EY710281

Overview
NameEY710281
Unique NameEY710281
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length975
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710281 vs. ExPASy Swiss-Prot
Match: SODC_CRYGA (Superoxide dismutase [Cu-Zn] OS=Cryptococcus gattii GN=SOD1 PE=2 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 2.356e-37
Identity = 79/152 (51.97%), Postives = 91/152 (59.87%), Query Frame = 1
Query:   91 MVKAVAVLGGTEGVKGTVSFAQEGDG-PTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELNKSTGNAGGRVACGIIGL 540
            MVKAVAVL G   V G ++F QE +G P TVSG +  L      GFHVH  GD TNGC S GPHFNP GK HGAP D  RH              A+  + D  + L GP SIIGR +VVHA  DD GKGG+  +  TGNAG R ACG+IG+
Sbjct:    1 MVKAVAVLKGDSPVTGVITFTQEKEGAPVTVSGDIKNLDANAERGFHVHEFGDNTNGCTSAGPHFNPHGKNHGAPSDSERHVGDLGNVKTDGNGVASVNISDKSLSLFGPYSIIGRTIVVHAGTDDFGKGGNAESLKTGNAGARAACGVIGI 152          
BLAST of EY710281 vs. ExPASy Swiss-Prot
Match: SODC_HYLLA (Superoxide dismutase [Cu-Zn] OS=Hylobates lar GN=SOD1 PE=2 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 3.077e-37
Identity = 75/150 (50.00%), Postives = 96/150 (64.00%), Query Frame = 1
Query:   94 VKAVAVLGGTEGVKGTVSFAQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELNKSTGNAGGRVACGIIGL 540
            +KAV VL G   V+G ++F Q E +GP  V G ++GL  G HGFHVH  GD T GC S GPHFNP  ++HG P+D+ RH              A  ++ D+ I LSG +SIIGR +VVH   DDLGKGG+E +  TGNAG R+ACG+IG+
Sbjct:    3 MKAVCVLKGDSPVQGIINFEQKESNGPVKVYGRITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVAKVSIEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of EY710281 vs. ExPASy Swiss-Prot
Match: SODC_RAT (Superoxide dismutase [Cu-Zn] OS=Rattus norvegicus GN=Sod1 PE=1 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 5.249e-37
Identity = 75/150 (50.00%), Postives = 93/150 (62.00%), Query Frame = 1
Query:   94 VKAVAVLGGTEGVKGTVSFAQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELNKSTGNAGGRVACGIIGL 540
            +KAV VL G   V+G + F Q+  G P  VSG ++GL  G HGFHVH  GD T GC + GPHFNP  K+HG P D+ RH              A  ++ D  I LSG +SIIGR +VVH   DDLGKGG+E +  TGNAG R+ACG+IG+
Sbjct:    3 MKAVCVLKGDGPVQGVIHFEQKASGEPVVVSGQITGLTEGEHGFHVHQYGDNTQGCTTAGPHFNPHSKKHGGPADEERHVGDLGNVAAGKDGVANVSIEDRVISLSGEHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of EY710281 vs. ExPASy Swiss-Prot
Match: SODC_ASPFU (Superoxide dismutase [Cu-Zn] OS=Aspergillus fumigatus GN=sodC PE=2 SV=3)

HSP 1 Score: 155.221 bits (391), Expect = 5.249e-37
Identity = 80/152 (52.63%), Postives = 95/152 (62.50%), Query Frame = 1
Query:   91 MVKAVAVLGGTEGVKGTVSFAQ-EGDGPTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELNKSTGNAGGRVACGIIGL 540
            MVKAVAVL G   + GTV+F Q + + PTTVS ++ G  P    GFHVH  GD TNGC S GPHFNP GK HGAPED  RH              A  +  D  I L G  S++GR +VVHA  DDLG+GG+E +K TGNAG R ACG+IG+
Sbjct:    1 MVKAVAVLRGDSKITGTVTFEQADENSPTTVSWNIKGNDPNAKRGFHVHQFGDNTNGCTSAGPHFNPYGKTHGAPEDSERHVGDLGNFETDAEGNAVGSKQDKLIKLIGAESVLGRTLVVHAGTDDLGRGGNEESKKTGNAGARPACGVIGI 152          
BLAST of EY710281 vs. ExPASy Swiss-Prot
Match: SODC_ONCVO (Superoxide dismutase [Cu-Zn] OS=Onchocerca volvulus GN=sod-1 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 6.856e-37
