EY710292

Overview
NameEY710292
Unique NameEY710292
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1832
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS_GLYTO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tomentella GN=RBCS PE=3 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 2.029e-60
Identity = 118/175 (67.43%), Postives = 129/175 (73.71%), Query Frame = 3
Query:   54 ASLMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578
            AS MISS  V T NRA    A  VAPFTGLKS + FP T+KTNNDI SIASNGGRVQCM+VWP TG KKFETLSYLP L D  L KE+ YLLR GWI CLEFELE G+VYRE+H SP YYDGRYWTM KLP++GCTDAS            Y + F+R IGFDN R VQCISF+A
Sbjct:    2 ASSMISSPAVTTVNRAG---AGTVAPFTGLKSMAGFP-TRKTNNDIASIASNGGRVQCMQVWPTTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPVFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIA 172          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS1A_ARATH (Ribulose bisphosphate carboxylase small chain 1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A PE=1 SV=2)

HSP 1 Score: 234.187 bits (596), Expect = 2.029e-60
Identity = 113/175 (64.57%), Postives = 134/175 (76.57%), Query Frame = 3
Query:   54 ASLMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578
            AS M+SS T+     AS AQA+MVAPF GLKSS+AFPAT+K NNDITSI SNGGRV CM+VWPP G KKFETLSYLP L+D  L KE+ YL+R+ WI C+EFELE G+VYREH +SP YYDGRYWTM KLP++GCTD++            Y ++F+R IGFDN R VQCISF+A
Sbjct:    2 ASSMLSSATMV----ASPAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIA 172          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS_STELP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Stellaria longipes GN=RBCS PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 2.650e-60
Identity = 115/180 (63.89%), Postives = 138/180 (76.67%), Query Frame = 3
Query:   54 ASLMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLAAMHQA 593
            AS ++SS  VAT  R++ AQASMVAPFTGLKS+++FP ++KTN DITSIASNGGRV+CM+VWPP  +KK+ETLSYLP LS E LL EI YLL++GW+ CLEFE E G+VYREH SSP YYDGRYWTM KLPM+GCTDA+            Y  + +R IGFDN R VQCISF+A   +A
Sbjct:    2 ASSIMSSAAVAT--RSNGAQASMVAPFTGLKSNASFPVSRKTNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLSSEQLLSEIEYLLKNGWVPCLEFETEHGFVYREHTSSPGYYDGRYWTMWKLPMFGCTDATQVAAEVQEAKKAYPDAHIRIIGFDNVRQVQCISFIAYKPEA 179          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS3A_SOLLC (Ribulose bisphosphate carboxylase small chain 3A/3C, chloroplastic OS=Solanum lycopersicum GN=RBCS-3A/3C PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 2.650e-60
Identity = 114/175 (65.14%), Postives = 135/175 (77.14%), Query Frame = 3
Query:   54 ASLMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578
            AS ++SS  VAT  R + AQASMVAPFTGLKS+++FP ++K N DITSIASNGGRV CM+VWPP  +KK+ETLSYLP LSDE LL EI YLL++GW+ CLEFE E G+VYRE+H SP YYDGRYWTM KLPM+GCTDA+            Y  ++VR IGFDN R VQCISF+A
Sbjct:    2 ASSVMSSAAVAT--RGNGAQASMVAPFTGLKSTASFPVSRKQNLDITSIASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIA 174          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBSB_SOLTU (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Solanum tuberosum GN=RBCS-2B PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 3.461e-60
Identity = 112/175 (64.00%), Postives = 137/175 (78.29%), Query Frame = 3
Query:   54 ASLMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578
