EY710292
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS_MAIZE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 7.005e-45 Identity = 85/157 (54.14%), Postives = 114/157 (72.61%), Query Frame = 3 Query: 108 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578 + A+ VAPF GLKS+++ P ++++ + ++ SNGGR++CM+VWP G KKFETLSYLPPLS + LLK++ YLLR+GWI CLEF + G+VYRE+ +SP YYDGRYWTM KLPM+GC DA+ Y +F R IGFDN + QC+SF+A Sbjct: 9 SSATAVAPFQGLKSTASLPVARRSSRSLGNV-SNGGRIRCMQVWPAYGNKKFETLSYLPPLSTDDLLKQVDYLLRNGWIPCLEFS-KVGFVYRENSTSPCYYDGRYWTMWKLPMFGCNDATQVYKELQEAIKSYPDAFHRVIGFDNIKQTQCVSFIA 163
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS_AEGTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Aegilops tauschii GN=RBCS PE=2 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 5.930e-44 Identity = 82/158 (51.90%), Postives = 109/158 (68.99%), Query Frame = 3 Query: 108 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLAA 581 + A+ VAPF GLKS++ P ++++N SNGGR++CM+VWP G+KKFETLSYLPPLS E LLK++ YL+RS W+ CLEF + G+++REH+ SP YYDGRYWTM KLPM+GC + Y + R IGFDN R VQ +SF+A+ Sbjct: 8 SSATSVAPFQGLKSTAGLPVSRRSNGASLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEGLLKQVDYLIRSKWVPCLEFR-KVGFIFREHNVSPGYYDGRYWTMWKLPMFGCPAPTQVIPEVEEVRKEYPDPYCRIIGFDNMRQVQSVSFIAS 164
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS_PINTH (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1) HSP 1 Score: 178.718 bits (452), Expect = 1.012e-43 Identity = 88/166 (53.01%), Postives = 114/166 (68.67%), Query Frame = 3 Query: 90 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITS----IASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFL 575 A A A++V+ FTGLKS++ FP++ K +N SNGGRV+CM+VWPP G KFETLSYLP L++E L+KE+ YLLR+ W+ CLEF+LE G + R+++ SP YYDGRYW M KLPM+GCT+AS Y +F+R IGFDN R VQCISF+ Sbjct: 2 ATGAGAGAATVVSAFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLPTLTEEQLVKEVEYLLRNKWVPCLEFDLE-GSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISFI 166
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS1_PEA (Ribulose bisphosphate carboxylase small chain, chloroplastic (Fragment) OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 173.711 bits (439), Expect = 3.254e-42 Identity = 81/129 (62.79%), Postives = 94/129 (72.87%), Query Frame = 3 Query: 192 TSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578 T I SNG RV+CM+VWPP G KKFETLSYLPPL+ + LLKE+ YLLR GW+ CLEFEL G+VY EH+ SP YYDGRYWTM KLPM+G TD + Y +FVR IGF+N R VQCISF+A Sbjct: 2 TDITSNGERVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELLKGFVYGEHNKSPRYYDGRYWTMWKLPMFGTTDPAQVVKEVDEVVAAYPEAFVRVIGFNNVRQVQCISFIA 130
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 5.551e-42 Identity = 90/181 (49.72%), Postives = 121/181 (66.85%), Query Frame = 3 Query: 54 ASLMISSTTVATANRASLAQ---ASMVAPFTGLKSSSAFPATKKTNNDITS----IASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFL 575 +S+M S+T A A A+ ++ +++V+ FTGLKS + FP++K +N SNG RV+CM+VWPP KKFETLSYLP L+ E L+KE+ YLL++ W+ CLEFE E G + R + +SP YYDGRYW M KLPM+GCT+AS Y ++F+R IGFDN R VQCISF+ Sbjct: 3 SSIMALSSTAAVAAVAAPSKTGNSNVVSAFTGLKSMAQFPSSKTMSNAGAEWEQKTTSNGSRVRCMQVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFE-EDGEIKRVYGNSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFI 182
