EY684978

Overview
NameEY684978
Unique NameEY684978
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1050
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY684978_ssr947 microsatellite EY684978_ssr947:947..958. BLAST: Citrus ESTs to Prunus persica proteins V1
EY684978_ssr1031 microsatellite EY684978_ssr1031:1031..1042. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12104 contig Csv1_Contig12104:493..1542. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY684978 vs. ExPASy Swiss-Prot
Match: ILVI_SALTY (Acetolactate synthase isozyme 3 large subunit OS=Salmonella typhimurium GN=ilvI PE=3 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 2.373e-14
Identity = 42/131 (32.06%), Postives = 66/131 (50.38%), Query Frame = 3
Query:    6 MLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILG-GKDAEGRFDFSTWREELDEHEVKYPLSFTTFEQSIPPPTAVRALPISTRG 395
            MLGMHGT  AN  +  +D++ A GVRFDDR T  L  +   A ++HIDID   I K     + V  D +L L+ +  +L     ++ + D   W ++++    +  L +    +SI P   +  L   T+G
Sbjct:  257 MLGMHGTYEANMTMHNADVIFAVGVRFDDRTTNNLAKYCPNATVLHIDIDPTSISKTVNADIPVVGDARLVLEQMLELLAQDAPSQPQDDIRDWWQQIESWRARQCLKYDAESESIKPQAVIETLWRLTKG 387          
BLAST of EY684978 vs. ExPASy Swiss-Prot
Match: ILVI_ECOLI (Acetolactate synthase isozyme 3 large subunit OS=Escherichia coli (strain K12) GN=ilvI PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 2.373e-14
Identity = 41/131 (31.30%), Postives = 65/131 (49.62%), Query Frame = 3
Query:    6 MLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFD-FSTWREELDEHEVKYPLSFTTFEQSIPPPTAVRALPISTRG 395
            MLGMHGT  AN  +  +D++ A GVRFDDR T  L  +   A ++HIDID   I K     + +  D +  L+ +  +L  + A    D    W +++++   +  L + T  + I P   +  L   T+G
Sbjct:  257 MLGMHGTYEANMTMHNADVIFAVGVRFDDRTTNNLAKYCPNATVLHIDIDPTSISKTVTADIPIVGDARQVLEQMLELLSQESAHQPLDEIRDWWQQIEQWRARQCLKYDTHSEKIKPQAVIETLWRLTKG 387          
BLAST of EY684978 vs. ExPASy Swiss-Prot
Match: ILVI_BUCSC (Acetolactate synthase large subunit OS=Buchnera aphidicola subsp. Schlechtendalia chinensis GN=ilvI PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 3.100e-14
Identity = 45/132 (34.09%), Postives = 68/132 (51.52%), Query Frame = 3
Query:    3 QMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRF-DFSTWREELDEHEVKYPLSFTTFEQSIPPPTAVRALPISTRG 395
            QMLGMHGT  AN A+  +D++LA GVRFDDR T  ++ +   A I+HIDID   I K    H+ +  + K  L+ I   +        F     W  ++   + K  L+F T   +I P + ++ +   T+G
Sbjct:  256 QMLGMHGTYEANMAMHYADVILAIGVRFDDRTTNNVKKYCPNATIIHIDIDPTSISKTITAHIPIVGNAKNVLQQILVFINSNMFVKEFYCLKKWWIKIQSWKNKNSLNFDTNSDNIKPQSVIKTIWKLTKG 387          
BLAST of EY684978 vs. ExPASy Swiss-Prot
Match: ILVB_LACLA (Acetolactate synthase large subunit OS=Lactococcus lactis subsp. lactis GN=ilvB PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.538e-13
Identity = 42/130 (32.31%), Postives = 71/130 (54.62%), Query Frame = 3
Query:    6 MLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSTWREELDEHEVKYPLSFTTFEQSIPPPTAVRALPISTRG 395
            M GMHG+  AN A+ ++D ++  G RFDDRV       A  A + HIDID+AE+GK  +  + + +DLK AL  + ++      + R DF+ W + + +++ K P ++      I P   ++ +   T+G
