EY684906

Overview
NameEY684906
Unique NameEY684906
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684906 vs. ExPASy Swiss-Prot
Match: U2AF2_DROME (Splicing factor U2AF 50 kDa subunit OS=Drosophila melanogaster GN=U2af50 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.104e-35
Identity = 87/219 (39.73%), Postives = 129/219 (58.90%), Query Frame = 3
Query:   24 EQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPG-QPSPNLNLAAVGLASGAIGGA--EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA---HSGQSKTEQESILAQAQQHITIQKNGP 662
            E+ +  FF+Q M  +G   A  G  V+   IN +K FAF+E R+++E + AMA DGI  +G ++++RRP DY P       PG   +P +  A V  +SG I     + P ++F+GGLP Y  + Q+KELL SFG L  F+LVKD  TG SKGY FC Y D ++TD + A LNG+++GDK L V+RA+    ++  +    +S++ Q      +  +GP
Sbjct:  106 EEEMMEFFNQQMHLVGLAQAA-GSPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINLKGQSLKIRRPHDYQPM------PGITDTPAIKPAVV--SSGVISTVVPDSPHKIFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEYVDLSITDQSIAGLNGMQLGDKKLIVQRASVGAKNAQNAANTTQSVMLQVPGLSNVVTSGP 315          
BLAST of EY684906 vs. ExPASy Swiss-Prot
Match: U2AF2_CAEEL (Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis elegans GN=uaf-1 PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 4.247e-32
Identity = 82/194 (42.27%), Postives = 118/194 (60.82%), Query Frame = 3
Query:   21 NEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAHSGQSKT 602
            NE+A+  FF+Q M   G   A PG+ ++   IN +K FAF+E R+++E +  MA DGI F G  ++VRRP DY P+        Q + ++N + + +++  +  A   +++F+GGLP Y TE Q+KELL SFG L  F L  D   GNSKGY F  Y DP +TD A A LNG+++GDK L V+ A A+  +  T
Sbjct:  196 NEEAMLDFFNQQMHLCGLAQA-PGNPILLCQINLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLKVRRPRDYQPS--------QNTFDMN-SRMPVSTIVVDSA---NKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVD-SQGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLACANQQRHNT 375          
BLAST of EY684906 vs. ExPASy Swiss-Prot
Match: U2AF2_CAEBR (Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis briggsae GN=uaf-1 PE=3 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 4.247e-32
Identity = 83/194 (42.78%), Postives = 117/194 (60.31%), Query Frame = 3
Query:   21 NEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAHSGQSKT 602
            NE+A+  FF+Q M       A PG+ ++   IN +K FAF+E R+++E +  MA DGI F G  ++VRRP DY P+        Q + ++N A + ++S  +  A   +++F+GGLP Y TE Q+KELL SFG L  F L  D   GNSKGY F  Y DP +TD A A LNG+++GDK L V+ A A+  +  T
Sbjct:  187 NEEAMLDFFNQQMHLCNLAQA-PGNPILLCQINLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLKVRRPRDYQPS--------QNTFDMN-ARMPVSSIVVDSA---NKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVD-SQGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLACANQTRHNT 366          
BLAST of EY684906 vs. ExPASy Swiss-Prot
Match: CSTFT_MOUSE (Cleavage stimulation factor 64 kDa subunit, tau variant OS=Mus musculus GN=Cstf2t PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.420e-11
Identity = 38/89 (42.70%), Postives = 51/89 (57.30%), Query Frame = 3
Query:  351 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAHSGQSKTEQESI 617
            VFVG +PY  TE Q+K++    G++  F LV DR+TG  KGYGFC YQD      A   LNG +   + L V  A   S ++K E +S+
Sbjct:   18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA--SEKNKEELKSL 104          
BLAST of EY684906 vs. ExPASy Swiss-Prot
Match: CSTFT_HUMAN (Cleavage stimulation factor 64 kDa subunit, tau variant OS=Homo sapiens GN=CSTF2T PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.420e-11
Identity = 38/89 (42.70%), Postives = 51/89 (57.30%), Query Frame = 3
Query:  351 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAHSGQSKTEQESI 617
            VFVG +PY  TE Q+K++    G++  F LV DR+TG  KGYGFC YQD      A   LNG +   + L V  A   S ++K E +S+
Sbjct:   18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA--SEKNKEELKSL 104          
BLAST of EY684906 vs. ExPASy Swiss-Prot
Match: RBM23_HUMAN (Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.423e-11
Identity = 57/200 (28.50%), Postives = 84/200 (42.00%), Query Frame = 3
Query:  126 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAH--SGQSKT----EQESILAQAQQHITIQKNGPYKLVA*ILSGGGMSL 707
            K  A+VE   ++    A+ L G    GV + V+        LAA                 +A+    G  GP R++VG L +  TE  ++ + E FG +    L+KD DTG SKGYGF  + D      A   LNG ++  + + V   T     G   T    +QE  L  A         G ++L+A +  G G+ L
