EY710292

Overview
NameEY710292
Unique NameEY710292
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1832
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS1B_ARATH (Ribulose bisphosphate carboxylase small chain 1B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1B PE=1 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 7.709e-60
Identity = 113/175 (64.57%), Postives = 132/175 (75.43%), Query Frame = 3
Query:   54 ASLMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578
            AS M+SS  V T    S AQA+MVAPFTGLKSS++FP T+K NNDITSI SNGGRV CMKVWPP G KKFETLSYLP L+D  L KE+ YLLR+ WI C+EFELE G+VYREH ++P YYDGRYWTM KLP++GCTD++            Y  +F+R IGFDN R VQCISF+A
Sbjct:    2 ASSMLSSAAVVT----SPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIA 172          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS2_PEA (Ribulose bisphosphate carboxylase small chain 3C, chloroplastic OS=Pisum sativum GN=RBCS-3C PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 1.007e-59
Identity = 113/172 (65.70%), Postives = 129/172 (75.00%), Query Frame = 3
Query:   63 MISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578
            MISS+ V T +RAS  Q++ VAPF GLKS + FP  KK N DITSI SNGGRV+CM+VWPP G KKFETLSYLPPL+ + LLKE+ YLLR GW+ CLEFELE G+VYREH+ SP YYDGRYWTM KLPM+G TDAS            Y  +FVR IGFDN R VQCISF+A
Sbjct:    4 MISSSAVTTVSRASRGQSAAVAPFGGLKSMTGFPV-KKVNTDITSITSNGGRVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELEKGFVYREHNKSPGYYDGRYWTMWKLPMFGTTDASQVLKELDEVVAAYPQAFVRIIGFDNVRQVQCISFIA 174          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS5_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 2.243e-59
Identity = 114/175 (65.14%), Postives = 133/175 (76.00%), Query Frame = 3
Query:   54 ASLMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578
            AS M++ST  A   RA  AQ+SMVAPF GL+SS AFPAT+K NND++++ SNGGRV CM+VWPP GLKKFETLSYLPPLS E L KE+ YLLR+ W+ C+EF  E G+VYRE+H+SP YYDGRYWTM KLPM+GCTDAS            Y   FVR IGFDNKR VQCISF+A
Sbjct:    2 ASSMMAST--AAVARAGPAQSSMVAPFNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIA 173          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS1_AMAHP (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 2.243e-59
Identity = 109/175 (62.29%), Postives = 129/175 (73.71%), Query Frame = 3
Query:   54 ASLMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578
            AS M+S+  +AT    + AQASMVAPF GLKS + FP TKK++ND +S+ SNGGRVQCM+VWPP G KKFETLSYLPPLSD  LL ++ YLL  GWI C+EFELE  +VYRE+H SP Y DGRYWTM KLPMYGCTD +            Y  +F+R IGFDNKR VQC+SF+A
Sbjct:    2 ASSMLSNAAMATTAATAGAQASMVAPFNGLKSFATFPITKKSSNDFSSLPSNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIA 176          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS1_SOLTU (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum tuberosum GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 2.930e-59
Identity = 111/176 (63.07%), Postives = 136/176 (77.27%), Query Frame = 3
Query:   54 ASLMISSTTVATANRASLAQA-SMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578
            AS +ISS  VAT  R ++ QA SM+APFTGLKS++ FP ++K N DITSIASNGGRV+CM+VWPP  +KK+ETLSYLP L+DE LLKE+ YLL++GW+ CLEFE E G+VYRE+H SP YYDGRYWTM KLPM+GCTDA+            Y  +++R IGFDN R VQCISF+A
