EY684920

Overview
NameEY684920
Unique NameEY684920
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length965
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684920 vs. ExPASy Swiss-Prot
Match: PSAD_SYNEN (Photosystem I reaction center subunit II OS=Synechococcus elongatus naegeli GN=psaD PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 7.676e-41
Identity = 81/130 (62.31%), Postives = 98/130 (75.38%), Query Frame = 1
Query:  118 PIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGT-RLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYD 504
            P++GGSTGGLL  A  EE Y ITW SPKEQ+FEMPT GAA+MREG NL+  ARKEQCLAL   +LR +    Y+ YR+FP+GE   +HPKDGV+PEKVN GRE V    RSIG+N +P ++KFTGK+ YD
Sbjct:    9 PLYGGSTGGLLSAADTEEKYAITWTSPKEQVFEMPTAGAAVMREGENLVYFARKEQCLALAAQQLRPRKINDYKIYRIFPDGETVLIHPKDGVFPEKVNKGREAVNSVPRSIGQNPNPSQLKFTGKKPYD 138          
BLAST of EY684920 vs. ExPASy Swiss-Prot
Match: PSAD_NOSS8 (Photosystem I reaction center subunit II OS=Nostoc sp. (strain PCC 8009) GN=psaD PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.809e-40
Identity = 83/131 (63.36%), Postives = 100/131 (76.34%), Query Frame = 1
Query:  115 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIK-YQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYD 504
            +P+F GSTGGLL KA VEE Y ITW SPK Q+FE+PTGGAA M +G NLL LARKEQ +ALG +LR K+KI  Y+ YR+FPNGE  ++HP DGV+PEKVN GRE V    R IG+N SP ++KF+GK  YD
Sbjct:    8 TPLFAGSTGGLLTKANVEEKYAITWTSPKAQVFELPTGGAATMNQGENLLYLARKEQGIALGGQLR-KFKITDYKIYRIFPNGETTFIHPADGVFPEKVNEGREKVRFVPRRIGQNPSPAQLKFSGKYTYD 137          
BLAST of EY684920 vs. ExPASy Swiss-Prot
Match: PSAD_ANAVT (Photosystem I reaction center subunit II OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=psaD PE=1 SV=3)

HSP 1 Score: 165.236 bits (417), Expect = 4.975e-40
Identity = 82/131 (62.60%), Postives = 100/131 (76.34%), Query Frame = 1
Query:  115 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYD 504
            +P+F GSTGGLL KA  EE Y ITW SPK Q+FE+PTGGAA M EG NLL +ARKE  +ALG +LR K+KI  Y+ YR+ P+GE  ++HP DGV+PEKVNPGRE V  N RSIG+N +P +VKF+GK  YD
Sbjct:    9 TPLFAGSTGGLLTKAVEEEKYAITWTSPKAQVFELPTGGAATMHEGENLLYIARKEYGIALGGQLR-KFKITNYKIYRILPSGETTFIHPADGVFPEKVNPGREKVRFNARSIGENPNPSQVKFSGKATYD 138          
BLAST of EY684920 vs. ExPASy Swiss-Prot
Match: PSAD_ANASP (Photosystem I reaction center subunit II OS=Anabaena sp. (strain PCC 7120) GN=psaD PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 4.212e-39
Identity = 81/131 (61.83%), Postives = 99/131 (75.57%), Query Frame = 1
Query:  115 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYD 504
            +P+F GSTGGLL KA  EE Y ITW SPK Q+FE+PTGGAA M EG NLL +ARKE  +ALG +LR K+KI  Y+ YR+ P+GE  ++HP DGV+PEKVN GRE V  N RSIG+N +P +VKF+GK  YD
Sbjct:    9 TPLFAGSTGGLLTKAVEEEKYAITWTSPKAQVFELPTGGAATMHEGENLLYIARKEYGIALGGQLR-KFKITNYKIYRILPSGETTFIHPADGVFPEKVNAGREKVRFNARSIGENPNPSQVKFSGKATYD 138          
BLAST of EY684920 vs. ExPASy Swiss-Prot
Match: PSAD_GLOVI (Photosystem I reaction center subunit II OS=Gloeobacter violaceus GN=psaD PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.730e-38