Identity = 81/151 (53.64%), Postives = 100/151 (66.23%), Query Frame = 1
Query:  100 AVAVLGGTEGVKGTVSFAQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKG-GHELNKS--TGNAGGRVACGIIGL 540
            A+AVL G + V G + F Q+ +G PTTV+G + GL PG HGFH+H  GDTTNGC+S GPHFNP  K HG   D+ RH             TA  ++ D  I L GPNSIIGR++VVHAD DDLGKG G + ++S  TGNAG RVACGI+ +
Sbjct:    5 AIAVLRG-DTVSGIIRFKQDKEGLPTTVTGEVKGLTPGLHGFHIHQYGDTTNGCISAGPHFNPYNKTHGDRTDEIRHVGDLGNIEAGADGTAHISISDQHIQLLGPNSIIGRSIVVHADQDDLGKGVGAKKDESLKTGNAGARVACGIVAI 154          
BLAST of EY710281 vs. ExPASy Swiss-Prot
Match: SODC_CAPHI (Superoxide dismutase [Cu-Zn] OS=Capra hircus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 6.856e-37
Identity = 76/148 (51.35%), Postives = 93/148 (62.84%), Query Frame = 1
Query:   97 KAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELNKSTGNAGGRVACGIIGL 540
            KAV VL G   V+GT+ F  +GD    V+GS++GL  G HGFHVH  GD T GC S GPHFNP  K+HG P+D+ RH              A   +VD  I LSG  SIIGR +VVH  PDDLG+GG+E +  TGNAG  +ACG+IG+
Sbjct:    4 KAVCVLKGDGPVQGTIHFEAKGD-KVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVKADKNGVAIVDIVDPLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSCLACGVIGI 150          
BLAST of EY710281 vs. ExPASy Swiss-Prot
Match: SODC_CEREL (Superoxide dismutase [Cu-Zn] OS=Cervus elaphus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 8.954e-37
Identity = 75/148 (50.68%), Postives = 94/148 (63.51%), Query Frame = 1
Query:   97 KAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELNKSTGNAGGRVACGIIGL 540
            KAV VL G   V+GT+ F  +G     V+GS++GL  G HGFHVH  GD T GC S GPHFNP  K+HG P+D+ RH              A   +VD+ I LSG +SIIGR +VVH  PDDLG+GG+E +  TGNA  R+ACG+IG+
Sbjct:    4 KAVCVLKGDGPVQGTIRFEAKGH-TVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAKVDIVDSLISLSGEHSIIGRTMVVHEKPDDLGRGGNEESTKTGNARNRLACGVIGI 150          
BLAST of EY710281 vs. ExPASy Swiss-Prot
Match: SODC1_DICDI (Superoxide dismutase [Cu-Zn] 1 OS=Dictyostelium discoideum GN=sodA PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 8.954e-37
Identity = 77/148 (52.03%), Postives = 95/148 (64.19%), Query Frame = 1
Query:  100 AVAVLGGTEGVKGTVSFAQEG-DGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELNKSTGNAGGRVACGIIGL 540
            AV V+ G E V G V F QE  D P TV+  ++GL+ G HGFHVHA GDTTNGC+S GPHFNP GK HGAP D++RH                 T+ D  I L G ++I+GR +VVHAD DDLGKGG   + +TG AG R+ CG+IG+
Sbjct:    5 AVCVIKG-EKVNGVVKFTQENKDSPVTVNYDITGLEKGEHGFHVHAFGDTTNGCVSAGPHFNPFGKNHGAPSDEDRHVGDLGNIVADGESNTKGTISDKIISLFGEHTIVGRTMVVHADQDDLGKGGKPDSLTTGAAGARLGCGVIGV 151          
BLAST of EY710281 vs. ExPASy Swiss-Prot
Match: SODC1_DEBHA (Superoxide dismutase [Cu-Zn] 1 OS=Debaryomyces hansenii GN=SOD1 PE=1 SV=4)

HSP 1 Score: 154.451 bits (389), Expect = 8.954e-37
Identity = 81/152 (53.29%), Postives = 93/152 (61.18%), Query Frame = 1
Query:   91 MVKAVAVLGGTEGVKGTVSFAQEGDG-PTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELNKSTGNAGGRVACGIIGL 540
            M KAVAVL G   V G V+F Q  +  PTT++  +SG       GFHVH  GD TNGC S GPHFNP  KEHGAPEDDNRH              A  +  D  + L G NSI+GR VV+HA  DDLGKGG+  +K TGNAG R ACG+IGL
