl-CoA thiolase OS=Salmonella newport (strain SL254) GN=fadI PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.006e-12
Identity = 42/102 (41.18%), Postives = 64/102 (62.75%), Query Frame = -3
Query:   36 SLQRWSPAYKQGLVDDSIS-----PYRG-LXRDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRTGETAAVN 323
            S QR + A+ +G + + +      PY+     DNN+R  ++L   A L PA+DR++G++TA NSTPLTDGA+ V+L +E+ A E GL  L YLR+    A++
Sbjct:  209 SHQRAAQAWAEGKLAEEVMTTYVPPYKNPFAEDNNIRGTSTLADYAKLRPAFDRKHGSVTAANSTPLTDGAAAVILMTESRAKELGLHPLGYLRSYAFTAID 310          
BLAST of EY684984 vs. ExPASy Swiss-Prot
Match: FADI_SALCH (3-ketoacyl-CoA thiolase OS=Salmonella choleraesuis GN=fadI PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.006e-12
Identity = 42/102 (41.18%), Postives = 64/102 (62.75%), Query Frame = -3
Query:   36 SLQRWSPAYKQGLVDDSIS-----PYRG-LXRDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRTGETAAVN 323
            S QR + A+ +G + + +      PY+     DNN+R  ++L   A L PA+DR++G++TA NSTPLTDGA+ V+L +E+ A E GL  L YLR+    A++
Sbjct:  209 SHQRAAQAWAEGKLAEEVMTTYVPPYKNPFTEDNNIRGTSTLADYAKLRPAFDRKHGSVTAANSTPLTDGAAAVILMTESRAKELGLRPLGYLRSYAFTAID 310          
The following BLAST results are available for this feature:
BLAST of EY684984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
FADI_SHEHH7.705e-1346.253-ketoacyl-CoA thiolase OS=Shewanella halifaxensis... [more]
FADI_PSEHT7.705e-1338.783-ketoacyl-CoA thiolase OS=Pseudoalteromonas halop... [more]
FADI_VIBF11.006e-1243.163-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain... [more]
FADI_SHESW1.006e-1246.253-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ... [more]
FADI_SHEPW1.006e-1246.253-ketoacyl-CoA thiolase OS=Shewanella piezotoleran... [more]
FADI_SHEPA1.006e-1246.253-ketoacyl-CoA thiolase OS=Shewanella pealeana (st... [more]
FADI_SALSV1.006e-1241.183-ketoacyl-CoA thiolase OS=Salmonella schwarzengru... [more]
FADI_SALPC1.006e-1241.183-ketoacyl-CoA thiolase OS=Salmonella paratyphi C ... [more]
FADI_SALNS1.006e-1241.183-ketoacyl-CoA thiolase OS=Salmonella newport (str... [more]
FADI_SALCH1.006e-1241.183-ketoacyl-CoA thiolase OS=Salmonella choleraesuis... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-007-C01-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684984 ID=EY684984; Name=EY684984; organism=Citrus sinensis; type=EST; length=883bp
CTTGCAGAACGGGTCCCGGAATTCCGGGTCGACGAATTCACCGCTGCGGT
TTCACCGGTTCGCAAATAAGCCAAAACCGGCAAGCCACGTTCGGCAGCCC
ATGCCTCGCTGGCCAGCAGCACCACCGAGGCGCCATCGGTCAGGGGCGTG
GAGTTGCCGGCGGTGAGCGTGCCGTTCTGGCGGTCGTAGGCCGGGGACAG
GCCGGCGAGTTTCTCCAGGCTGGTGTCGGCCCGCAGGTTGTTGTCCCGGG
NCAGGCCGCGATACGGGCTGATCGAATCATCGACCAAACCCTGCTTGTAA
GCCGGCGACCACCGCTGGAGACTAACTCAGGGCAAAGAAACCAAACCGCA
CCGAACTACCAACCACCACCCCCCCACACGCCCCAAACCACCCACACACA
CCCGACGGGAGACACACGGCAGAAAACCACCAACAGAGAGGAGGGGGGGG
GGGGGGAGTTCGAAGAAGACGGGTCAGTCCGCAGAACCGCGAAGCACTAA
AGCCAAACGTCTCACGCCGGCCCGCGCCTGCCACGCGACGAGGCACCACC
GACGCGGACCGCCCGCACAACCTGACTTAGAAAAACGAAATCATAAAAGA
CCAATGTATAACGGAAAAGAGGCAAGCGGCACTAGTCCGGCCCCCAGCCC
AGACCGTAAGACACCGTACCACCAAAGCCCCTCGAGCCCCCACCCCTCGG
AGGGGGCGGAAAGACAGACCCGCACCCCACCCCCCGCCCCCTCCGAGAAC
GACAGCCTGTCGGCAAGCCCGGCACCCGCCACCTCCGAACGAGGCCGCGC
TCACAAGGAACCGACAACCACAGGACCGCGCACCCGCCCCGGCGCCCACT
TCCCGAACACCGCCCCCACACGCGACAGGAAAA
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