Sbjct:    2 ASSVISSAAVAT--RTNVTQAGSMIAPFTGLKSAATFPVSRKQNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLTDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQECKKSYPQAWIRIIGFDNVRQVQCISFIA 175          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS_TOBAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana tabacum GN=RBCS PE=1 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 3.826e-59
Identity = 110/175 (62.86%), Postives = 136/175 (77.71%), Query Frame = 3
Query:   54 ASLMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578
            AS ++SS  VAT  R+++AQA+MVAPFTGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP   KK+ETLSYLP LS E LL E+ YLL++GW+ CLEFE E G+VYRE++ SP YYDGRYWTM KLPM+GCTDA+            Y  +++R IGFDN R VQCISF+A
Sbjct:    2 ASSVLSSAAVAT--RSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIA 174          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS1_NICSY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana sylvestris GN=RBCS PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 3.826e-59
Identity = 110/175 (62.86%), Postives = 136/175 (77.71%), Query Frame = 3
Query:   54 ASLMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578
            AS ++SS  VAT  R+++AQA+MVAPFTGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP   KK+ETLSYLP LS E LL E+ YLL++GW+ CLEFE E G+VYRE++ SP YYDGRYWTM KLPM+GCTDA+            Y  +++R IGFDN R VQCISF+A
Sbjct:    2 ASSVLSSAAVAT--RSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIA 174          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS5_MESCR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-5 PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 4.997e-59
Identity = 111/175 (63.43%), Postives = 132/175 (75.43%), Query Frame = 3
Query:   54 ASLMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578
            AS ++S+     A   + AQA+MVAPF GLKS SAFP T+K NNDITS+ASNGGRVQCM VWPP G+KKFETLSYLPPLS+E+LLKE+ YLL +GW+ CLEFE   G+VYREH ++P YYDGRYWTM KLPM+GCTD S            Y  +F+R IGFDN R VQC+SF+A
Sbjct:    2 ASSLMSNAATTMAAATTTAQANMVAPFNGLKSISAFPVTRK-NNDITSVASNGGRVQCM-VWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIA 174          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS2_NICSY (Ribulose bisphosphate carboxylase small chain S41, chloroplastic OS=Nicotiana sylvestris PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 6.526e-59
Identity = 106/174 (60.92%), Postives = 133/174 (76.44%), Query Frame = 3
Query:   57 SLMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578
            + +I S+  A A   + AQASM+APFTGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP   KK+ETLSYLP LS+E LL+E+ YLL++GW+ CLEFE E G+VYRE++ SP YYDGRYWTM KLPM+GCTDA+            Y  +++R IGFDN R VQCISF+A
Sbjct:    2 AFLIMSSAAAVATGTNAAQASMIAPFTGLKSATSFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSEEQLLREVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIA 175          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS_MUSAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Musa acuminata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 1.113e-58
Identity = 113/175 (64.57%), Postives = 133/175 (76.00%), Query Frame = 3
Query:   54 ASLMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578
            +S+M+SS   AT  RAS AQ+SMVAPFTGLKS+SAFP T+K N D++ + SNGGRVQCMKVWP  G+KKFETLSYLP + DEAL+K+I YLLRS WI CLEF    G+V+RE+H SP YYDGRYWTM KLPM+GCTDA             Y H+F+R IGFDN R VQCISF+A
