EY710292

Overview
NameEY710292
Unique NameEY710292
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1832
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS3B_ARATH (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B PE=1 SV=2)

HSP 1 Score: 235.728 bits (600), Expect = 6.973e-61
Identity = 116/175 (66.29%), Postives = 133/175 (76.00%), Query Frame = 3
Query:   54 ASLMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578
            AS M+SS  V T    S AQA+MVAPFTGLKSS+AFP T+KTN DITSIASNGGRV CMKVWPP G KKFETLSYLP LSD  L KE+ YLLR+ WI C+EFELE G+VYREH ++P YYDGRYWTM KLP++GCTD++            Y  +F+R IGFDN R VQCISF+A
Sbjct:    2 ASSMLSSAAVVT----SPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIA 172          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS1_PETHY (Ribulose bisphosphate carboxylase small chain SSU8, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 6.973e-61
Identity = 115/175 (65.71%), Postives = 135/175 (77.14%), Query Frame = 3
Query:   54 ASLMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578
            AS +ISS  VAT  R ++AQASMVAPF GLKS+ +FP + K N DITSIASNGGRVQCM+VWPP G KK+ETLSYLP L+DE LLKEI YLL  GW+ CLEFE E G+VYRE+H+SP YYDGRYWTM KLPM+GCTDA+            Y ++++R IGFDN R VQCISF+A
Sbjct:    2 ASSVISSAAVAT--RTNVAQASMVAPFNGLKSAVSFPVSSKQNLDITSIASNGGRVQCMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGELQEAKKAYPNAWIRIIGFDNVRQVQCISFIA 174          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS2_BRANA (Ribulose bisphosphate carboxylase small chain F1, chloroplastic OS=Brassica napus GN=RBCS F1 PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 9.107e-61
Identity = 115/175 (65.71%), Postives = 134/175 (76.57%), Query Frame = 3
Query:   54 ASLMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578
            AS M+SS  V T    S AQA+MVAPFTGLKSS+AFP T+K NNDITSIASNGGRV CMKVWPP G KKFETLSYLP L++  L KE+ YLLR+ WI C+EFELE G+VYREH S+P YYDGRYWTM KLP++GCTD++            Y ++F+R IGFDN R VQCISF+A
Sbjct:    2 ASSMLSSAAVVT----SPAQATMVAPFTGLKSSAAFPVTRKANNDITSIASNGGRVSCMKVWPPVGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIA 172          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS4_SOYBN (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Glycine max GN=RBCS-4 PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 1.189e-60
Identity = 119/175 (68.00%), Postives = 129/175 (73.71%), Query Frame = 3
Query:   54 ASLMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578
            AS MISS  V T NRA    A MVAPFTGLKS +  P T+KTNNDITSIASNGGRVQCM+VWPP G KKFETLSYLP L D  L KE+ YLLR GWI CLEFELE G+VYREH+ S  YYDGRYWTM KLPM+GCTDAS            Y + F+R IGFDN R VQCISF+A
Sbjct:    2 ASSMISSPAVTTVNRAG---AGMVAPFTGLKSMAGLP-TRKTNNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSLGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIA 172          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS1_BRANA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Brassica napus GN=RBCS PE=2 SV=2)

HSP 1 Score: 234.958 bits (598), Expect = 1.189e-60
Identity = 115/175 (65.71%), Postives = 133/175 (76.00%), Query Frame = 3
Query:   54 ASLMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578
            AS M+SS  V T    S AQA+MVAPFTGLKSSSAFP T+K NNDITSI SNGGRV CMKVWPP G KKFETLSYLP L++  L KE+ YLLR+ WI C+EFELE G+VYREH S+P YYDGRYWTM KLP++GCTD++            Y ++F+R IGFDN R VQCISF+A