Sbjct:  261 MAGMHGSYAANMALVEADYIINLGSRFDDRVVSNPAKVAKNAVVAHIDIDAAELGKIVKTDIPILSDLKAALSRLLQL-----NKVRTDFNDWIKTVTKNKEKAPFTYEPQNHDIRPQETIKLIGEYTQG 385          
BLAST of EY684978 vs. ExPASy Swiss-Prot
Match: ILVB_CRYNE (Acetolactate synthase, mitochondrial OS=Cryptococcus neoformans GN=ILV2 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.846e-13
Identity = 45/135 (33.33%), Postives = 70/135 (51.85%), Query Frame = 3
Query:    6 MLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAK---------IVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSTWREELDEHEVKYPLSFTTFE--QSIPPPTAVRAL 377
            M+GMHG+ YAN+A+ ++D+L+A GVRFDDRVTGK++ FA  AK         I+H +I    I K  +  + V  D+  +L  +   +   D       S W       + +YP ++T  +  Q + P   V+ L
Sbjct:  393 MIGMHGSAYANFAMQEADVLIALGVRFDDRVTGKVDTFAPAAKAAAAEGRGGIIHFEIQPKNINKIVEAQIPVLGDVVASLAELVPQIEAVDR------SAWIGRCKATKERYPFTYTPSQEGQKLKPQEVVQEL 521          
BLAST of EY684978 vs. ExPASy Swiss-Prot
Match: ILVB_CRYNV (Acetolactate synthase, mitochondrial OS=Cryptococcus neoformans var. grubii GN=ILV2 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 7.635e-13
Identity = 45/135 (33.33%), Postives = 72/135 (53.33%), Query Frame = 3
Query:    6 MLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAK---------IVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSTWREELDEHEVKYPLSFTTFE--QSIPPPTAVRAL 377
            M+GMHG+ YAN+A+ ++D+L+A GVRFDDRVTGK++ FA  AK         I+H +I    I K  +  + V  D+   +  +  ++   +A    D S W       + +YP ++T  +  Q + P   V+ L
Sbjct:  393 MIGMHGSAYANFAMQEADVLIALGVRFDDRVTGKVDTFAPAAKAAAAEGRGGIIHFEIQPKNINKIVEAQIPVLGDV---VASLGELVPQIEA---VDRSAWIGRCKATKERYPFTYTPSQEGQKLKPQEVVQEL 521          
BLAST of EY684978 vs. ExPASy Swiss-Prot
Match: ILVI_BUCAP (Acetolactate synthase large subunit OS=Buchnera aphidicola subsp. Schizaphis graminum GN=ilvI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.701e-12
Identity = 42/130 (32.31%), Postives = 62/130 (47.69%), Query Frame = 3
Query:    6 MLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSTWREELDEHEVKYPLSFTTFEQSIPPPTAVRALPISTRG 395
            MLGMHGT  AN A+  SD++ A GVRFDDR T  L+ +   A I+H+DID   I K     + +  D K  LK +  ++  K  +       W   + + +    L +      I P   ++ L   T+G
Sbjct:  257 MLGMHGTYEANMAMHYSDVIFAIGVRFDDRTTNNLKKYCPNATILHVDIDPTSISKTVSADIPIVGDAKQVLKEMIELI--KKEKQIHSLKEWWSSIGKWKKIKSLEYNKKSNKIKPQKIIQTLFKLTKG 384          
BLAST of EY684978 vs. ExPASy Swiss-Prot
Match: ILVI_BUCAI (Acetolactate synthase large subunit OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ilvI PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 8.441e-12
Identity = 40/130 (30.77%), Postives = 62/130 (47.69%), Query Frame = 3
Query:    6 MLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINRILGGKDAEGRFDFSTWREELDEHEVKYPLSFTTFEQSIPPPTAVRALPISTRG 395
            MLGMHGT  AN  +  +D++ A GVRFDDR T  L  +   A ++H+DID   I K    ++ +  D K  L+ +  +L  K  +       W   + + +    L +      I P T ++ L   T+G
