EY710281

Overview
NameEY710281
Unique NameEY710281
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length975
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710281 vs. ExPASy Swiss-Prot
Match: SODC_PEA (Superoxide dismutase [Cu-Zn] OS=Pisum sativum GN=SODCC PE=2 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 7.274e-63
Identity = 112/152 (73.68%), Postives = 128/152 (84.21%), Query Frame = 1
Query:   91 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELNKSTGNAGGRVACGIIGLQG 546
            MVKAVAVL  +  V GT++F+QEG+GPTTV+G+L+GLKPG HGFH+HALGDTTNGC+STGPHFNP GKEHGAPED+ RHA            T +FT+ DN IPL+G NSIIGRAVVVHADPDDLGKGGHEL+K+TGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVAVLSNSNEVSGTINFSQEGNGPTTVTGTLAGLKPGLHGFHIHALGDTTNGCISTGPHFNPNGKEHGAPEDETRHAGDLGNINVGDDGTVSFTITDNHIPLTGTNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152          
BLAST of EY710281 vs. ExPASy Swiss-Prot
Match: SODC_BRAOC (Superoxide dismutase [Cu-Zn] OS=Brassica oleracea var. capitata GN=SODCC PE=1 SV=2)

HSP 1 Score: 240.736 bits (613), Expect = 9.500e-63
Identity = 113/152 (74.34%), Postives = 125/152 (82.24%), Query Frame = 1
Query:   91 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELNKSTGNAGGRVACGIIGLQG 546
            M K VAVL  +EGVKGT+ F  EG+G TTV+G++SGL+PG HGFHVHALGD TNGCMSTGPHFNP GK HGAPED NRHA            TATFT+ D+QIPLSGPNSI+GRA+VVHADPDDLGKGGHEL+ STGNAGGRVACGIIGLQG
Sbjct:    1 MAKGVAVLNSSEGVKGTIFFTHEGNGATTVTGTVSGLRPGLHGFHVHALGDNTNGCMSTGPHFNPDGKTHGAPEDANRHAGDLGNIIVGDDGTATFTITDSQIPLSGPNSIVGRAIVVHADPDDLGKGGHELSLSTGNAGGRVACGIIGLQG 152          
BLAST of EY710281 vs. ExPASy Swiss-Prot
Match: SODC_SOLCS (Superoxide dismutase [Cu-Zn] OS=Solidago canadensis var. scabra GN=SODCC PE=2 SV=3)

HSP 1 Score: 240.35 bits (612), Expect = 1.241e-62
Identity = 115/153 (75.16%), Postives = 128/153 (83.66%), Query Frame = 1
Query:   91 MVKAVAVLGGTEGVKGTVSFAQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELNKSTGNAGGRVACGIIGLQG 546
            MVKAVAVL  +EGV GT+ F+QE +G PTTV+G LSGLKPGPHGFHVHALGDTTNGCMSTGPH+NP GK+HGAP+D++RHA            TA FT+VD QIPL G  SIIGRAVVVHADPDDLGKGGHEL+K+TGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVAVLSSSEGVSGTIFFSQEAEGAPTTVTGDLSGLKPGPHGFHVHALGDTTNGCMSTGPHYNPHGKDHGAPDDEHRHAGDLGNVTVGEDGTAKFTIVDKQIPLIGAQSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 153          
BLAST of EY710281 vs. ExPASy Swiss-Prot
Match: SODC1_BRAJU (Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea GN=SODCC1 PE=2 SV=3)

HSP 1 Score: 239.195 bits (609), Expect = 2.764e-62
Identity = 113/152 (74.34%), Postives = 125/152 (82.24%), Query Frame = 1
Query:   91 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELNKSTGNAGGRVACGIIGLQG 546
            M K V VL  +EGVKGT+ F QEG+G TTV+G++SGLKPG HGFHVHALGDTTNGCMSTGPHFNP GK HGAPED NRHA            TATFT+ D+QIPL GPNSI+GRAVVVHA+PDDLGKGGHEL+ +TGNAGGRVACGIIGLQG
Sbjct:    1 MGKGVRVLNSSEGVKGTIFFTQEGNGTTTVTGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPEGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDSQIPLDGPNSIVGRAVVVHAEPDDLGKGGHELSLTTGNAGGRVACGIIGLQG 152          
BLAST of EY710281 vs. ExPASy Swiss-Prot
Match: SODC2_BRAJU (Superoxide dismutase [Cu-Zn] 2 OS=Brassica juncea GN=SODCC2 PE=2 SV=3)