Sbjct:    2 ASSMLSSAAVVT----SPAQATMVAPFTGLKSSSAFPVTRKANNDITSIVSNGGRVSCMKVWPPVGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIA 172          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS_RAPSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Raphanus sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 1.553e-60
Identity = 115/175 (65.71%), Postives = 132/175 (75.43%), Query Frame = 3
Query:   54 ASLMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578
            AS M+SS  V T    S  QA+MVAPFTGLKSS+AFP T+KTN DITSIASNGGRV CMKVWPP G KKFETLSYLP LSD  L KE+ YLLR+ WI C+EFELE G+VYREH S+P YYDGRYWTM KLP++GCTD++            Y ++ +R IGFDN R VQCISF+A
Sbjct:    2 ASSMLSSAAVVT----SQLQATMVAPFTGLKSSAAFPVTRKTNTDITSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNALIRIIGFDNNRQVQCISFIA 172          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS_CAPAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 1.553e-60
Identity = 114/183 (62.30%), Postives = 138/183 (75.41%), Query Frame = 3
Query:   54 ASLMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLAAMHQASRF 602
            AS ++S+ TVAT   A+ AQASM+A F GLKS+++FP T+K + DITSIASNGGRV+CM VWPP   KK+ETLSYLP LSDE LLKEI YLL+ GW+ CLEFE E G+VYREHH SP YYDGRYWTM KLPM+GCTDA+            Y  +++R IGFDN R VQCISF+A   +A++F
Sbjct:    2 ASSVMSTATVATG--ANAAQASMIASFNGLKSAASFPVTRKQDLDITSIASNGGRVECMLVWPPINKKKYETLSYLPDLSDEQLLKEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDATQVLNEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEATKF 182          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS4_MESCR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 1.553e-60
Identity = 111/175 (63.43%), Postives = 133/175 (76.00%), Query Frame = 3
Query:   54 ASLMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578
            AS ++S+     A   + AQA+MVAPF GLKS SAFP T+K NNDITS+ASNGGRVQCM+VWPP G+KKFETLSYLPPLS+E+LLKE+ YLL +GW+ CLEFE   G+VYREH ++P YYDGRYWTM KLPM+GCTD S            Y  +F+R IGFDN R VQC+SF+A
Sbjct:    2 ASSLMSNAATTMAAATTTAQANMVAPFNGLKSISAFPVTRK-NNDITSVASNGGRVQCMQVWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIA 175          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS3B_SOLLC (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Solanum lycopersicum GN=RBCS-3B PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 1.553e-60
Identity = 114/175 (65.14%), Postives = 135/175 (77.14%), Query Frame = 3
Query:   54 ASLMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578
            AS ++SS  VAT  R + AQASMVAPFTGLKS+++FP ++K N DITSIASNGGRV CM+VWPP  +KK+ETLSYLP LSDE LL EI YLL++GW+ CLEFE E G+VYRE+H SP YYDGRYWTM KLPM+GCTDA+            Y  ++VR IGFDN R VQCISF+A
Sbjct:    2 ASSIVSSAAVAT--RGNGAQASMVAPFTGLKSTASFPVSRKQNLDITSIASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIA 174          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS2B_ARATH (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-2B PE=2 SV=2)

HSP 1 Score: 234.572 bits (597), Expect = 1.553e-60
Identity = 115/175 (65.71%), Postives = 132/175 (75.43%), Query Frame = 3
Query:   54 ASLMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578
