EY710292

Overview
NameEY710292
Unique NameEY710292
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1832
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS6_ACECL (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Acetabularia cliftonii GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 8.623e-19
Identity = 49/122 (40.16%), Postives = 65/122 (53.28%), Query Frame = 3
Query:  228 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFEL-ETGWVYREH-----HSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFL 575
            M VW P   K FET SYLPPL+DE + K++ Y+L + W  CLEF   +  +   E+       +  Y D RYWTM KLPM+GCTD S            +  +++R + FD  R VQ   FL
Sbjct:   43 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANAWTPCLEFAASDQAYAGNENCITMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLTEIQACTKAFPDAYIRLVCFDANRQVQISGFL 164          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS3_ACEAT (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia acetabulum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.471e-18
Identity = 49/122 (40.16%), Postives = 66/122 (54.10%), Query Frame = 3
Query:  228 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFEL-ETGWVYREH-----HSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFL 575
            M VW P   K FET S+LPPL+DE + K++ Y+L + W  CLEF   +  +   E+       +  Y D RYWTM KLPM+GCTDAS            +  +++R + FD  R VQ   FL
Sbjct:   43 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILINSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDASQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFL 164          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS5_ACEAT (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia acetabulum GN=RBCS-5 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.509e-18
Identity = 48/122 (39.34%), Postives = 65/122 (53.28%), Query Frame = 3
Query:  228 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFEL-ETGWVYREH-----HSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFL 575
            M VW P   K FET S+LPPL+DE + K++ Y+L + W  CLEF   +  +   E+       +  Y D RYWTM KLPM+GCTD S            +  +++R + FD  R VQ   FL
Sbjct:   44 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLVCFDANRQVQISGFL 165          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS2_ACEAT (Ribulose bisphosphate carboxylase small chain 2, chloroplastic (Fragment) OS=Acetabularia acetabulum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.509e-18
Identity = 48/122 (39.34%), Postives = 65/122 (53.28%), Query Frame = 3
Query:  228 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFEL-ETGWVYREH-----HSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFL 575
            M VW P   K FET S+LPPL+DE + K++ Y+L + W  CLEF   +  +   E+       +  Y D RYWTM KLPM+GCTD S            +  +++R + FD  R VQ   FL
Sbjct:   34 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFL 155          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS1_ACEAT (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Acetabularia acetabulum GN=RBCS-1 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.509e-18
Identity = 48/122 (39.34%), Postives = 65/122 (53.28%), Query Frame = 3
Query:  228 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFEL-ETGWVYREH-----HSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFL 575
            M VW P   K FET S+LPPL+DE + K++ Y+L + W  CLEF   +  +   E+       +  Y D RYWTM KLPM+GCTD S            +  +++R + FD  R VQ   FL
Sbjct:   43 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFL 164          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS1_ACECL (Ribulose bisphosphate carboxylase small chain 1 (Fragment) OS=Acetabularia cliftonii GN=RBCS-1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.896e-14
Identity = 41/107 (38.32%), Postives = 54/107 (50.47%), Query Frame = 3
Query:  273 SYLPPLSDEALLKEISYLLRSGWIRCLEFELE------TGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFL 575
            SYLPPL+DE + K++ Y+L + W  CLEF              R    +  Y D RYWTM KLPM+GCTD S            +  +++R + FD  R VQ   FL
Sbjct:    2 SYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNDNCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFL 108          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS_PROHO (Ribulose bisphosphate carboxylase small chain OS=Prochlorothrix hollandica GN=cbbS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.509e-12
Identity = 37/116 (31.90%), Postives = 63/116 (54.31%), Query Frame = 3
Query:  255 KKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLAAMHQASRF 602
            +++ETLSYLPPLSD+ + ++I Y++R G+I  +EF  ++                 YWTM KLP++  T               Y + ++R +GFDN +  Q +SF+  +H+ +R+
Sbjct:    8 RRYETLSYLPPLSDQQIARQIEYMVREGYIPAVEFNEDSD------------ATTCYWTMWKLPLFHATSTQEVLGEVRECRTEYPNCYIRVVGFDNIKQCQSVSFI--VHKPNRY 109          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS_SYNP2 (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=cbbS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.583e-12