            AS ++SS  VAT  RA+ AQASMV PFTGLKS+++FP ++K N DITSIASNGGRV+CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YLL++GW+ CLEFE E G+VYRE++ SP YYDGRYWTM KLPM+GCTDA+            Y  +++R IGFDN R VQCISF+A
Sbjct:    2 ASSIVSSAAVAT--RANGAQASMVGPFTGLKSTASFPVSRKQNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIA 174          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBSC_SOLTU (Ribulose bisphosphate carboxylase small chain 2C, chloroplastic OS=Solanum tuberosum GN=RBCS-2C PE=3 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 5.903e-60
Identity = 112/175 (64.00%), Postives = 137/175 (78.29%), Query Frame = 3
Query:   54 ASLMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578
            AS ++SS  VAT  R + AQASMVAPFTGLKS+++FP ++K N DITSIASNGGRV+CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YLL++GW+ CLEFE E G+VYRE++ SP YYDGRYWTM KLPM+GCTDA+            Y  +++R IGFDN R VQCISF+A
Sbjct:    2 ASSVMSSAAVAT--RGNGAQASMVAPFTGLKSTASFPVSRKQNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIA 174          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBSA_SOLTU (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum tuberosum GN=RBCS-2A PE=3 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 5.903e-60
Identity = 112/175 (64.00%), Postives = 137/175 (78.29%), Query Frame = 3
Query:   54 ASLMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578
            AS ++SS  VAT  R + AQASMVAPFTGLKS+++FP ++K N DITSIASNGGRV+CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YLL++GW+ CLEFE E G+VYRE++ SP YYDGRYWTM KLPM+GCTDA+            Y  +++R IGFDN R VQCISF+A
Sbjct:    2 ASSVMSSAAVAT--RGNGAQASMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIA 174          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS3_MESCR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 5.903e-60
Identity = 111/175 (63.43%), Postives = 132/175 (75.43%), Query Frame = 3
Query:   54 ASLMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578
            AS ++S+     A   + AQA+MVAPF GLKS SAFP T+K NNDITS+ASNGGRVQCM+VWPP G KKFETLSYLPPLS+E+L+KE+ YLL +GW+ CLEFE   G+VYREH ++P YYDGRYWTM KLPM+GCTD S            Y  +F+R IGFDN R VQCISF+A
Sbjct:    2 ASSLMSNAATTMAAATTTAQANMVAPFNGLKSVSAFPVTRK-NNDITSVASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIA 175          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS3_PEA (Ribulose bisphosphate carboxylase small chain 3A, chloroplastic OS=Pisum sativum GN=RBCS-3A PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 7.709e-60
Identity = 113/172 (65.70%), Postives = 129/172 (75.00%), Query Frame = 3
Query:   63 MISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578
            MISS+ V T +RAS  Q++ VAPF GLKS + FP  KK N DITSI SNGGRV+CM+VWPP G KKFETLSYLPPL+ + LLKE+ YLLR GW+ CLEFELE G+VYREH+ SP YYDGRYWTM KLPM+G TDAS            Y  +FVR IGFDN R VQCISF+A
Sbjct:    4 MISSSAVTTVSRASTVQSAAVAPFGGLKSMTGFPV-KKVNTDITSITSNGGRVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELEKGFVYREHNKSPGYYDGRYWTMWKLPMFGTTDASQVLKELDEVVAAYPQAFVRIIGFDNVRQVQCISFIA 174          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS2_MESCR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 7.709e-60
Identity = 115/175 (65.71%), Postives = 132/175 (75.43%), Query Frame = 3
Query:   54 ASLMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578