            AS M SST V T    S AQA+MVAPFTGLKSS++FP T+K NNDITSI SNGGRV CMKVWPP G KKFETLSYLP LSD  L KE+ YLLR+ WI C+EFELE G+VYREH ++P YYDGRYWTM KLP++GCTD++            Y  +F+R IGFDN R VQCISF+A
Sbjct:    2 ASSMFSSTAVVT----SPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIA 172          
The following BLAST results are available for this feature:
BLAST of EY710292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
RBS3B_ARATH6.973e-6166.29Ribulose bisphosphate carboxylase small chain 3B, ... [more]
RBS1_PETHY6.973e-6165.71Ribulose bisphosphate carboxylase small chain SSU8... [more]
RBS2_BRANA9.107e-6165.71Ribulose bisphosphate carboxylase small chain F1, ... [more]
RBS4_SOYBN1.189e-6068.00Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS1_BRANA1.189e-6065.71Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_RAPSA1.553e-6065.71Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_CAPAN1.553e-6062.30Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS4_MESCR1.553e-6063.43Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS3B_SOLLC1.553e-6065.14Ribulose bisphosphate carboxylase small chain 3B, ... [more]
RBS2B_ARATH1.553e-6065.71Ribulose bisphosphate carboxylase small chain 2B, ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-097-B08-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710292 ID=EY710292; Name=EY710292; organism=Citrus sinensis; type=EST; length=1832bp
CCCGGGGTCGACCACGCGTCCCGCAAGCTAGAAGAAGGAGCAAGTACCAA
TGGGCTTCCCTCATGATCTCATCGACCACCGTTGCCACCGCGAACCGCGC
CAGCCTTGCTCAGGCCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTT
CTTCTGCTTTCCCAGCAACCAAGAAGACCAACAATGACATTACTTCCATT
GCAAGCAACGGCGGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTGG
CTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAG
CTTTGCTCAAGGAAATCAGTTACCTTCTCCGCTCCGGCTGGATTCGCTGC
TTGGAATTCGAGTTGGAGACAGGATGGGTGTACCGTGAGCACCACAGCTC
ACCANGATACTACGATGGACGCTACTGGACAATGGTGAAGCTGCCCATGT
ATGGGTGCACAGATGCATCCCAGGTTTAGAAGGATGTTGTGGAGGTCCAG
AAAGAATACTCACATTCATTCGTCCGATTTATCGGATTTGACAACAAGCG
TCANGTGCAGTGCATCAGTTTCCTTGCTGCCATGCACCAGGCGTCTAGGT
TCCCAATATAATTGTGTACCCCCCTGCGATATTGTGATTATTATATGTGG
AGCTCCAANATGTCCTCTCACCATGGGGGTACGGTTGCTGTCATTCGATC
TACGCTGCNTGTCGGCGNGCCACACTTTTTTGGTTTCTCCCCAGACTGGC
GTTTTTGTTATAATATATTAACAATTCGATCCTTGGTTCTCGTCCTCTAC
CCGGGCCCGGATGTCCTTAATGAGGGAAATATCTGAAGAAAAAAACATGA
TAGGGAGCTGCCAGAGTACCCGTTAATACGTGGCGGCGACTAACTTACTT
GTGCCCTATTCATACGCGGCCTGTTCTCACTGGGGGGGAACCGGTGTCCT
GTTGTGCACGAGACCCCCTCTCCGGGGTNATATAGAGCCNTCGTCCCTCC
TCACACACTTAGTGTAGGCCCTATGCGCCTCCGCGGGTGAGTTCNCTGCG
CTCCTCAGCCCACCTCCNCTTCTCTATCTCCTCTCGTCCACACAAGGACT
CTGATTATACGCCACCCGACTGATACGTGTGTTACGCACATATGCCGATC
GTCACGACGACGAGGCCCTCTTATGCTCGAGAATTCATGATGCTATGCGT
GATACTTAGTCTNCTACTCTGCTCTGCGACTGACTTGACTTCATCTATCA
CGAATCAGAATTAATATCAATTCTATATACTCTAATAATGATGACTGACC
TTCTGGCGCACCATCTGTCTANCTGTCTGCTACCGTCTCTTATTTCAANC
AGTGATACTTACTTAATTACGGAATATATGAGAATTACTGTATATGAANA
AAGATGCAATTAAATATNCTACGATGACTCACCGTNCTATGTCACCACCN
ACTCTGAGTNTACAANCATCCTAATCGTAANTCACATGCATGACTGATGA
CAATGCATGTATCATAAACAAACATATAACTTAACATATAAGTAACATAC
TATANATGTATTAATAAGATATGATATCGATGCANATATGGAAGACAAAT
CTTATGANTNAGTTTNATCAATATTTATGATTATNACACAATATATGTGC
ACTATATTTTGAAGATTTATACACAAATATATAGCAATTAGAATTTATAC
AACACAGTGCATCTCGTGAACTGNATTGCATTACACTGAGATATGCACGG
TATATACACTACNGANGTATGATGCATTACTGTGNATTACATCCATCCGA
TATAAGAGGACTCATGACATCATGTGAACTAT
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