EY684984

Overview
NameEY684984
Unique NameEY684984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684984 vs. ExPASy Swiss-Prot
Match: FADI_SHESR (3-ketoacyl-CoA thiolase OS=Shewanella sp. (strain MR-7) GN=fadI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.237e-11
Identity = 33/80 (41.25%), Postives = 53/80 (66.25%), Query Frame = -3
Query:   36 ISPYRG-LXRDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRTGETAAVN 272
            + PY+  + RDNN+R ++ L   A L PA+D+++G++TA NSTPLTDGAS ++L SE  A   G   + Y+++    A++
Sbjct:  231 VPPYKQFIERDNNIRENSDLSSYAKLRPAFDKKHGSVTAANSTPLTDGASAIILMSEGRAKALGYQPIGYIKSYAFTAID 310          
BLAST of EY684984 vs. ExPASy Swiss-Prot
Match: FADI_SHESM (3-ketoacyl-CoA thiolase OS=Shewanella sp. (strain MR-4) GN=fadI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.237e-11
Identity = 33/80 (41.25%), Postives = 53/80 (66.25%), Query Frame = -3
Query:   36 ISPYRG-LXRDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRTGETAAVN 272
            + PY+  + RDNN+R ++ L   A L PA+D+++G++TA NSTPLTDGAS ++L SE  A   G   + Y+++    A++
Sbjct:  231 VPPYKQFIERDNNIRENSDLSSYAKLRPAFDKKHGSVTAANSTPLTDGASAIILMSEGRAKALGYQPIGYIKSYAFTAID 310          
BLAST of EY684984 vs. ExPASy Swiss-Prot
Match: FADI_SHESA (3-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ANA-3) GN=fadI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.237e-11
Identity = 33/80 (41.25%), Postives = 53/80 (66.25%), Query Frame = -3
Query:   36 ISPYRG-LXRDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRTGETAAVN 272
            + PY+  + RDNN+R ++ L   A L PA+D+++G++TA NSTPLTDGAS ++L SE  A   G   + Y+++    A++
Sbjct:  231 VPPYKQFIERDNNIRENSDLSSYAKLRPAFDKKHGSVTAANSTPLTDGASAIILMSEGRAKALGYQPIGYIKSYAFTAID 310          
BLAST of EY684984 vs. ExPASy Swiss-Prot
Match: FADI_SHEAM (3-ketoacyl-CoA thiolase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=fadI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.237e-11
Identity = 38/99 (38.38%), Postives = 59/99 (59.60%), Query Frame = -3
Query:   36 VSLQRW-SPAYKQGLVDDSISPYRG-LXRDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRTGETAAVN 326
            ++ Q W S   K  ++   + PY   + +DNN+R  + L   A L P +DR++G++TA NSTPLTDGAS +LL SE  A   G   + Y+++   AA++
Sbjct:  212 LAAQTWASGVMKNEVMVAHVPPYNQFIEKDNNIRESSDLASYAKLRPVFDRKHGSVTAANSTPLTDGASALLLMSEGRAKALGYTPIGYIKSYAFAAID 310          
BLAST of EY684984 vs. ExPASy Swiss-Prot
Match: FADI_SHEON (3-ketoacyl-CoA thiolase OS=Shewanella oneidensis GN=fadI PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.228e-11
Identity = 33/80 (41.25%), Postives = 53/80 (66.25%), Query Frame = -3
Query:   36 ISPYRG-LXRDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRTGETAAVN 272
            + PY+  + RDNN+R ++ L   A L PA+D+++G++TA NSTPLTDGAS ++L SE  A   G   + Y+++    A++
Sbjct:  231 VPPYKQFIERDNNIRENSDLASYAKLRPAFDKKHGSVTAANSTPLTDGASAIILMSEGRAKALGYQPIGYIKSYAFTAID 310          
BLAST of EY684984 vs. ExPASy Swiss-Prot
Match: FADA_VIBFM (3-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain MJ11) GN=fadA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.228e-11
Identity = 43/112 (38.39%), Postives = 61/112 (54.46%), Query Frame = -3
Query:   15 SLQRWSPAYKQGLVDDSISPYRG---------LXRDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRTGETAAVNSSTRNSG 323
            S Q+   A  +G  D  I P  G         +  D  +R +T+LE LA L PA+D  NGT+TAG+S+ L+DGAS +L+ SE  A E GLP+ A +R+   +  + S    G
