EY710281

Overview
NameEY710281
Unique NameEY710281
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length975
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710281 vs. ExPASy Swiss-Prot
Match: SODE_MOUSE (Extracellular superoxide dismutase [Cu-Zn] OS=Mus musculus GN=Sod3 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.671e-16
Identity = 50/141 (35.46%), Postives = 69/141 (48.94%), Query Frame = 1
Query:  130 VKGTVSFAQEGDGPT-----TVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELNKSTGNAGGRVACGIIG 537
            + G V F Q G G       ++ G  +         HVH  GD + GC STGPH+NP    H     D  +               T +       L+GP++I+GR+VVVHA  DDLGKGG++ +   GNAG R+AC ++G
Sbjct:   92 ITGLVLFRQLGPGSRLEAYFSLEGFPAEQNASNRAIHVHEFGDLSQGCDSTGPHYNPMEVPHPQHPGDFGNFVVRNGQLWRHRVGLTAS-------LAGPHAILGRSVVVHAGEDDLGKGGNQASLQNGNAGRRLACCVVG 225          
BLAST of EY710281 vs. ExPASy Swiss-Prot
Match: SODCP_POPTM (Superoxide dismutase [Cu-Zn], chloroplastic OS=Populus tremuloides GN=SODCP PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 9.017e-13
Identity = 32/43 (74.42%), Postives = 39/43 (90.70%), Query Frame = 1
Query:  412 PNSIIGRAVVVHADPDDLGKGGHELNKSTGNAGGRVACGIIGL 540
            PNS++GRA+VVH   DDLGKGGHEL+ STGNAGGR+ACG++GL
Sbjct:  156 PNSVVGRALVVHELQDDLGKGGHELSLSTGNAGGRLACGVVGL 198          
BLAST of EY710281 vs. ExPASy Swiss-Prot
Match: SODC_DEIRA (Superoxide dismutase [Cu-Zn] OS=Deinococcus radiodurans GN=sodC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.623e-12
Identity = 49/153 (32.03%), Postives = 72/153 (47.06%), Query Frame = 1
Query:  109 VLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNG---------CMSTGPHFNP-AGKEHGAPE--DDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELNKSTGNAGGRVACGI 531
            +L  T  V GT +F+    G T VS  +SGLK GPHG H+H   +   G           + G HF+P A   H  P   +D  H                     N++ ++GP  ++GR++V+HAD DD     ++ N + GN+GGR  CG+
Sbjct:   32 LLDQTGKVTGTATFSPSPIG-TRVSIEVSGLKAGPHGLHIHENPNCNPGPDAQGQTIPFGAAGGHFDPGASHNHDGPHARNDQGHGGDLPMITVGEDGKGRLNFDTNRLKMTGPTGVLGRSIVIHADADD-----YQTNPA-GNSGGRERCGV 177          
The following BLAST results are available for this feature:
BLAST of EY710281 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODE_MOUSE6.671e-1635.46Extracellular superoxide dismutase [Cu-Zn] OS=Mus ... [more]
SODCP_POPTM9.017e-1374.42Superoxide dismutase [Cu-Zn], chloroplastic OS=Pop... [more]
SODC_DEIRA2.623e-1232.03Superoxide dismutase [Cu-Zn] OS=Deinococcus radiod... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-097-A09-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710281 ID=EY710281; Name=EY710281; organism=Citrus sinensis; type=EST; length=975bp
ACACTCTCTCTCTCTCTCACTCCCTCTTTCTCTCTACAAGCCCTCTTCAT
TTTCCTCCCTCCAAGGGGTGTTCTGAGATCACACAGCACAATGGTGAAAG
CAGTTGCAGTTCTTGGTGGAACTGAGGGTGTCAAGGGAACTGTTTCCTTT
GCCCAGGAAGGAGATGGTCCAACAACTGTATCAGGAAGCCTCTCTGGTCT
CAAGCCTGGTCCTCATGGATTCCATGTTCATGCTCTTGGAGACACAACAA
ATGGTTGCATGTCTACTGGACCCCACTTTAACCCTGCTGGAAAAGAACAT
GGAGCTCCAGAGGATGATAATCGTCATGCTGGTGATTTAGGAAATGTCAA
TGTTGGTGATGATGGTACTGCTACTTTTACAGTTGTTGACAATCAGATTC
CACTTTCTGGACCAAATTCCATTATTGGAAGGGCTGTTGTAGTCCACGCA
GATCCCGATGATCTTGGCAAGGGCGGTCATGAGCTGAACAAAAGCACTGG
AAATGCTGGTGGCAGAGTAGCTTGCGGCATCATTGGCCTCCAAGGGTGAA
GCCTTATCTCATCGGACAATAATAAATTCATTTGATATGGATGTTTTGAG
TGCATTATAGTCCATATATGCTTGAGTGTGACTTTTCAGAATATGATTCT
TGAAAAAAAAAAATCAATAACTTTGTTGGGGAACCTTGGAAGGTTTTTCT
TAAAATCCCCCTCCTTTAATTTTCATTTTTAATTAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGGGGGGGCCCCCTCTCAAGAGAATCCAAACCTTAAC
AACCCCGGGGGCAGGGCAAAGTTCCAAAACTTCTTTTTATAAGGGGCCCC
CCAAAAATTTTAATTTTACCGGGGGGCCCCCCCCTTTTTTAAACACCCCC
CCCGGGGAGAGGGGGGAAAAAAAACCCCCGGGGGGGGTTTTACCCCCCCA
CACTTTTTAATATCTCCCCCCCTTT
back to top