Sbjct:    3 SSMMVSSA--ATFTRASPAQSSMVAPFTGLKSASAFPVTRKPNADLSHLPSNGGRVQCMKVWPIEGVKKFETLSYLPTMKDEALVKQIEYLLRSKWIPCLEF-CPKGFVWRENHRSPGYYDGRYWTMWKLPMFGCTDAVQVAKEVEECKKEYPHAFIRIIGFDNNRQVQCISFIA 174          
The following BLAST results are available for this feature:
BLAST of EY710292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
RBS1B_ARATH7.709e-6064.57Ribulose bisphosphate carboxylase small chain 1B, ... [more]
RBS2_PEA1.007e-5965.70Ribulose bisphosphate carboxylase small chain 3C, ... [more]
RBS5_LEMGI2.243e-5965.14Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS1_AMAHP2.243e-5962.29Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS1_SOLTU2.930e-5963.07Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_TOBAC3.826e-5962.86Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_NICSY3.826e-5962.86Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS5_MESCR4.997e-5963.43Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS2_NICSY6.526e-5960.92Ribulose bisphosphate carboxylase small chain S41,... [more]
RBS_MUSAC1.113e-5864.57Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-097-B08-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710292 ID=EY710292; Name=EY710292; organism=Citrus sinensis; type=EST; length=1832bp
CCCGGGGTCGACCACGCGTCCCGCAAGCTAGAAGAAGGAGCAAGTACCAA
TGGGCTTCCCTCATGATCTCATCGACCACCGTTGCCACCGCGAACCGCGC
CAGCCTTGCTCAGGCCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTT
CTTCTGCTTTCCCAGCAACCAAGAAGACCAACAATGACATTACTTCCATT
GCAAGCAACGGCGGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTGG
CTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAG
CTTTGCTCAAGGAAATCAGTTACCTTCTCCGCTCCGGCTGGATTCGCTGC
TTGGAATTCGAGTTGGAGACAGGATGGGTGTACCGTGAGCACCACAGCTC
ACCANGATACTACGATGGACGCTACTGGACAATGGTGAAGCTGCCCATGT
ATGGGTGCACAGATGCATCCCAGGTTTAGAAGGATGTTGTGGAGGTCCAG
AAAGAATACTCACATTCATTCGTCCGATTTATCGGATTTGACAACAAGCG
TCANGTGCAGTGCATCAGTTTCCTTGCTGCCATGCACCAGGCGTCTAGGT
TCCCAATATAATTGTGTACCCCCCTGCGATATTGTGATTATTATATGTGG
AGCTCCAANATGTCCTCTCACCATGGGGGTACGGTTGCTGTCATTCGATC
TACGCTGCNTGTCGGCGNGCCACACTTTTTTGGTTTCTCCCCAGACTGGC
GTTTTTGTTATAATATATTAACAATTCGATCCTTGGTTCTCGTCCTCTAC
CCGGGCCCGGATGTCCTTAATGAGGGAAATATCTGAAGAAAAAAACATGA
TAGGGAGCTGCCAGAGTACCCGTTAATACGTGGCGGCGACTAACTTACTT
GTGCCCTATTCATACGCGGCCTGTTCTCACTGGGGGGGAACCGGTGTCCT
GTTGTGCACGAGACCCCCTCTCCGGGGTNATATAGAGCCNTCGTCCCTCC
TCACACACTTAGTGTAGGCCCTATGCGCCTCCGCGGGTGAGTTCNCTGCG
CTCCTCAGCCCACCTCCNCTTCTCTATCTCCTCTCGTCCACACAAGGACT
CTGATTATACGCCACCCGACTGATACGTGTGTTACGCACATATGCCGATC
GTCACGACGACGAGGCCCTCTTATGCTCGAGAATTCATGATGCTATGCGT
GATACTTAGTCTNCTACTCTGCTCTGCGACTGACTTGACTTCATCTATCA
CGAATCAGAATTAATATCAATTCTATATACTCTAATAATGATGACTGACC
TTCTGGCGCACCATCTGTCTANCTGTCTGCTACCGTCTCTTATTTCAANC
AGTGATACTTACTTAATTACGGAATATATGAGAATTACTGTATATGAANA
AAGATGCAATTAAATATNCTACGATGACTCACCGTNCTATGTCACCACCN
ACTCTGAGTNTACAANCATCCTAATCGTAANTCACATGCATGACTGATGA
CAATGCATGTATCATAAACAAACATATAACTTAACATATAAGTAACATAC
TATANATGTATTAATAAGATATGATATCGATGCANATATGGAAGACAAAT
CTTATGANTNAGTTTNATCAATATTTATGATTATNACACAATATATGTGC
ACTATATTTTGAAGATTTATACACAAATATATAGCAATTAGAATTTATAC
AACACAGTGCATCTCGTGAACTGNATTGCATTACACTGAGATATGCACGG
TATATACACTACNGANGTATGATGCATTACTGTGNATTACATCCATCCGA
TATAAGAGGACTCATGACATCATGTGAACTAT
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