Identity = 82/139 (58.99%), Postives = 101/139 (72.66%), Query Frame = 1
Query:   94 ELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIK-YQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYDL 507
            EL     +P+FGGSTGGLLRKAQ+EE Y+I W S +EQ+FEMPTGGAA M  G N+L LARKEQC AL  +L S +KI+  + YRV+PNGE   + P DGV  EK NPGRE VG   R IG N +P++VKFTGK+ +D+
Sbjct:    6 ELPFGGSTPLFGGSTGGLLRKAQIEEKYLIVWNSKEEQVFEMPTGGAATMVAGTNVLYLARKEQCHALHRQLVSTFKIRDSKIYRVYPNGEQVLIFPMDGVPSEKSNPGREVVGYVPRKIGDNPNPVDVKFTGKETFDV 144          
BLAST of EY684920 vs. ExPASy Swiss-Prot
Match: PSAD_FREDI (Photosystem I reaction center subunit II OS=Fremyella diplosiphon GN=psaD PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.037e-37
Identity = 79/131 (60.31%), Postives = 98/131 (74.81%), Query Frame = 1
Query:  115 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIK-YQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNYRSIGKNVSPIEVKFTGKQVYD 504
            +P+F GSTGGLL+KA+VEE Y ITW SPK Q+FE+PTGGAA M++G NLL LARKE  +ALG +LR K+KI  Y+ YR+ P GE   +HP DGV+PEKVN GRE V    R IG+N +P  +KF+GK  YD
Sbjct:    8 TPLFAGSTGGLLKKAEVEEKYAITWTSPKAQVFELPTGGAATMQQGQNLLYLARKEYGIALGGQLR-KFKITDYKIYRILPGGETTLIHPADGVFPEKVNAGREKVRFVPRRIGENPNPSAIKFSGKYTYD 137          
The following BLAST results are available for this feature:
BLAST of EY684920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
PSAD_SYNEN7.676e-4162.31Photosystem I reaction center subunit II OS=Synech... [more]
PSAD_NOSS83.809e-4063.36Photosystem I reaction center subunit II OS=Nostoc... [more]
PSAD_ANAVT4.975e-4062.60Photosystem I reaction center subunit II OS=Anabae... [more]
PSAD_ANASP4.212e-3961.83Photosystem I reaction center subunit II OS=Anabae... [more]
PSAD_GLOVI2.730e-3858.99Photosystem I reaction center subunit II OS=Gloeob... [more]
PSAD_FREDI1.037e-3760.31Photosystem I reaction center subunit II OS=Fremye... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-005-C09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684920 ID=EY684920; Name=EY684920; organism=Citrus sinensis; type=EST; length=965bp
CATAATGCCCCACGTACCCACACCATCAAGGCCATGGCTGAGGGAAAAAC
AGAGACACCCACAAAAGAGGCTCCGGTGGGCTTCACCCCACCAGAACTGG
ACCCCAACACCCCATCTCCGATCTTCGGAGGCAGCACCGGCGGGCTGCTG
CGGAAGGCTCAGGTGGAAGAGTTTTATGTGATCACATGGGAGTCTCCTAA
GGAGCAAATATTTGAAATGCCCACTGGGGGTGCGGCCATTATGAGAGAAG
GTCCGAATTTGCTGAAGCTGGCTAGGAAAGAGCAGTGCTTGGCTCTGGGG
ACAAGGCTGAGGTCCAAGTACAAGATTAAGTACCAGTTTTACCGAGTGTT
TCCCAATGGAGAGGTTCAGTATTTGCATCCCAAGGATGGTGTTTATCCTG
AGAAAGTGAACCCTGGAAGGGAAGGAGTTGGGCAGAATTACAGGTCTATT
GGTAAGAATGTGAGTCCTATTGAGGTCAAGTTTACAGGGAAGCAAGTGTA
TGATCTGTAAATTTAAATTGGAAGCTGCTAAGCTGACGGGCCTCCGATGA
TCTGTTGATTAATTGTTGTGATCATTTACTTGTATCTATCCGTGCTTTCA
TTCCCCCAAAAATATTGTAATGAAGGCCAAACTAGATCACTACAAACTAT
TTTAAACCGGCGAAATCCCCTTTCTACTATTACACGAGAAATGGGAATCT
AGAAAAGCTTGAAAACGAATCAGAAAACACGGGGAGATGGATACCATAAG
CTTACGAAGGCATTGGCCCCCAACCAGGAGGAAACGAGAGAACGACACGC
CAGGACAACGATGCACGCCGTCCCAAACCACCTCAGACTCTCCTCGCCGG
ACCCTGAGCAACAACCGCGAAGAAGAAAACCACTACACGCCACCAGACCC
CAATCGCAATCCGCATCGAATGCCACAAGCGACGAAAAAACAACCAAGCC
CACGAGATACCGCGG
back to top