Sbjct:  257 MLGMHGTYEANMTMHHADVIFAIGVRFDDRTTNNLNKYCPNAIVLHVDIDPTSISKTVSANIPIVGDAKHVLQKMIELL--KKEKKISLLEDWWNTIKKWKKINSLQYNQLSNKIKPQTVIKTLFKLTKG 384          
BLAST of EY684978 vs. ExPASy Swiss-Prot
Match: ILVB_YEAST (Acetolactate synthase catalytic subunit, mitochondrial OS=Saccharomyces cerevisiae GN=ILV2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.146e-11
Identity = 45/136 (33.09%), Postives = 69/136 (50.74%), Query Frame = 3
Query:    6 MLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAK---------IVHIDIDSAEIGKNKQPHVSVCADLKLAL-KGINRILGGKDAEGRFDFSTWREELDEHEVKYPLSF--TTFEQSIPPPTAVRAL 377
            MLGMHG   AN AV  +DL++A G RFDDRVTG +  FA  A+         I+H ++    I K  Q  ++V  D    L K +++I   K+       S W  ++++ + +YP ++   T    I P T ++ L
Sbjct:  351 MLGMHGCATANLAVQNADLIIAVGARFDDRVTGNISKFAPEARRAAAEGRGGIIHFEVSPKNINKVVQTQIAVEGDATTNLGKMMSKIFPVKER------SEWFAQINKWKKEYPYAYMEETPGSKIKPQTVIKKL 480          
The following BLAST results are available for this feature:
BLAST of EY684978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
ILVI_SALTY2.373e-1432.06Acetolactate synthase isozyme 3 large subunit OS=S... [more]
ILVI_ECOLI2.373e-1431.30Acetolactate synthase isozyme 3 large subunit OS=E... [more]
ILVI_BUCSC3.100e-1434.09Acetolactate synthase large subunit OS=Buchnera ap... [more]
ILVB_LACLA1.538e-1332.31Acetolactate synthase large subunit OS=Lactococcus... [more]
ILVB_CRYNE5.846e-1333.33Acetolactate synthase, mitochondrial OS=Cryptococc... [more]
ILVB_CRYNV7.635e-1333.33Acetolactate synthase, mitochondrial OS=Cryptococc... [more]
ILVI_BUCAP1.701e-1232.31Acetolactate synthase large subunit OS=Buchnera ap... [more]
ILVI_BUCAI8.441e-1230.77Acetolactate synthase large subunit OS=Buchnera ap... [more]
ILVB_YEAST7.146e-1133.09Acetolactate synthase catalytic subunit, mitochond... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-007-B04-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684978 ID=EY684978; Name=EY684978; organism=Citrus sinensis; type=EST; length=1050bp
TGCAAATGCTAGGAATGCATGGGACTGTGTATGCAAATTATGCAGTCGAT
AAGAGTGATTTGTTGCTTGCTTTTGGGGTTAGGTTTGATGATCGTGTGAC
TGGGAAGCTTGAGGCTTTTGCTAGCCGAGCTAAGATTGTTCATATTGATA
TTGATTCTGCGGAGATTGGGAAGAATAAGCAGCCTCATGTGTCGGTCTGT
GCAGATTTGAAGTTGGCTTTGAAGGGAATTAATAGAATATTGGGGGGTAA
AGATGCTGAGGGTAGGTTTGATTTTTCAACTTGGAGGGAAGAGCTTGATG
AGCACGAGGTGAAATACCCTTTGAGTTTTACGACATTTGAACAGTCGATT
CCACCGCCGACTGCCGTTCGCGCTCTTCCCATCTCTACGAGGGGGGGGGG
GGGGGCGTTCACCATAGGGCTCCAACCCCACAAGAACTGCACTACTACAC
TCGGCCCAAAACACAACACATGCGCACCCGACCCCGCGGCACACCGCAGC
GGCGAGTGCCGGCGCCGCCGACGCCCGTCCAACCCGCACAACCACAGAGC
CCCCGCCACCCCAGCACACGGAGGGCAGGAACCCACAACACCACCAGCCC
ATCAACAAAAACGCCAGCATCGACGAAGAAGAGCAGACGCCAGCCAATAA
TCACACCAAGCCGAGCCCCCCAACATCCCCCGGCCCCAACAACAGCGAAG
CCCCGGCAAGACCAGAGCACAACCGACAACAACCGCAGGAGAAAAACAAA
CACCACAACACAACAACGAAGATCACCCGACAACCCCGCAGAGAGAGAAC
AACGCACACACCAGCCCCCGCACACAGGGGCGGCCGACCAGCGCGACAAC
CAGAGCCCACACGGCCACGGCAAGACAAGGCCAAGCCCACGGCCACCACG
ACACCCACACCCGCCGCACCCCTCAGCGCCCACTCTAGCGAAGACGCGCC
CGCCCGCCACAATGCAGGCACCCCCCACCAGCGACCCGCGACCGAACCAC
GCAACCCGAGCAACTGACACCGACACCGACCCCACCCACCCAACCCCCCG
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