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS_SACHY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Saccharum hybrid GN=RBCS PE=3 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 1.047e-40 Identity = 81/157 (51.59%), Postives = 107/157 (68.15%), Query Frame = 3 Query: 108 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578 + A+ APF GLKS+++ P +++ + + SNGGR++CM+VWP G KKFETLSYLPPL+ E LLK++ YLLR+ W+ CLEF E G+VYRE+ +SP YYDGRYWTM KLPM+GCTDAS Y +GFDN R Q ++F+A Sbjct: 8 SSATAAAPFQGLKSTASLPVARRSTTSLAKV-SNGGRIRCMQVWPAYGNKKFETLSYLPPLTQEQLLKQVDYLLRNNWVPCLEFSKE-GFVYRENSTSPCYYDGRYWTMWKLPMFGCTDASQVYKELQEAIASYP-ELRAILGFDNIRQTQWLTFIA 161
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=RBCS PE=1 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 5.944e-36 Identity = 73/117 (62.39%), Postives = 86/117 (73.50%), Query Frame = 3 Query: 228 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578 M+VWPP GLKKFETLSYLPPL+ E LL E++YLL GWI LEFE++ G+VYREH SP YYDGRYWTM KLPM+G TD + +FVRFIGF++KR VQCISF+A Sbjct: 1 MQVWPPLGLKKFETLSYLPPLTTEQLLAEVNYLLVKGWIPPLEFEVKDGFVYREHDKSPGYYDGRYWTMWKLPMFGGTDPAQVVNEVEEVKKAPPDAFVRFIGFNDKREVQCISFIA 117
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS_MARPA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 2.114e-33 Identity = 75/177 (42.37%), Postives = 104/177 (58.76%), Query Frame = 3 Query: 63 MISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHS-FVRFIGFDNKRXVQCISFLAAMHQ 590 +++S V T AS A + + +++ + T +NG RV CM+VW P KFETLSYLPPLS +AL K+I Y+++SGW C+EF+++ G V RE + P YYDGRYWTM KLPM+GCTD++ Y ++R +GFDN R VQC SF+ +HQ Sbjct: 4 VVASAAVVTPFAASAASTTKSSQIVSVQAGLKAGVFGGKSEWQTKTQTNGSRVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQ-GTVTREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASFI--VHQ 177
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 6.365e-30 Identity = 59/102 (57.84%), Postives = 76/102 (74.51%), Query Frame = 3 Query: 273 SYLPPLSDEALLKEISYLLRSGWIRCLEFELETGWVYREHHSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLA 578 +YLPPLS EALLK++ YL+RS W+ CLEF + G+++REH++SP YYDGRYWTM KLPM+GCTDA+ Y ++VR IGFDN R VQC+SF+A Sbjct: 1 AYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVINEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIA 101
BLAST of EY710292 vs. ExPASy Swiss-Prot
Match: RBS2_CHLRE (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-2 PE=1 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 1.679e-22 Identity = 68/183 (37.16%), Postives = 90/183 (49.18%), Query Frame = 3 Query: 69 SSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIRCLEF-ELETGWVYREH-----HSSPXYYDGRYWTMVKLPMYGCTDASXXXXXXXXXXXXYSHSFVRFIGFDNKRXVQCISFLAAMHQASR 599 SS + A A A S V P LK PA K + A+ M VW P K FET SYLPPLSDE + ++ Y++ +GWI CLEF E + +V E S YYD RYWTM KLPM+GC D + ++VR + FDN++ VQ + FL +++R Sbjct: 8 SSVSAAVARPAR----SSVRPMAALK-----PAVKAAPVAAPAQANQ------MMVWTPVNNKMFETFSYLPPLSDEQIAAQVDYIVANGWIPCLEFAESDKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKSAR 175 The following BLAST results are available for this feature:
BLAST of EY710292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 110
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >EY710292 ID=EY710292; Name=EY710292; organism=Citrus sinensis; type=EST; length=1832bpback to top |