Sbjct:  207 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA-----------------MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGTDITFPDGDQELDLGSA--------GGRFQLMAKLAEGAGIQL 381          
BLAST of EY684906 vs. ExPASy Swiss-Prot
Match: CSTF2_PONAB (Cleavage stimulation factor 64 kDa subunit OS=Pongo abelii GN=CSTF2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.423e-11
Identity = 38/89 (42.70%), Postives = 50/89 (56.18%), Query Frame = 3
Query:  351 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAHSGQSKTEQESI 617
            VFVG +PY  TE Q+K++    G +  F LV DR+TG  KGYGFC YQD      A   LNG +   + L V  A   S ++K E +S+
Sbjct:   18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA--SEKNKEELKSL 104          
BLAST of EY684906 vs. ExPASy Swiss-Prot
Match: CSTF2_MOUSE (Cleavage stimulation factor 64 kDa subunit OS=Mus musculus GN=Cstf2 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.423e-11
Identity = 38/89 (42.70%), Postives = 50/89 (56.18%), Query Frame = 3
Query:  351 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAHSGQSKTEQESI 617
            VFVG +PY  TE Q+K++    G +  F LV DR+TG  KGYGFC YQD      A   LNG +   + L V  A   S ++K E +S+
Sbjct:   18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA--SEKNKEELKSL 104          
BLAST of EY684906 vs. ExPASy Swiss-Prot
Match: CSTF2_HUMAN (Cleavage stimulation factor 64 kDa subunit OS=Homo sapiens GN=CSTF2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.423e-11
Identity = 38/89 (42.70%), Postives = 50/89 (56.18%), Query Frame = 3
Query:  351 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAHSGQSKTEQESI 617
            VFVG +PY  TE Q+K++    G +  F LV DR+TG  KGYGFC YQD      A   LNG +   + L V  A   S ++K E +S+
Sbjct:   18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA--SEKNKEELKSL 104          
BLAST of EY684906 vs. ExPASy Swiss-Prot
Match: CSTF2_BOVIN (Cleavage stimulation factor 64 kDa subunit OS=Bos taurus GN=CSTF2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.423e-11
Identity = 38/89 (42.70%), Postives = 50/89 (56.18%), Query Frame = 3
Query:  351 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAHSGQSKTEQESI 617
            VFVG +PY  TE Q+K++    G +  F LV DR+TG  KGYGFC YQD      A   LNG +   + L V  A   S ++K E +S+
Sbjct:   18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA--SEKNKEELKSL 104          
The following BLAST results are available for this feature:
BLAST of EY684906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
U2AF2_DROME4.104e-3539.73Splicing factor U2AF 50 kDa subunit OS=Drosophila ... [more]
U2AF2_CAEEL4.247e-3242.27Splicing factor U2AF 65 kDa subunit OS=Caenorhabdi... [more]
U2AF2_CAEBR4.247e-3242.78Splicing factor U2AF 65 kDa subunit OS=Caenorhabdi... [more]
CSTFT_MOUSE1.420e-1142.70Cleavage stimulation factor 64 kDa subunit, tau va... [more]
CSTFT_HUMAN1.420e-1142.70Cleavage stimulation factor 64 kDa subunit, tau va... [more]
RBM23_HUMAN2.423e-1128.50Probable RNA-binding protein 23 OS=Homo sapiens GN... [more]
CSTF2_PONAB2.423e-1142.70Cleavage stimulation factor 64 kDa subunit OS=Pong... [more]
CSTF2_MOUSE2.423e-1142.70Cleavage stimulation factor 64 kDa subunit OS=Mus ... [more]
CSTF2_HUMAN2.423e-1142.70Cleavage stimulation factor 64 kDa subunit OS=Homo... [more]
CSTF2_BOVIN2.423e-1142.70Cleavage stimulation factor 64 kDa subunit OS=Bos ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-005-B07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684906 ID=EY684906; Name=EY684906; organism=Citrus sinensis; type=EST; length=871bp
CCACGCGTCCGCCTTTGGCTAATGAACAGGCAATTGCTACATTCTTTAGC
CAAGTTATGACTGCTATTGGAGGAAATTCTGCTGGTCCTGGTGATGCAGT
AGTGAATGTTTACATCAATCATGAGAAGAAATTTGCATTTGTGGAGATGA
GAACTGTTGAAGAAGCGAGTAATGCAATGGCATTAGATGGGATTATATTT
GAGGGGGTTGCTGTGAGGGTAAGAAGACCTACGGATTACAACCCTACATT
AGCTGCAGCACTTGGTCCAGGCCAACCAAGTCCGAATCTTAACTTGGCAG
CTGTTGGACTTGCATCAGGTGCAATTGGTGGAGCAGAGGGACCTGATCGG
GTCTTTGTGGGTGGATTACCATACTACTTCACTGAAACTCAGATAAAAGA
GTTGCTCGAGTCTTTTGGGACTCTTCATGGTTTTGACCTCGTTAAGGATA
GAGACACGGGGAACTCTAAAGGATATGGTTTCTGTGTCTATCAGGATCCA
GCGGTGACAGACATAGCATGTGCAGCTCTAAATGGCTTGAAAATGGGTGA
TAAAACTTTAACTGTTCGGCGAGCTACTGCCCACAGTGGGCAATCTAAAA
CTGAACAAGAAAGCATATTAGCCCAGGCTCAACAGCATATAACTATCCAG
AAAAATGGCCCTTACAAACTAGTGGCATGAATACTCTCCGGAGGAGGAAT
GTCTTTATTTTGGAAAAACTCTAGCTAAAAGTTTATTGCTTTGATTGAGG
CAATTACCTGCCTGATGCCCTTGCCGAATGAAGAAGAAAAATTGCAGGAA
ATTTTTAAAAAGAATTTGAAGGGAAAGAATTCGGGTGAAAGATGGAAAGC
CTTGGGGAGATTGTTGTGTGT
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