Identity = 36/116 (31.03%), Postives = 63/116 (54.31%), Query Frame = 3
Query:  255 KKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLAAMHQASRF 602
            K++ETLSYLPPLSD+ + +++ Y++  G+I  +EFE +          +P  +   +WT+ KLP++  + A             YS  ++R +GFDN +  Q +SF+      +R+
Sbjct:    8 KRYETLSYLPPLSDQQIARQVQYMMDQGYIPGIEFEKD---------PTPELH---HWTLWKLPLFNASSAQEVLNEVRECRSEYSDCYIRVVGFDNIKQCQTVSFIVYKPNQTRY 111          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS_SYNP6 (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=cbbS PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 7.817e-12
Identity = 38/116 (32.76%), Postives = 58/116 (50.00%), Query Frame = 3
Query:  255 KKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLAAMHQASRF 602
            ++FET SYLPPLSD  +  +I Y++  G+   +EF           HS+P  +   YWTM KLP++ C                Y   ++R  GFDN +  Q +SF+  +H+  R+
Sbjct:   10 RRFETFSYLPPLSDRQIAAQIEYMIEQGFHPLIEFN---------EHSNPEEF---YWTMWKLPLFDCKSPQQVLDEVRECRSEYGDCYIRVAGFDNIKQCQTVSFI--VHRPGRY 111          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS_ANASP (Ribulose bisphosphate carboxylase small chain OS=Anabaena sp. (strain PCC 7120) GN=cbbS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.618e-11
Identity = 38/116 (32.76%), Postives = 61/116 (52.59%), Query Frame = 3
Query:  255 KKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLAAMHQASRF 602
            +++ETLSYLPPL+D  + K++ Y+L  G+I  +EF            S P      YWT+ KLP++G   +             Y   ++R +GFDN +  Q +SF+  +H+ SR+
Sbjct:    8 RRYETLSYLPPLTDVQIEKQVQYILSQGYIPAVEF---------NEVSEPTEL---YWTLWKLPLFGAKTSREVLAEVQSCRSQYPGHYIRVVGFDNIKQCQILSFI--VHKPSRY 109          
The following BLAST results are available for this feature:
BLAST of EY710292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
RBS6_ACECL8.623e-1940.16Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS3_ACEAT1.471e-1840.16Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS5_ACEAT2.509e-1839.34Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS2_ACEAT2.509e-1839.34Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS1_ACEAT2.509e-1839.34Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS1_ACECL4.896e-1438.32Ribulose bisphosphate carboxylase small chain 1 (F... [more]
RBS_PROHO3.509e-1231.90Ribulose bisphosphate carboxylase small chain OS=P... [more]
RBS_SYNP24.583e-1231.03Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_SYNP67.817e-1232.76Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_ANASP6.618e-1132.76Ribulose bisphosphate carboxylase small chain OS=A... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-097-B08-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710292 ID=EY710292; Name=EY710292; organism=Citrus sinensis; type=EST; length=1832bp
CCCGGGGTCGACCACGCGTCCCGCAAGCTAGAAGAAGGAGCAAGTACCAA
TGGGCTTCCCTCATGATCTCATCGACCACCGTTGCCACCGCGAACCGCGC
CAGCCTTGCTCAGGCCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTT
CTTCTGCTTTCCCAGCAACCAAGAAGACCAACAATGACATTACTTCCATT
GCAAGCAACGGCGGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTGG
CTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAG
CTTTGCTCAAGGAAATCAGTTACCTTCTCCGCTCCGGCTGGATTCGCTGC
TTGGAATTCGAGTTGGAGACAGGATGGGTGTACCGTGAGCACCACAGCTC
ACCANGATACTACGATGGACGCTACTGGACAATGGTGAAGCTGCCCATGT
ATGGGTGCACAGATGCATCCCAGGTTTAGAAGGATGTTGTGGAGGTCCAG
AAAGAATACTCACATTCATTCGTCCGATTTATCGGATTTGACAACAAGCG
TCANGTGCAGTGCATCAGTTTCCTTGCTGCCATGCACCAGGCGTCTAGGT
TCCCAATATAATTGTGTACCCCCCTGCGATATTGTGATTATTATATGTGG
AGCTCCAANATGTCCTCTCACCATGGGGGTACGGTTGCTGTCATTCGATC
TACGCTGCNTGTCGGCGNGCCACACTTTTTTGGTTTCTCCCCAGACTGGC
GTTTTTGTTATAATATATTAACAATTCGATCCTTGGTTCTCGTCCTCTAC
CCGGGCCCGGATGTCCTTAATGAGGGAAATATCTGAAGAAAAAAACATGA
TAGGGAGCTGCCAGAGTACCCGTTAATACGTGGCGGCGACTAACTTACTT
GTGCCCTATTCATACGCGGCCTGTTCTCACTGGGGGGGAACCGGTGTCCT
GTTGTGCACGAGACCCCCTCTCCGGGGTNATATAGAGCCNTCGTCCCTCC
TCACACACTTAGTGTAGGCCCTATGCGCCTCCGCGGGTGAGTTCNCTGCG
CTCCTCAGCCCACCTCCNCTTCTCTATCTCCTCTCGTCCACACAAGGACT
CTGATTATACGCCACCCGACTGATACGTGTGTTACGCACATATGCCGATC
GTCACGACGACGAGGCCCTCTTATGCTCGAGAATTCATGATGCTATGCGT
GATACTTAGTCTNCTACTCTGCTCTGCGACTGACTTGACTTCATCTATCA
CGAATCAGAATTAATATCAATTCTATATACTCTAATAATGATGACTGACC
TTCTGGCGCACCATCTGTCTANCTGTCTGCTACCGTCTCTTATTTCAANC
AGTGATACTTACTTAATTACGGAATATATGAGAATTACTGTATATGAANA
AAGATGCAATTAAATATNCTACGATGACTCACCGTNCTATGTCACCACCN
ACTCTGAGTNTACAANCATCCTAATCGTAANTCACATGCATGACTGATGA
CAATGCATGTATCATAAACAAACATATAACTTAACATATAAGTAACATAC
TATANATGTATTAATAAGATATGATATCGATGCANATATGGAAGACAAAT
CTTATGANTNAGTTTNATCAATATTTATGATTATNACACAATATATGTGC
ACTATATTTTGAAGATTTATACACAAATATATAGCAATTAGAATTTATAC
AACACAGTGCATCTCGTGAACTGNATTGCATTACACTGAGATATGCACGG
TATATACACTACNGANGTATGATGCATTACTGTGNATTACATCCATCCGA
TATAAGAGGACTCATGACATCATGTGAACTAT
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