EY710292
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS4_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40B, chloroplastic OS=Lemna gibba GN=SSU40B PE=3 SV=1) HSP 1 Score: 219.55 bits (558), Expect = 5.171e-56 Identity = 110/175 (62.86%), Postives = 129/175 (73.71%), Query Frame = 3 Query: 54 ASLMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578 AS M++ST A A RA AQ +MV PF +SS FPAT+K NND++++ SNGGRV CM+VWPP GLKKFETLSYLPPLS E L KE+ YLLR+ W+ C+EF E G+VYRE+H+SP YYDGRYWTM KLPM+GCTDAS Y FVR IGFDNKR VQCISF+A Sbjct: 2 ASSMMASTAAAVA-RAGPAQTNMV-PFNACRSSVPFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIA 173
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS3_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40A, chloroplastic OS=Lemna gibba GN=SSU40A PE=3 SV=1) HSP 1 Score: 217.624 bits (553), Expect = 1.965e-55 Identity = 109/175 (62.29%), Postives = 129/175 (73.71%), Query Frame = 3 Query: 54 ASLMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578 AS M++ST A A RA AQ+SMV PF +SS FPAT+K NN+++++ NGGRV CM+VWPP GLKKFETLSYLPPLS E L KE+ YLLR+ W+ C+EF E G+VYRE+H+SP YYDGRYWTM KLPM+GCTDAS Y FVR IGFDNKR VQCISF+A Sbjct: 2 ASSMMASTAAAVA-RAGPAQSSMV-PFNACRSSVPFPATRKANNNLSTLPGNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIA 173
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS3_FRIAG (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2 SV=1) HSP 1 Score: 217.238 bits (552), Expect = 2.566e-55 Identity = 108/174 (62.07%), Postives = 133/174 (76.44%), Query Frame = 3 Query: 54 ASLMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFL 575 ++ M+SS VATA RA+ AQASMVAPF GLKS+SAFP T+K ++++ SNGGRVQCMKVWP GLKKFETLSYLP LS E+LLK+I YL+R+GW+ CLEF LE G+V R+++ SP YYDGRYWTM KLPM+GCTDA+ Y +F+R IGFDN R VQC+SF+ Sbjct: 4 SATMLSS--VATAARAAPAQASMVAPFVGLKSASAFPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFI 174
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS7_FLAPR (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Flaveria pringlei GN=RBCS7 PE=2 SV=1) HSP 1 Score: 215.698 bits (548), Expect = 7.467e-55 Identity = 102/164 (62.20%), Postives = 127/164 (77.44%), Query Frame = 3 Query: 90 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLAA 581 A A++AQA+MVAPFTGLKS++AFP TKK N D +++ASNGGRVQCMKVWPP G K++ETLSYLP L++ L KE+ YLLR+ W+ CLEFELE G+VYRE+ SP YYDGRYWTM KLPM+GCTD++ Y +++R IGFDN R VQCISF+A+ Sbjct: 6 ATVATVAQANMVAPFTGLKSNAAFPVTKKVN-DFSTLASNGGRVQCMKVWPPLGKKRYETLSYLPNLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIAS 168
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS1_LEMGI (Ribulose bisphosphate carboxylase small chain SSU1, chloroplastic OS=Lemna gibba GN=SSU1 PE=2 SV=2) HSP 1 Score: 215.312 bits (547), Expect = 9.752e-55 Identity = 105/173 (60.69%), Postives = 127/173 (73.41%), Query Frame = 3 Query: 60 LMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578 +M+S+ VA R AQ +MV F G +SS AFPAT+K NND++++ S+GGRV CM+VWPP GLKKFETLSYLPPLS E L KE+ YLLR+ W+ C+EF E G+VYRE+++SP YYDGRYWTM KLPM+GCTDAS Y FVR IGFDNKR VQCISF+A Sbjct: 1 MMVSTAAVA---RVRPAQTNMVGAFNGCRSSVAFPATRKANNDLSTLPSSGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENNASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIA 169
