EY684906
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY684906 vs. ExPASy Swiss-Prot
Match: U2AF2_DROME (Splicing factor U2AF 50 kDa subunit OS=Drosophila melanogaster GN=U2af50 PE=1 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 4.104e-35 Identity = 87/219 (39.73%), Postives = 129/219 (58.90%), Query Frame = 3 Query: 24 EQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPG-QPSPNLNLAAVGLASGAIGGA--EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA---HSGQSKTEQESILAQAQQHITIQKNGP 662 E+ + FF+Q M +G A G V+ IN +K FAF+E R+++E + AMA DGI +G ++++RRP DY P PG +P + A V +SG I + P ++F+GGLP Y + Q+KELL SFG L F+LVKD TG SKGY FC Y D ++TD + A LNG+++GDK L V+RA+ ++ + +S++ Q + +GP Sbjct: 106 EEEMMEFFNQQMHLVGLAQAA-GSPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINLKGQSLKIRRPHDYQPM------PGITDTPAIKPAVV--SSGVISTVVPDSPHKIFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEYVDLSITDQSIAGLNGMQLGDKKLIVQRASVGAKNAQNAANTTQSVMLQVPGLSNVVTSGP 315
BLAST of EY684906 vs. ExPASy Swiss-Prot
Match: U2AF2_CAEEL (Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis elegans GN=uaf-1 PE=1 SV=2) HSP 1 Score: 138.658 bits (348), Expect = 4.247e-32 Identity = 82/194 (42.27%), Postives = 118/194 (60.82%), Query Frame = 3 Query: 21 NEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAHSGQSKT 602 NE+A+ FF+Q M G A PG+ ++ IN +K FAF+E R+++E + MA DGI F G ++VRRP DY P+ Q + ++N + + +++ + A +++F+GGLP Y TE Q+KELL SFG L F L D GNSKGY F Y DP +TD A A LNG+++GDK L V+ A A+ + T Sbjct: 196 NEEAMLDFFNQQMHLCGLAQA-PGNPILLCQINLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLKVRRPRDYQPS--------QNTFDMN-SRMPVSTIVVDSA---NKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVD-SQGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLACANQQRHNT 375
BLAST of EY684906 vs. ExPASy Swiss-Prot
Match: U2AF2_CAEBR (Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis briggsae GN=uaf-1 PE=3 SV=2) HSP 1 Score: 138.658 bits (348), Expect = 4.247e-32 Identity = 83/194 (42.78%), Postives = 117/194 (60.31%), Query Frame = 3 Query: 21 NEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAHSGQSKT 602 NE+A+ FF+Q M A PG+ ++ IN +K FAF+E R+++E + MA DGI F G ++VRRP DY P+ Q + ++N A + ++S + A +++F+GGLP Y TE Q+KELL SFG L F L D GNSKGY F Y DP +TD A A LNG+++GDK L V+ A A+ + T Sbjct: 187 NEEAMLDFFNQQMHLCNLAQA-PGNPILLCQINLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLKVRRPRDYQPS--------QNTFDMN-ARMPVSSIVVDSA---NKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVD-SQGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLACANQTRHNT 366
BLAST of EY684906 vs. ExPASy Swiss-Prot
Match: CSTFT_MOUSE (Cleavage stimulation factor 64 kDa subunit, tau variant OS=Mus musculus GN=Cstf2t PE=1 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 1.420e-11 Identity = 38/89 (42.70%), Postives = 51/89 (57.30%), Query Frame = 3 Query: 351 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAHSGQSKTEQESI 617 VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A LNG + + L V A S ++K E +S+ Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA--SEKNKEELKSL 104
BLAST of EY684906 vs. ExPASy Swiss-Prot
Match: CSTFT_HUMAN (Cleavage stimulation factor 64 kDa subunit, tau variant OS=Homo sapiens GN=CSTF2T PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.420e-11 Identity = 38/89 (42.70%), Postives = 51/89 (57.30%), Query Frame = 3 Query: 351 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAHSGQSKTEQESI 617 VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A LNG + + L V A S ++K E +S+ Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA--SEKNKEELKSL 104
BLAST of EY684906 vs. ExPASy Swiss-Prot
Match: RBM23_HUMAN (Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.423e-11 Identity = 57/200 (28.50%), Postives = 84/200 (42.00%), Query Frame = 3 Query: 126 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAH--SGQSKT----EQESILAQAQQHITIQKNGPYKLVA*ILSGGGMSL 707 K A+VE ++ A+ L G GV + V+ LAA +A+ G GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF + D A LNG ++ + + V T G T +QE L A G ++L+A + G G+ L Sbjct: 207 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA-----------------MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGTDITFPDGDQELDLGSA--------GGRFQLMAKLAEGAGIQL 381
BLAST of EY684906 vs. ExPASy Swiss-Prot
Match: CSTF2_PONAB (Cleavage stimulation factor 64 kDa subunit OS=Pongo abelii GN=CSTF2 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.423e-11 Identity = 38/89 (42.70%), Postives = 50/89 (56.18%), Query Frame = 3 Query: 351 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAHSGQSKTEQESI 617 VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A LNG + + L V A S ++K E +S+ Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA--SEKNKEELKSL 104
BLAST of EY684906 vs. ExPASy Swiss-Prot
Match: CSTF2_MOUSE (Cleavage stimulation factor 64 kDa subunit OS=Mus musculus GN=Cstf2 PE=1 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 2.423e-11 Identity = 38/89 (42.70%), Postives = 50/89 (56.18%), Query Frame = 3 Query: 351 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAHSGQSKTEQESI 617 VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A LNG + + L V A S ++K E +S+ Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA--SEKNKEELKSL 104
BLAST of EY684906 vs. ExPASy Swiss-Prot
Match: CSTF2_HUMAN (Cleavage stimulation factor 64 kDa subunit OS=Homo sapiens GN=CSTF2 PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.423e-11 Identity = 38/89 (42.70%), Postives = 50/89 (56.18%), Query Frame = 3 Query: 351 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAHSGQSKTEQESI 617 VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A LNG + + L V A S ++K E +S+ Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA--SEKNKEELKSL 104
BLAST of EY684906 vs. ExPASy Swiss-Prot
Match: CSTF2_BOVIN (Cleavage stimulation factor 64 kDa subunit OS=Bos taurus GN=CSTF2 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.423e-11 Identity = 38/89 (42.70%), Postives = 50/89 (56.18%), Query Frame = 3 Query: 351 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAHSGQSKTEQESI 617 VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A LNG + + L V A S ++K E +S+ Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA--SEKNKEELKSL 104 The following BLAST results are available for this feature:
BLAST of EY684906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 23
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Sequences
The
following sequences are available for this feature:
EST sequence >EY684906 ID=EY684906; Name=EY684906; organism=Citrus sinensis; type=EST; length=871bpback to top |