Sbjct:  172 SHQKAHKATIEGYFDSEILPIEGHDENGVLTLVTHDEVIRPETTLEGLAALRPAFDPANGTVTAGSSSALSDGASAMLVMSEEKANELGLPIRAKVRSMAVSGCDPSIMGYG 283          
BLAST of EY684984 vs. ExPASy Swiss-Prot
Match: FADA_VIBF1 (3-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=fadA PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.228e-11
Identity = 43/112 (38.39%), Postives = 61/112 (54.46%), Query Frame = -3
Query:   15 SLQRWSPAYKQGLVDDSISPYRG---------LXRDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRTGETAAVNSSTRNSG 323
            S Q+   A  +G  D  I P  G         +  D  +R +T+LE LA L PA+D  NGT+TAG+S+ L+DGAS +L+ SE  A E GLP+ A +R+   +  + S    G
Sbjct:  172 SHQKAHKATIEGYFDSEILPMEGHDENGALTLVTHDEVIRPETTLEGLAALRPAFDPANGTVTAGSSSALSDGASAMLVMSEEKANELGLPIRAKVRSMAVSGCDPSIMGYG 283          
BLAST of EY684984 vs. ExPASy Swiss-Prot
Match: FADA_ERWCT (3-ketoacyl-CoA thiolase OS=Erwinia carotovora subsp. atroseptica GN=fadA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.419e-11
Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = -3
Query:   15 DNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRTGETAAVNSSTRNSG 245
            D  +R DT+++ LA L PA+D  NGT+TAG+S+ L+DGAS +L+ SE+ AA  GLPV A +R       + S    G
Sbjct:  207 DEVIRPDTTIDSLAALKPAFDPVNGTVTAGSSSALSDGASAMLIMSESRAASLGLPVRARIRAMAVVGCDPSIMGYG 283          
The following BLAST results are available for this feature:
BLAST of EY684984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
FADI_SHESR3.237e-1141.253-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ... [more]
FADI_SHESM3.237e-1141.253-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ... [more]
FADI_SHESA3.237e-1141.253-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ... [more]
FADI_SHEAM3.237e-1138.383-ketoacyl-CoA thiolase OS=Shewanella amazonensis ... [more]
FADI_SHEON4.228e-1141.253-ketoacyl-CoA thiolase OS=Shewanella oneidensis G... [more]
FADA_VIBFM4.228e-1138.393-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain... [more]
FADA_VIBF14.228e-1138.393-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain... [more]
FADA_ERWCT9.419e-1145.453-ketoacyl-CoA thiolase OS=Erwinia carotovora subs... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-007-C01-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684984 ID=EY684984; Name=EY684984; organism=Citrus sinensis; type=EST; length=883bp
CTTGCAGAACGGGTCCCGGAATTCCGGGTCGACGAATTCACCGCTGCGGT
TTCACCGGTTCGCAAATAAGCCAAAACCGGCAAGCCACGTTCGGCAGCCC
ATGCCTCGCTGGCCAGCAGCACCACCGAGGCGCCATCGGTCAGGGGCGTG
GAGTTGCCGGCGGTGAGCGTGCCGTTCTGGCGGTCGTAGGCCGGGGACAG
GCCGGCGAGTTTCTCCAGGCTGGTGTCGGCCCGCAGGTTGTTGTCCCGGG
NCAGGCCGCGATACGGGCTGATCGAATCATCGACCAAACCCTGCTTGTAA
GCCGGCGACCACCGCTGGAGACTAACTCAGGGCAAAGAAACCAAACCGCA
CCGAACTACCAACCACCACCCCCCCACACGCCCCAAACCACCCACACACA
CCCGACGGGAGACACACGGCAGAAAACCACCAACAGAGAGGAGGGGGGGG
GGGGGGAGTTCGAAGAAGACGGGTCAGTCCGCAGAACCGCGAAGCACTAA
AGCCAAACGTCTCACGCCGGCCCGCGCCTGCCACGCGACGAGGCACCACC
GACGCGGACCGCCCGCACAACCTGACTTAGAAAAACGAAATCATAAAAGA
CCAATGTATAACGGAAAAGAGGCAAGCGGCACTAGTCCGGCCCCCAGCCC
AGACCGTAAGACACCGTACCACCAAAGCCCCTCGAGCCCCCACCCCTCGG
AGGGGGCGGAAAGACAGACCCGCACCCCACCCCCCGCCCCCTCCGAGAAC
GACAGCCTGTCGGCAAGCCCGGCACCCGCCACCTCCGAACGAGGCCGCGC
TCACAAGGAACCGACAACCACAGGACCGCGCACCCGCCCCGGCGCCCACT
TCCCGAACACCGCCCCCACACGCGACAGGAAAA
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