EY710292

Overview
NameEY710292
Unique NameEY710292
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1832
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS_MAIZE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 7.005e-45
Identity = 85/157 (54.14%), Postives = 114/157 (72.61%), Query Frame = 3
Query:  108 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578
            + A+ VAPF GLKS+++ P  ++++  + ++ SNGGR++CM+VWP  G KKFETLSYLPPLS + LLK++ YLLR+GWI CLEF  + G+VYRE+ +SP YYDGRYWTM KLPM+GC DA+            Y  +F R IGFDN +  QC+SF+A
Sbjct:    9 SSATAVAPFQGLKSTASLPVARRSSRSLGNV-SNGGRIRCMQVWPAYGNKKFETLSYLPPLSTDDLLKQVDYLLRNGWIPCLEFS-KVGFVYRENSTSPCYYDGRYWTMWKLPMFGCNDATQVYKELQEAIKSYPDAFHRVIGFDNIKQTQCVSFIA 163          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS_AEGTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Aegilops tauschii GN=RBCS PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 5.930e-44
Identity = 82/158 (51.90%), Postives = 109/158 (68.99%), Query Frame = 3
Query:  108 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLAA 581
            + A+ VAPF GLKS++  P ++++N       SNGGR++CM+VWP  G+KKFETLSYLPPLS E LLK++ YL+RS W+ CLEF  + G+++REH+ SP YYDGRYWTM KLPM+GC   +            Y   + R IGFDN R VQ +SF+A+
Sbjct:    8 SSATSVAPFQGLKSTAGLPVSRRSNGASLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEGLLKQVDYLIRSKWVPCLEFR-KVGFIFREHNVSPGYYDGRYWTMWKLPMFGCPAPTQVIPEVEEVRKEYPDPYCRIIGFDNMRQVQSVSFIAS 164          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS_PINTH (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.012e-43
Identity = 88/166 (53.01%), Postives = 114/166 (68.67%), Query Frame = 3
Query:   90 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITS----IASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFL 575
            A  A    A++V+ FTGLKS++ FP++ K +N          SNGGRV+CM+VWPP G  KFETLSYLP L++E L+KE+ YLLR+ W+ CLEF+LE G + R+++ SP YYDGRYW M KLPM+GCT+AS            Y  +F+R IGFDN R VQCISF+
Sbjct:    2 ATGAGAGAATVVSAFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLPTLTEEQLVKEVEYLLRNKWVPCLEFDLE-GSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISFI 166          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS1_PEA (Ribulose bisphosphate carboxylase small chain, chloroplastic (Fragment) OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 3.254e-42
Identity = 81/129 (62.79%), Postives = 94/129 (72.87%), Query Frame = 3
Query:  192 TSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578
            T I SNG RV+CM+VWPP G KKFETLSYLPPL+ + LLKE+ YLLR GW+ CLEFEL  G+VY EH+ SP YYDGRYWTM KLPM+G TD +            Y  +FVR IGF+N R VQCISF+A
Sbjct:    2 TDITSNGERVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELLKGFVYGEHNKSPRYYDGRYWTMWKLPMFGTTDPAQVVKEVDEVVAAYPEAFVRVIGFNNVRQVQCISFIA 130          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 5.551e-42
Identity = 90/181 (49.72%), Postives = 121/181 (66.85%), Query Frame = 3
Query:   54 ASLMISSTTVATANRASLAQ---ASMVAPFTGLKSSSAFPATKKTNNDITS----IASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFL 575
            +S+M  S+T A A  A+ ++   +++V+ FTGLKS + FP++K  +N          SNG RV+CM+VWPP   KKFETLSYLP L+ E L+KE+ YLL++ W+ CLEFE E G + R + +SP YYDGRYW M KLPM+GCT+AS            Y ++F+R IGFDN R VQCISF+