HSP 1 Score: 238.039 bits (606), Expect = 6.158e-62
Identity = 115/152 (75.66%), Postives = 126/152 (82.89%), Query Frame = 1
Query:   91 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELNKSTGNAGGRVACGIIGLQG 546
            M K VAVL  +EGVKGT+ FAQEG+G TTV+G++SGLKPG HGFHVHALGDTTNG MSTGPHFNP GK+HGAPED NRHA            TATFT+ D QIPLSGPNSI+GRAVVVHADPD LGKGGHEL+ +TGNAGGRVACGIIGLQG
Sbjct:    1 MGKGVAVLNSSEGVKGTIFFAQEGEGKTTVTGTVSGLKPGLHGFHVHALGDTTNGSMSTGPHFNPDGKQHGAPEDANRHAGDLGNIIVGDDGTATFTITDCQIPLSGPNSIVGRAVVVHADPDVLGKGGHELSLTTGNAGGRVACGIIGLQG 152          
BLAST of EY710281 vs. ExPASy Swiss-Prot
Match: SODC_PANGI (Superoxide dismutase [Cu-Zn] OS=Panax ginseng GN=SODCC PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 5.213e-61
Identity = 112/152 (73.68%), Postives = 121/152 (79.61%), Query Frame = 1
Query:   91 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELNKSTGNAGGRVACGIIGLQG 546
            MVKAV VL G+ GV G + F QE DGPTTV+G LSGL PG HGFHVHALGDTTNGC+STGPH+NPA KEHGAPED+ RHA            TA FT+VD QIPL G  SIIGRAVVVHADPDDLGKGGHEL+KSTGNAGGR+ACG IGLQG
Sbjct:    1 MVKAVTVLSGSGGVSGVIHFTQEEDGPTTVTGKLSGLAPGLHGFHVHALGDTTNGCLSTGPHYNPANKEHGAPEDETRHAGDLGNVTVGEDGTAEFTIVDKQIPLIGSGSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRLACGFIGLQG 152          
BLAST of EY710281 vs. ExPASy Swiss-Prot
Match: SODCP_SOLCS (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solidago canadensis var. scabra GN=SODCP PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 3.063e-53
Identity = 96/148 (64.86%), Postives = 113/148 (76.35%), Query Frame = 1
Query:   97 KAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELNKSTGNAGGRVACGIIGL 540
            KAVAVL GT  V+G V+  QE DGPTTV+  ++GL PGPHGFH+H  GDTTNGC+STGPHFNP G  HGAPED+NRHA             A  T+VDNQIPL+GPN+++GRA VVH   DDLGKGGHEL+ STGNAGGR+ACG++GL
Sbjct:   70 KAVAVLKGTSSVEGVVTLTQEEDGPTTVNVKITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNGNTHGAPEDENRHAGDLGNIIANADGVAEATIVDNQIPLTGPNAVVGRAFVVHELADDLGKGGHELSLSTGNAGGRLACGVVGL 217          
BLAST of EY710281 vs. ExPASy Swiss-Prot
Match: SODCP_SPIOL (Superoxide dismutase [Cu-Zn], chloroplastic OS=Spinacia oleracea GN=SODCP PE=1 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 4.423e-52
Identity = 96/148 (64.86%), Postives = 112/148 (75.68%), Query Frame = 1
Query:   97 KAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELNKSTGNAGGRVACGIIGL 540
            KAVAVL GT  V+G V+  QE DGPTTV+  +SGL PG HGFH+H  GDTTNGCMSTGPHFNP  K HGAPED+ RHA             A  T+VDNQIPL+GPNS++GRA+VVH   DDLGKGGHEL+ +TGNAGGR+ACG++GL
Sbjct:   72 KAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRISGLAPGKHGFHLHEFGDTTNGCMSTGPHFNPDKKTHGAPEDEVRHAGDLGNIVANTDGVAEATIVDNQIPLTGPNSVVGRALVVHELEDDLGKGGHELSPTTGNAGGRLACGVVGL 219          
BLAST of EY710281 vs. ExPASy Swiss-Prot
Match: SODCP_VITVI (Superoxide dismutase [Cu-Zn], chloroplastic OS=Vitis vinifera GN=SODCP PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 3.745e-51
Identity = 96/148 (64.86%), Postives = 111/148 (75.00%), Query Frame = 1
Query:   97 KAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELNKSTGNAGGRVACGIIGL 540
            KAVAVL GT  V+G V+ +QE DGPTTVS  ++GL PG HGFH+H  GDTTNGCMSTG HFNP G  HGAPEDD RHA             A  T+VD QIPLSGPN++IGRA+VVH   DDLGKGGHEL+ +TGNAGGR+ACG++GL