            AS+M   +  A   R + AQASMVAPFTGLKS SAFP TKK+N DITSIASNGGRVQCM+VWPP G KKFETLSYLPPLS+E+L+KE+ YLL +GW+ CLEFE   G+VYREH ++P YYDGRYWTM KLPM+GCTD S            Y  +F R IGFDN R VQCISF+A
Sbjct:    2 ASMM---SNAAVVGRTTPAQASMVAPFTGLKSVSAFPVTKKSN-DITSIASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFTRIIGFDNVRQVQCISFIA 172          
The following BLAST results are available for this feature:
BLAST of EY710292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
RBS_GLYTO2.029e-6067.43Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1A_ARATH2.029e-6064.57Ribulose bisphosphate carboxylase small chain 1A, ... [more]
RBS_STELP2.650e-6063.89Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3A_SOLLC2.650e-6065.14Ribulose bisphosphate carboxylase small chain 3A/3... [more]
RBSB_SOLTU3.461e-6064.00Ribulose bisphosphate carboxylase small chain 2B, ... [more]
RBSC_SOLTU5.903e-6064.00Ribulose bisphosphate carboxylase small chain 2C, ... [more]
RBSA_SOLTU5.903e-6064.00Ribulose bisphosphate carboxylase small chain 2A, ... [more]
RBS3_MESCR5.903e-6063.43Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS3_PEA7.709e-6065.70Ribulose bisphosphate carboxylase small chain 3A, ... [more]
RBS2_MESCR7.709e-6065.71Ribulose bisphosphate carboxylase small chain 2, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-097-B08-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710292 ID=EY710292; Name=EY710292; organism=Citrus sinensis; type=EST; length=1832bp
CCCGGGGTCGACCACGCGTCCCGCAAGCTAGAAGAAGGAGCAAGTACCAA
TGGGCTTCCCTCATGATCTCATCGACCACCGTTGCCACCGCGAACCGCGC
CAGCCTTGCTCAGGCCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTT
CTTCTGCTTTCCCAGCAACCAAGAAGACCAACAATGACATTACTTCCATT
GCAAGCAACGGCGGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTGG
CTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAG
CTTTGCTCAAGGAAATCAGTTACCTTCTCCGCTCCGGCTGGATTCGCTGC
TTGGAATTCGAGTTGGAGACAGGATGGGTGTACCGTGAGCACCACAGCTC
ACCANGATACTACGATGGACGCTACTGGACAATGGTGAAGCTGCCCATGT
ATGGGTGCACAGATGCATCCCAGGTTTAGAAGGATGTTGTGGAGGTCCAG
AAAGAATACTCACATTCATTCGTCCGATTTATCGGATTTGACAACAAGCG
TCANGTGCAGTGCATCAGTTTCCTTGCTGCCATGCACCAGGCGTCTAGGT
TCCCAATATAATTGTGTACCCCCCTGCGATATTGTGATTATTATATGTGG
AGCTCCAANATGTCCTCTCACCATGGGGGTACGGTTGCTGTCATTCGATC
TACGCTGCNTGTCGGCGNGCCACACTTTTTTGGTTTCTCCCCAGACTGGC
GTTTTTGTTATAATATATTAACAATTCGATCCTTGGTTCTCGTCCTCTAC
CCGGGCCCGGATGTCCTTAATGAGGGAAATATCTGAAGAAAAAAACATGA
TAGGGAGCTGCCAGAGTACCCGTTAATACGTGGCGGCGACTAACTTACTT
GTGCCCTATTCATACGCGGCCTGTTCTCACTGGGGGGGAACCGGTGTCCT
GTTGTGCACGAGACCCCCTCTCCGGGGTNATATAGAGCCNTCGTCCCTCC
TCACACACTTAGTGTAGGCCCTATGCGCCTCCGCGGGTGAGTTCNCTGCG
CTCCTCAGCCCACCTCCNCTTCTCTATCTCCTCTCGTCCACACAAGGACT
CTGATTATACGCCACCCGACTGATACGTGTGTTACGCACATATGCCGATC
GTCACGACGACGAGGCCCTCTTATGCTCGAGAATTCATGATGCTATGCGT
GATACTTAGTCTNCTACTCTGCTCTGCGACTGACTTGACTTCATCTATCA
CGAATCAGAATTAATATCAATTCTATATACTCTAATAATGATGACTGACC
TTCTGGCGCACCATCTGTCTANCTGTCTGCTACCGTCTCTTATTTCAANC
AGTGATACTTACTTAATTACGGAATATATGAGAATTACTGTATATGAANA
AAGATGCAATTAAATATNCTACGATGACTCACCGTNCTATGTCACCACCN
ACTCTGAGTNTACAANCATCCTAATCGTAANTCACATGCATGACTGATGA
CAATGCATGTATCATAAACAAACATATAACTTAACATATAAGTAACATAC
TATANATGTATTAATAAGATATGATATCGATGCANATATGGAAGACAAAT
CTTATGANTNAGTTTNATCAATATTTATGATTATNACACAATATATGTGC
ACTATATTTTGAAGATTTATACACAAATATATAGCAATTAGAATTTATAC
AACACAGTGCATCTCGTGAACTGNATTGCATTACACTGAGATATGCACGG
TATATACACTACNGANGTATGATGCATTACTGTGNATTACATCCATCCGA
TATAAGAGGACTCATGACATCATGTGAACTAT
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