EY710292
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS_TRIRP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1) HSP 1 Score: 228.024 bits (580), Expect = 1.454e-58 Identity = 109/173 (63.01%), Postives = 132/173 (76.30%), Query Frame = 3 Query: 63 MISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLAA 581 +ISS V T NRA + QA++ PFTGLKSS+ FP TKK NNDITSI SNG RV CM+VWPP G KKFETLSYLPPL+DE LLKE+ YLLR GW+ C+EFELE G+V+R+++SSP YYDGRYWTM +LP++G TDA+ Y +F+R IGFDN R VQCISF+A+ Sbjct: 3 LISSAAVTTINRAPV-QANLATPFTGLKSSAGFPVTKK-NNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQLLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLKEVAECKAEYPEAFIRIIGFDNVRQVQCISFIAS 173
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS6_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1) HSP 1 Score: 227.639 bits (579), Expect = 1.899e-58 Identity = 112/175 (64.00%), Postives = 131/175 (74.86%), Query Frame = 3 Query: 54 ASLMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578 AS M++ST A R AQ +MVAPF GL+SS AFPAT+K NND++++ SNGGRV CM+VWPP GLKKFETLSYLPPLS E L KE+ YLLR+ W+ C+EF E G+VYRE+H+SP YYDGRYWTM KLPM+GCTDAS Y FVR IGFDNKR VQCISF+A Sbjct: 2 ASSMMAST--AAVARVGPAQTNMVAPFNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIA 173
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS_SILPR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Silene pratensis GN=RBCS PE=2 SV=1) HSP 1 Score: 226.868 bits (577), Expect = 3.239e-58 Identity = 114/175 (65.14%), Postives = 135/175 (77.14%), Query Frame = 3 Query: 54 ASLMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578 ASLM S+ V TA+ A AQA+MVAPF+GLKS+SAFP ++K+N DITS+A+NGGRV CM+VWPP LKKFETLSYLP LS+E+LLKEI+YLL GW+ CLEFE+ VYRE++ SP YYDGRYWTM KLPM+GCTDAS Y + VR IGFDNKR VQCISF+A Sbjct: 2 ASLM-SNAAVVTASTA--AQANMVAPFSGLKSTSAFPVSRKSNVDITSLATNGGRVNCMQVWPPRNLKKFETLSYLPTLSEESLLKEINYLLIKGWVPCLEFEVGPAHVYRENNKSPGYYDGRYWTMWKLPMFGCTDASQVAAEVVECKNAYPDAHVRIIGFDNKRQVQCISFIA 173
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS2_AMAHP (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS2 PE=2 SV=1) HSP 1 Score: 226.868 bits (577), Expect = 3.239e-58 Identity = 113/177 (63.84%), Postives = 132/177 (74.58%), Query Frame = 3 Query: 54 ASLMISS--TTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578 AS M+S+ T VA A + AQA+MVAPF GLKS ++FP T+K+N DITSIASNGGRVQCM+VWPP G KKFETLSYLPPLSD LL ++ YLL GWI C+EFELE +VYRE+H SP Y DGRYWTM KLPMYGCTD + Y +F+R IGFDNKR VQC+SF+A Sbjct: 2 ASSMMSNAATAVAVAATSGGAQANMVAPFNGLKSIASFPVTRKSN-DITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPTAFIRIIGFDNKRQVQCVSFIA 177
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS4_FLAPR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Flaveria pringlei GN=RBCS4 PE=2 SV=1) HSP 1 Score: 226.098 bits (575), Expect = 5.525e-58 Identity = 108/170 (63.53%), Postives = 133/170 (78.24%), Query Frame = 3 Query: 72 STTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLAA 581 S+TVAT +RA+ AQA+MVAPFTGLKS++AFPATKK N D +++ SNGGRVQCMKVWPP G KK+ETLSYLP L++ L KE+ YLLR+ W+ CLEFELE G+VYRE+ SP YYDGRYWTM KLPM+GCTD++ Y +++R IGFDN R VQCISF+A+ Sbjct: 5 SSTVATVSRAAPAQANMVAPFTGLKSNAAFPATKKAN-DFSTLPSNGGRVQCMKVWPPLGKKKYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIAS 173