Sbjct:    1 MAKAVAVLRGDSKVSGVVNFEQSSESDPTTITWEISGNDANALRGFHVHTFGDNTNGCTSAGPHFNPFTKEHGAPEDDNRHVGDLGNVTTDTSGVAKGSKQDLFVKLIGQNSILGRTVVIHAGTDDLGKGGNAESKKTGNAGARPACGVIGL 152          
BLAST of EY710281 vs. ExPASy Swiss-Prot
Match: SODC_CORMI (Superoxide dismutase [Cu-Zn] OS=Cordyceps militaris GN=SOD1 PE=2 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 1.169e-36
Identity = 78/152 (51.32%), Postives = 95/152 (62.50%), Query Frame = 1
Query:   91 MVKAVAVLGGTEGVKGTVSFAQEGDG-PTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELNKSTGNAGGRVACGIIGL 540
            MVKAV VL G   V GTV+F QE +  PTT++  ++G  P    GFH+H  GD TNGC S GPHFNP GK HGAP D  RH              A  +V D+ + L GP+S++GR VVVH   DDLGKGG+E +  TGNAG R ACG+IG+
Sbjct:    1 MVKAVCVLRGDAKVAGTVTFEQESESAPTTITWDITGNDPNAERGFHIHTFGDNTNGCTSAGPHFNPHGKTHGAPTDAARHVGDLGNIKTDGQGNAKGSVQDSHVKLIGPHSVVGRTVVVHGGTDDLGKGGNEESLKTGNAGPRPACGVIGV 152          
The following BLAST results are available for this feature:
BLAST of EY710281 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODC_CRYGA2.356e-3751.97Superoxide dismutase [Cu-Zn] OS=Cryptococcus gatti... [more]
SODC_HYLLA3.077e-3750.00Superoxide dismutase [Cu-Zn] OS=Hylobates lar GN=S... [more]
SODC_RAT5.249e-3750.00Superoxide dismutase [Cu-Zn] OS=Rattus norvegicus ... [more]
SODC_ASPFU5.249e-3752.63Superoxide dismutase [Cu-Zn] OS=Aspergillus fumiga... [more]
SODC_ONCVO6.856e-3753.64Superoxide dismutase [Cu-Zn] OS=Onchocerca volvulu... [more]
SODC_CAPHI6.856e-3751.35Superoxide dismutase [Cu-Zn] OS=Capra hircus GN=SO... [more]
SODC_CEREL8.954e-3750.68Superoxide dismutase [Cu-Zn] OS=Cervus elaphus GN=... [more]
SODC1_DICDI8.954e-3752.03Superoxide dismutase [Cu-Zn] 1 OS=Dictyostelium di... [more]
SODC1_DEBHA8.954e-3753.29Superoxide dismutase [Cu-Zn] 1 OS=Debaryomyces han... [more]
SODC_CORMI1.169e-3651.32Superoxide dismutase [Cu-Zn] OS=Cordyceps militari... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-097-A09-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710281 ID=EY710281; Name=EY710281; organism=Citrus sinensis; type=EST; length=975bp
ACACTCTCTCTCTCTCTCACTCCCTCTTTCTCTCTACAAGCCCTCTTCAT
TTTCCTCCCTCCAAGGGGTGTTCTGAGATCACACAGCACAATGGTGAAAG
CAGTTGCAGTTCTTGGTGGAACTGAGGGTGTCAAGGGAACTGTTTCCTTT
GCCCAGGAAGGAGATGGTCCAACAACTGTATCAGGAAGCCTCTCTGGTCT
CAAGCCTGGTCCTCATGGATTCCATGTTCATGCTCTTGGAGACACAACAA
ATGGTTGCATGTCTACTGGACCCCACTTTAACCCTGCTGGAAAAGAACAT
GGAGCTCCAGAGGATGATAATCGTCATGCTGGTGATTTAGGAAATGTCAA
TGTTGGTGATGATGGTACTGCTACTTTTACAGTTGTTGACAATCAGATTC
CACTTTCTGGACCAAATTCCATTATTGGAAGGGCTGTTGTAGTCCACGCA
GATCCCGATGATCTTGGCAAGGGCGGTCATGAGCTGAACAAAAGCACTGG
AAATGCTGGTGGCAGAGTAGCTTGCGGCATCATTGGCCTCCAAGGGTGAA
GCCTTATCTCATCGGACAATAATAAATTCATTTGATATGGATGTTTTGAG
TGCATTATAGTCCATATATGCTTGAGTGTGACTTTTCAGAATATGATTCT
TGAAAAAAAAAAATCAATAACTTTGTTGGGGAACCTTGGAAGGTTTTTCT
TAAAATCCCCCTCCTTTAATTTTCATTTTTAATTAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGGGGGGGCCCCCTCTCAAGAGAATCCAAACCTTAAC
AACCCCGGGGGCAGGGCAAAGTTCCAAAACTTCTTTTTATAAGGGGCCCC
CCAAAAATTTTAATTTTACCGGGGGGCCCCCCCCTTTTTTAAACACCCCC
CCCGGGGAGAGGGGGGAAAAAAAACCCCCGGGGGGGGTTTTACCCCCCCA
CACTTTTTAATATCTCCCCCCCTTT
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