EY710292
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS6_ACECL (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Acetabularia cliftonii GN=RBCS-6 PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 8.623e-19 Identity = 49/122 (40.16%), Postives = 65/122 (53.28%), Query Frame = 3 Query: 228 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFEL-ETGWVYREH-----HSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFL 575 M VW P K FET SYLPPL+DE + K++ Y+L + W CLEF + + E+ + Y D RYWTM KLPM+GCTD S + +++R + FD R VQ FL Sbjct: 43 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANAWTPCLEFAASDQAYAGNENCITMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLTEIQACTKAFPDAYIRLVCFDANRQVQISGFL 164
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS3_ACEAT (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia acetabulum GN=RBCS-3 PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 1.471e-18 Identity = 49/122 (40.16%), Postives = 66/122 (54.10%), Query Frame = 3 Query: 228 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFEL-ETGWVYREH-----HSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFL 575 M VW P K FET S+LPPL+DE + K++ Y+L + W CLEF + + E+ + Y D RYWTM KLPM+GCTDAS + +++R + FD R VQ FL Sbjct: 43 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILINSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDASQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFL 164
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS5_ACEAT (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia acetabulum GN=RBCS-5 PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 2.509e-18 Identity = 48/122 (39.34%), Postives = 65/122 (53.28%), Query Frame = 3 Query: 228 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFEL-ETGWVYREH-----HSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFL 575 M VW P K FET S+LPPL+DE + K++ Y+L + W CLEF + + E+ + Y D RYWTM KLPM+GCTD S + +++R + FD R VQ FL Sbjct: 44 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLVCFDANRQVQISGFL 165
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS2_ACEAT (Ribulose bisphosphate carboxylase small chain 2, chloroplastic (Fragment) OS=Acetabularia acetabulum GN=RBCS-2 PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 2.509e-18 Identity = 48/122 (39.34%), Postives = 65/122 (53.28%), Query Frame = 3 Query: 228 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFEL-ETGWVYREH-----HSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFL 575 M VW P K FET S+LPPL+DE + K++ Y+L + W CLEF + + E+ + Y D RYWTM KLPM+GCTD S + +++R + FD R VQ FL Sbjct: 34 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFL 155
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS1_ACEAT (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Acetabularia acetabulum GN=RBCS-1 PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 2.509e-18 Identity = 48/122 (39.34%), Postives = 65/122 (53.28%), Query Frame = 3 Query: 228 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFEL-ETGWVYREH-----HSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFL 575 M VW P K FET S+LPPL+DE + K++ Y+L + W CLEF + + E+ + Y D RYWTM KLPM+GCTD S + +++R + FD R VQ FL Sbjct: 43 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFL 164
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS1_ACECL (Ribulose bisphosphate carboxylase small chain 1 (Fragment) OS=Acetabularia cliftonii GN=RBCS-1 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 4.896e-14 Identity = 41/107 (38.32%), Postives = 54/107 (50.47%), Query Frame = 3 Query: 273 SYLPPLSDEALLKEISYLLRSGWIRCLEFELE------TGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFL 575 SYLPPL+DE + K++ Y+L + W CLEF R + Y D RYWTM KLPM+GCTD S + +++R + FD R VQ FL Sbjct: 2 SYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNDNCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFL 108
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS_PROHO (Ribulose bisphosphate carboxylase small chain OS=Prochlorothrix hollandica GN=cbbS PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 3.509e-12 Identity = 37/116 (31.90%), Postives = 63/116 (54.31%), Query Frame = 3 Query: 255 KKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLAAMHQASRF 602 +++ETLSYLPPLSD+ + ++I Y++R G+I +EF ++ YWTM KLP++ T Y + ++R +GFDN + Q +SF+ +H+ +R+ Sbjct: 8 RRYETLSYLPPLSDQQIARQIEYMVREGYIPAVEFNEDSD------------ATTCYWTMWKLPLFHATSTQEVLGEVRECRTEYPNCYIRVVGFDNIKQCQSVSFI--VHKPNRY 109
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS_SYNP2 (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=cbbS PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 4.583e-12 Identity = 36/116 (31.03%), Postives = 63/116 (54.31%), Query Frame = 3 Query: 255 KKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLAAMHQASRF 602 K++ETLSYLPPLSD+ + +++ Y++ G+I +EFE + +P + +WT+ KLP++ + A YS ++R +GFDN + Q +SF+ +R+ Sbjct: 8 KRYETLSYLPPLSDQQIARQVQYMMDQGYIPGIEFEKD---------PTPELH---HWTLWKLPLFNASSAQEVLNEVRECRSEYSDCYIRVVGFDNIKQCQTVSFIVYKPNQTRY 111
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS_SYNP6 (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=cbbS PE=1 SV=3) HSP 1 Score: 72.7886 bits (177), Expect = 7.817e-12 Identity = 38/116 (32.76%), Postives = 58/116 (50.00%), Query Frame = 3 Query: 255 KKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLAAMHQASRF 602 ++FET SYLPPLSD + +I Y++ G+ +EF HS+P + YWTM KLP++ C Y ++R GFDN + Q +SF+ +H+ R+ Sbjct: 10 RRFETFSYLPPLSDRQIAAQIEYMIEQGFHPLIEFN---------EHSNPEEF---YWTMWKLPLFDCKSPQQVLDEVRECRSEYGDCYIRVAGFDNIKQCQTVSFI--VHRPGRY 111
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS_ANASP (Ribulose bisphosphate carboxylase small chain OS=Anabaena sp. (strain PCC 7120) GN=cbbS PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 6.618e-11 Identity = 38/116 (32.76%), Postives = 61/116 (52.59%), Query Frame = 3 Query: 255 KKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLAAMHQASRF 602 +++ETLSYLPPL+D + K++ Y+L G+I +EF S P YWT+ KLP++G + Y ++R +GFDN + Q +SF+ +H+ SR+ Sbjct: 8 RRYETLSYLPPLTDVQIEKQVQYILSQGYIPAVEF---------NEVSEPTEL---YWTLWKLPLFGAKTSREVLAEVQSCRSQYPGHYIRVVGFDNIKQCQILSFI--VHKPSRY 109 The following BLAST results are available for this feature:
BLAST of EY710292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 110
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Sequences
The
following sequences are available for this feature:
EST sequence >EY710292 ID=EY710292; Name=EY710292; organism=Citrus sinensis; type=EST; length=1832bpback to top |