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS2_SPIOL (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1) HSP 1 Score: 226.098 bits (575), Expect = 5.525e-58 Identity = 107/175 (61.14%), Postives = 134/175 (76.57%), Query Frame = 3 Query: 54 ASLMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578 AS ++SS VAT +R AQASMVAPFTGLKS+ FPATKK N+DITS+ASNGGRVQCMKVWP +K++ETLSYLPPL+ + L +++ YLL + W+ CLEFE + G+VYREHH+SP YYDGRYWTM KLPM+GCTD + Y ++F+R IGFD+ R VQC+SF+A Sbjct: 2 ASSVLSSAAVATVSRTP-AQASMVAPFTGLKSTVGFPATKK-NDDITSLASNGGRVQCMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIA 174
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS3_AMAHP (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS3 PE=2 SV=1) HSP 1 Score: 225.328 bits (573), Expect = 9.424e-58 Identity = 111/175 (63.43%), Postives = 131/175 (74.86%), Query Frame = 3 Query: 54 ASLMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578 +SLM ++ T AS AQA+MVAPF GLKS ++FP T+K+N DITSIASNGGRVQCM+VWPP G KKFETLSYLPPLSD LL ++ YLL +GWI C+EFELE +VYRE+H SP Y DGRYWTM KLPMYGCTD + Y +F+R IGFDNKR VQC+SF+A Sbjct: 3 SSLMSNAITAVVG--ASGAQANMVAPFNGLKSIASFPVTRKSN-DITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNNGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIA 174
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS_HELAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1) HSP 1 Score: 224.942 bits (572), Expect = 1.231e-57 Identity = 106/170 (62.35%), Postives = 131/170 (77.06%), Query Frame = 3 Query: 72 STTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLAA 581 S++VAT +R + AQA+MVAPFTGLKS++AFP TKK N D +++ SNGGRVQCMKVWPP GLKK+ETLSYLPPL++ L KE+ YLLR W+ CLEFELE G+VYRE+ SP YYDGRYWTM KLPM+GCTD++ Y +++R IGFDN R VQCI F+A+ Sbjct: 5 SSSVATVSRTAPAQANMVAPFTGLKSNAAFPTTKKAN-DFSTLPSNGGRVQCMKVWPPLGLKKYETLSYLPPLTETQLAKEVDYLLRKKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELAECKKEYPQAWIRIIGFDNVRQVQCIMFIAS 173
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS2_LEMGI (Ribulose bisphosphate carboxylase small chain SSU26, chloroplastic OS=Lemna gibba GN=SSU26 PE=3 SV=1) HSP 1 Score: 224.172 bits (570), Expect = 2.099e-57 Identity = 110/175 (62.86%), Postives = 132/175 (75.43%), Query Frame = 3 Query: 54 ASLMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578 AS M++ST A RA AQ++MVAPF GL+SS AFPAT+K N +++++ SNGG+V CM+VWPP GLKKFETLSYLPPLS E L KE+ YLLR+ W+ C+EF E G+VYRE+H+SP YYDGRYWTM KLPM+GCTDAS Y FVR IGFDNKR VQCISF+A Sbjct: 2 ASSMMAST--AAVARAGPAQSNMVAPFNGLRSSVAFPATRKANKNLSTLPSNGGKVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIA 173
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS2_FLAPR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Flaveria pringlei GN=RBCS2 PE=2 SV=1) HSP 1 Score: 223.787 bits (569), Expect = 2.742e-57 Identity = 107/170 (62.94%), Postives = 132/170 (77.65%), Query Frame = 3 Query: 72 STTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLAA 581 S+TVAT +RA+ AQA+MVAPFTGLKS+ AFPATKK N D +++ SNGGRVQCMKVWPP G K++ETLSYLP L++ L KE+ YLLR+ W+ CLEFELE G+VYRE+ SP YYDGRYWTM KLPM+GCTD++ Y +++R IGFDN R VQCISF+A+ Sbjct: 5 SSTVATVSRAAPAQANMVAPFTGLKSNVAFPATKKAN-DFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIAS 173 The following BLAST results are available for this feature:
BLAST of EY710292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 110
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Sequences
The
following sequences are available for this feature:
EST sequence >EY710292 ID=EY710292; Name=EY710292; organism=Citrus sinensis; type=EST; length=1832bpback to top |