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS1_FRIAG (Ribulose bisphosphate carboxylase small chain 1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2 SV=1) HSP 1 Score: 215.312 bits (547), Expect = 9.752e-55 Identity = 108/174 (62.07%), Postives = 132/174 (75.86%), Query Frame = 3 Query: 54 ASLMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFL 575 +S M+SS VATA A+ AQASMVAPF GLKS+SAFP T+K ++++ SNGGRVQCMKVWP GLKKFETLSYLP LS E+LLK+I YL+R+GW+ CLEF LE G+V R+++ SP YYDGRYWTM KLPM+GCTDA+ Y +F+R IGFDN R VQC+SF+ Sbjct: 4 SSTMLSS--VATAACAAPAQASMVAPFVGLKSTSAFPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFI 174
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS3_FLAPR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Flaveria pringlei GN=RBCS3 PE=2 SV=1) HSP 1 Score: 214.542 bits (545), Expect = 1.663e-54 Identity = 101/164 (61.59%), Postives = 126/164 (76.83%), Query Frame = 3 Query: 90 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLAA 581 A A++AQA+MVAPFTGLKS++AFP TKK N D +++ SNGGRVQCMKVWPP G K++ETLSYLP L++ L KE+ YLLR+ W+ CLEFELE G+VYRE+ SP YYDGRYWTM KLPM+GCTD++ Y +++R IGFDN R VQCISF+A+ Sbjct: 6 ATVATVAQANMVAPFTGLKSNAAFPVTKKVN-DFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTESQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIAS 168
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS2_FRIAG (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2 SV=1) HSP 1 Score: 214.542 bits (545), Expect = 1.663e-54 Identity = 107/174 (61.49%), Postives = 132/174 (75.86%), Query Frame = 3 Query: 54 ASLMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFL 575 ++ M+SS VATA + AQASMVAPF GLKS+SAFP T+KT ++++ SNGGRVQCMKVWP GLKKFETLSYLP LS E+LLK+I YL+R+GW+ CLEF LE G+V R+++ SP YYDGRYWTM KLPM+GCTDA+ Y +F+R IGFDN R VQC+SF+ Sbjct: 4 SATMLSS--VATAACVAPAQASMVAPFVGLKSASAFPVTQKTVTGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFI 174
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS1_FLAPR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Flaveria pringlei GN=RBCS1 PE=2 SV=1) HSP 1 Score: 214.157 bits (544), Expect = 2.173e-54 Identity = 101/164 (61.59%), Postives = 126/164 (76.83%), Query Frame = 3 Query: 90 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLAA 581 A A++AQA+MVAPFTGLK+++AFP TKK N D +++ SNGGRVQCMKVWPP G KK+ETLSYLP L++ L KE+ YLLR+ W+ CLEFELE G+VYRE+ SP YYDGRYWTM KLPM+GCTD++ Y +++R IGFDN R VQCISF+A+ Sbjct: 6 ATVATVAQANMVAPFTGLKANAAFPVTKKVN-DFSTLPSNGGRVQCMKVWPPLGKKKYETLSYLPDLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIAS 168
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS5_FRIAG (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Fritillaria agrestis GN=RBCS5 PE=2 SV=1) HSP 1 Score: 213.772 bits (543), Expect = 2.837e-54 Identity = 107/174 (61.49%), Postives = 132/174 (75.86%), Query Frame = 3 Query: 54 ASLMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFL 575 ++ M+SS VATA A+ AQASMVAPF GLKS+SAFP T+KT ++++ SNGGRVQCMKVWP GLKKFETLSYLP LS E+LLK+I YL+R+GW+ CLEF LE G+V R+++ SP YYDGRYWTM KLPM+GCT A+ Y +F+R IGFDN R VQC+SF+ Sbjct: 4 SATMLSS--VATAACAAPAQASMVAPFVGLKSASAFPVTQKTATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTGAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFI 174 The following BLAST results are available for this feature:
BLAST of EY710292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 110
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Sequences
The
following sequences are available for this feature:
EST sequence >EY710292 ID=EY710292; Name=EY710292; organism=Citrus sinensis; type=EST; length=1832bpback to top |