Sbjct:    3 SSIMALSSTAAVAAVAAPSKTGNSNVVSAFTGLKSMAQFPSSKTMSNAGAEWEQKTTSNGSRVRCMQVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFE-EDGEIKRVYGNSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFI 182          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS_SACHY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Saccharum hybrid GN=RBCS PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.047e-40
Identity = 81/157 (51.59%), Postives = 107/157 (68.15%), Query Frame = 3
Query:  108 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578
            + A+  APF GLKS+++ P  +++   +  + SNGGR++CM+VWP  G KKFETLSYLPPL+ E LLK++ YLLR+ W+ CLEF  E G+VYRE+ +SP YYDGRYWTM KLPM+GCTDAS            Y       +GFDN R  Q ++F+A
Sbjct:    8 SSATAAAPFQGLKSTASLPVARRSTTSLAKV-SNGGRIRCMQVWPAYGNKKFETLSYLPPLTQEQLLKQVDYLLRNNWVPCLEFSKE-GFVYRENSTSPCYYDGRYWTMWKLPMFGCTDASQVYKELQEAIASYP-ELRAILGFDNIRQTQWLTFIA 161          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=RBCS PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 5.944e-36
Identity = 73/117 (62.39%), Postives = 86/117 (73.50%), Query Frame = 3
Query:  228 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578
            M+VWPP GLKKFETLSYLPPL+ E LL E++YLL  GWI  LEFE++ G+VYREH  SP YYDGRYWTM KLPM+G TD +               +FVRFIGF++KR VQCISF+A
Sbjct:    1 MQVWPPLGLKKFETLSYLPPLTTEQLLAEVNYLLVKGWIPPLEFEVKDGFVYREHDKSPGYYDGRYWTMWKLPMFGGTDPAQVVNEVEEVKKAPPDAFVRFIGFNDKREVQCISFIA 117          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS_MARPA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.114e-33
Identity = 75/177 (42.37%), Postives = 104/177 (58.76%), Query Frame = 3
Query:   63 MISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHS-FVRFIGFDNKRXVQCISFLAAMHQ 590
            +++S  V T   AS A  +  +    +++          +   T   +NG RV CM+VW P    KFETLSYLPPLS +AL K+I Y+++SGW  C+EF+++ G V RE  + P YYDGRYWTM KLPM+GCTD++            Y    ++R +GFDN R VQC SF+  +HQ
Sbjct:    4 VVASAAVVTPFAASAASTTKSSQIVSVQAGLKAGVFGGKSEWQTKTQTNGSRVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQ-GTVTREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASFI--VHQ 177          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 6.365e-30
Identity = 59/102 (57.84%), Postives = 76/102 (74.51%), Query Frame = 3
Query:  273 SYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578
            +YLPPLS EALLK++ YL+RS W+ CLEF  + G+++REH++SP YYDGRYWTM KLPM+GCTDA+            Y  ++VR IGFDN R VQC+SF+A
Sbjct:    1 AYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVINEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIA 101          
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS2_CHLRE (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-2 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.679e-22
Identity = 68/183 (37.16%), Postives = 90/183 (49.18%), Query Frame = 3
Query:   69 SSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEF-ELETGWVYREH-----HSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLAAMHQASR 599
            SS + A A  A     S V P   LK     PA K       + A+       M VW P   K FET SYLPPLSDE +  ++ Y++ +GWI CLEF E +  +V  E        S  YYD RYWTM KLPM+GC D              +  ++VR + FDN++ VQ + FL    +++R