Sbjct:   62 KAVAVLKGTSSVEGVVTLSQEDDGPTTVSVRITGLTPGNHGFHLHEFGDTTNGCMSTGAHFNPNGMTHGAPEDDVRHAGDLGNIIANAEGVAEATIVDTQIPLSGPNAVIGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 209          
BLAST of EY710281 vs. ExPASy Swiss-Prot
Match: SODCP_ARATH (Superoxide dismutase [Cu-Zn], chloroplastic OS=Arabidopsis thaliana GN=SODCP PE=1 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 8.342e-51
Identity = 97/165 (58.79%), Postives = 114/165 (69.09%), Query Frame = 1
Query:   46 FIFLPPRGVLRSHSTMVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELNKSTGNAGGRVACGIIGL 540
            F    P   L   S   KAVAVL GT  V+G V+  Q+  GPTTV+  ++GL PGPHGFH+H  GDTTNGC+STGPHFNP    HGAPED+ RHA             A  T+VDNQIPL+GPNS++GRA VVH   DDLGKGGHEL+ +TGNAGGR+ACG+IGL
Sbjct:   49 FAVKAPSKALTVVSAAKKAVAVLKGTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELKDDLGKGGHELSLTTGNAGGRLACGVIGL 213          
The following BLAST results are available for this feature:
BLAST of EY710281 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODC_PEA7.274e-6373.68Superoxide dismutase [Cu-Zn] OS=Pisum sativum GN=S... [more]
SODC_BRAOC9.500e-6374.34Superoxide dismutase [Cu-Zn] OS=Brassica oleracea ... [more]
SODC_SOLCS1.241e-6275.16Superoxide dismutase [Cu-Zn] OS=Solidago canadensi... [more]
SODC1_BRAJU2.764e-6274.34Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea ... [more]
SODC2_BRAJU6.158e-6275.66Superoxide dismutase [Cu-Zn] 2 OS=Brassica juncea ... [more]
SODC_PANGI5.213e-6173.68Superoxide dismutase [Cu-Zn] OS=Panax ginseng GN=S... [more]
SODCP_SOLCS3.063e-5364.86Superoxide dismutase [Cu-Zn], chloroplastic OS=Sol... [more]
SODCP_SPIOL4.423e-5264.86Superoxide dismutase [Cu-Zn], chloroplastic OS=Spi... [more]
SODCP_VITVI3.745e-5164.86Superoxide dismutase [Cu-Zn], chloroplastic OS=Vit... [more]
SODCP_ARATH8.342e-5158.79Superoxide dismutase [Cu-Zn], chloroplastic OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-097-A09-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710281 ID=EY710281; Name=EY710281; organism=Citrus sinensis; type=EST; length=975bp
ACACTCTCTCTCTCTCTCACTCCCTCTTTCTCTCTACAAGCCCTCTTCAT
TTTCCTCCCTCCAAGGGGTGTTCTGAGATCACACAGCACAATGGTGAAAG
CAGTTGCAGTTCTTGGTGGAACTGAGGGTGTCAAGGGAACTGTTTCCTTT
GCCCAGGAAGGAGATGGTCCAACAACTGTATCAGGAAGCCTCTCTGGTCT
CAAGCCTGGTCCTCATGGATTCCATGTTCATGCTCTTGGAGACACAACAA
ATGGTTGCATGTCTACTGGACCCCACTTTAACCCTGCTGGAAAAGAACAT
GGAGCTCCAGAGGATGATAATCGTCATGCTGGTGATTTAGGAAATGTCAA
TGTTGGTGATGATGGTACTGCTACTTTTACAGTTGTTGACAATCAGATTC
CACTTTCTGGACCAAATTCCATTATTGGAAGGGCTGTTGTAGTCCACGCA
GATCCCGATGATCTTGGCAAGGGCGGTCATGAGCTGAACAAAAGCACTGG
AAATGCTGGTGGCAGAGTAGCTTGCGGCATCATTGGCCTCCAAGGGTGAA
GCCTTATCTCATCGGACAATAATAAATTCATTTGATATGGATGTTTTGAG
TGCATTATAGTCCATATATGCTTGAGTGTGACTTTTCAGAATATGATTCT
TGAAAAAAAAAAATCAATAACTTTGTTGGGGAACCTTGGAAGGTTTTTCT
TAAAATCCCCCTCCTTTAATTTTCATTTTTAATTAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGGGGGGGCCCCCTCTCAAGAGAATCCAAACCTTAAC
AACCCCGGGGGCAGGGCAAAGTTCCAAAACTTCTTTTTATAAGGGGCCCC
CCAAAAATTTTAATTTTACCGGGGGGCCCCCCCCTTTTTTAAACACCCCC
CCCGGGGAGAGGGGGGAAAAAAAACCCCCGGGGGGGGTTTTACCCCCCCA
CACTTTTTAATATCTCCCCCCCTTT
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