Sbjct:    8 SSVSAAVARPAR----SSVRPMAALK-----PAVKAAPVAAPAQANQ------MMVWTPVNNKMFETFSYLPPLSDEQIAAQVDYIVANGWIPCLEFAESDKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKSAR 175          
The following BLAST results are available for this feature:
BLAST of EY710292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
RBS_MAIZE7.005e-4554.14Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_AEGTA5.930e-4451.90Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PINTH1.012e-4353.01Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_PEA3.254e-4262.79Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_LARLA5.551e-4249.72Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_SACHY1.047e-4051.59Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SPIOL5.944e-3662.39Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_MARPA2.114e-3342.37Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_WHEAT6.365e-3057.84Ribulose bisphosphate carboxylase small chain clon... [more]
RBS2_CHLRE1.679e-2237.16Ribulose bisphosphate carboxylase small chain 2, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-097-B08-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710292 ID=EY710292; Name=EY710292; organism=Citrus sinensis; type=EST; length=1832bp
CCCGGGGTCGACCACGCGTCCCGCAAGCTAGAAGAAGGAGCAAGTACCAA
TGGGCTTCCCTCATGATCTCATCGACCACCGTTGCCACCGCGAACCGCGC
CAGCCTTGCTCAGGCCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTT
CTTCTGCTTTCCCAGCAACCAAGAAGACCAACAATGACATTACTTCCATT
GCAAGCAACGGCGGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTGG
CTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAG
CTTTGCTCAAGGAAATCAGTTACCTTCTCCGCTCCGGCTGGATTCGCTGC
TTGGAATTCGAGTTGGAGACAGGATGGGTGTACCGTGAGCACCACAGCTC
ACCANGATACTACGATGGACGCTACTGGACAATGGTGAAGCTGCCCATGT
ATGGGTGCACAGATGCATCCCAGGTTTAGAAGGATGTTGTGGAGGTCCAG
AAAGAATACTCACATTCATTCGTCCGATTTATCGGATTTGACAACAAGCG
TCANGTGCAGTGCATCAGTTTCCTTGCTGCCATGCACCAGGCGTCTAGGT
TCCCAATATAATTGTGTACCCCCCTGCGATATTGTGATTATTATATGTGG
AGCTCCAANATGTCCTCTCACCATGGGGGTACGGTTGCTGTCATTCGATC
TACGCTGCNTGTCGGCGNGCCACACTTTTTTGGTTTCTCCCCAGACTGGC
GTTTTTGTTATAATATATTAACAATTCGATCCTTGGTTCTCGTCCTCTAC
CCGGGCCCGGATGTCCTTAATGAGGGAAATATCTGAAGAAAAAAACATGA
TAGGGAGCTGCCAGAGTACCCGTTAATACGTGGCGGCGACTAACTTACTT
GTGCCCTATTCATACGCGGCCTGTTCTCACTGGGGGGGAACCGGTGTCCT
GTTGTGCACGAGACCCCCTCTCCGGGGTNATATAGAGCCNTCGTCCCTCC
TCACACACTTAGTGTAGGCCCTATGCGCCTCCGCGGGTGAGTTCNCTGCG
CTCCTCAGCCCACCTCCNCTTCTCTATCTCCTCTCGTCCACACAAGGACT
CTGATTATACGCCACCCGACTGATACGTGTGTTACGCACATATGCCGATC
GTCACGACGACGAGGCCCTCTTATGCTCGAGAATTCATGATGCTATGCGT
GATACTTAGTCTNCTACTCTGCTCTGCGACTGACTTGACTTCATCTATCA
CGAATCAGAATTAATATCAATTCTATATACTCTAATAATGATGACTGACC
TTCTGGCGCACCATCTGTCTANCTGTCTGCTACCGTCTCTTATTTCAANC
AGTGATACTTACTTAATTACGGAATATATGAGAATTACTGTATATGAANA
AAGATGCAATTAAATATNCTACGATGACTCACCGTNCTATGTCACCACCN
ACTCTGAGTNTACAANCATCCTAATCGTAANTCACATGCATGACTGATGA
CAATGCATGTATCATAAACAAACATATAACTTAACATATAAGTAACATAC
TATANATGTATTAATAAGATATGATATCGATGCANATATGGAAGACAAAT
CTTATGANTNAGTTTNATCAATATTTATGATTATNACACAATATATGTGC
ACTATATTTTGAAGATTTATACACAAATATATAGCAATTAGAATTTATAC
AACACAGTGCATCTCGTGAACTGNATTGCATTACACTGAGATATGCACGG
TATATACACTACNGANGTATGATGCATTACTGTGNATTACATCCATCCGA
TATAAGAGGACTCATGACATCATGTGAACTAT
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