EY684906

Overview
NameEY684906
Unique NameEY684906
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684906 vs. ExPASy Swiss-Prot
Match: RBM39_PONAB (RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.164e-11
Identity = 53/198 (26.77%), Postives = 83/198 (41.92%), Query Frame = 3
Query:  126 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV----RRATAHSGQSKTEQESILAQAQQHITIQKNGPYKLVA*ILSGGGMSL 707
            K  A+VE   V     A+ L G    GV + V                 Q S      A  +A+    G+ GP R++VG L +  TE  ++ + E FG +    L+ D +TG SKGYGF  + D      A   LNG ++  + + V     R  A S  S  + + +    +  I +   G  +L+A +  G G+ +
Sbjct:  194 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDEL---ERTGIDLGTTGRLQLMARLAEGTGLQI 371          
BLAST of EY684906 vs. ExPASy Swiss-Prot
Match: RBM39_HUMAN (RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.164e-11
Identity = 53/198 (26.77%), Postives = 83/198 (41.92%), Query Frame = 3
Query:  126 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV----RRATAHSGQSKTEQESILAQAQQHITIQKNGPYKLVA*ILSGGGMSL 707
            K  A+VE   V     A+ L G    GV + V                 Q S      A  +A+    G+ GP R++VG L +  TE  ++ + E FG +    L+ D +TG SKGYGF  + D      A   LNG ++  + + V     R  A S  S  + + +    +  I +   G  +L+A +  G G+ +
Sbjct:  194 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDEL---ERTGIDLGTTGRLQLMARLAEGTGLQI 371          
BLAST of EY684906 vs. ExPASy Swiss-Prot
Match: RBM39_MOUSE (RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.397e-11
Identity = 40/140 (28.57%), Postives = 67/140 (47.86%), Query Frame = 3
Query:  300 AVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV----RRATAHSGQSKTEQESILAQAQQHITIQKNGPYKLVA*ILSGGGMSL 707
            A  +A+    G+ GP R++VG L +  TE  ++ + E FG +    L+ D +TG SKGYGF  + D      A   LNG ++  + + V     R  A S  S  + + +    +  I +   G  +L+A +  G G+ +
Sbjct:  235 AAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDEL---ERTGIDLGTTGRLQLMARLAEGTGLQI 371          
The following BLAST results are available for this feature:
BLAST of EY684906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RBM39_PONAB3.164e-1126.77RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE... [more]
RBM39_HUMAN3.164e-1126.77RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE... [more]
RBM39_MOUSE5.397e-1128.57RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-005-B07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684906 ID=EY684906; Name=EY684906; organism=Citrus sinensis; type=EST; length=871bp
CCACGCGTCCGCCTTTGGCTAATGAACAGGCAATTGCTACATTCTTTAGC
CAAGTTATGACTGCTATTGGAGGAAATTCTGCTGGTCCTGGTGATGCAGT
AGTGAATGTTTACATCAATCATGAGAAGAAATTTGCATTTGTGGAGATGA
GAACTGTTGAAGAAGCGAGTAATGCAATGGCATTAGATGGGATTATATTT
GAGGGGGTTGCTGTGAGGGTAAGAAGACCTACGGATTACAACCCTACATT
AGCTGCAGCACTTGGTCCAGGCCAACCAAGTCCGAATCTTAACTTGGCAG
CTGTTGGACTTGCATCAGGTGCAATTGGTGGAGCAGAGGGACCTGATCGG
GTCTTTGTGGGTGGATTACCATACTACTTCACTGAAACTCAGATAAAAGA
GTTGCTCGAGTCTTTTGGGACTCTTCATGGTTTTGACCTCGTTAAGGATA
GAGACACGGGGAACTCTAAAGGATATGGTTTCTGTGTCTATCAGGATCCA
GCGGTGACAGACATAGCATGTGCAGCTCTAAATGGCTTGAAAATGGGTGA
TAAAACTTTAACTGTTCGGCGAGCTACTGCCCACAGTGGGCAATCTAAAA
CTGAACAAGAAAGCATATTAGCCCAGGCTCAACAGCATATAACTATCCAG
AAAAATGGCCCTTACAAACTAGTGGCATGAATACTCTCCGGAGGAGGAAT
GTCTTTATTTTGGAAAAACTCTAGCTAAAAGTTTATTGCTTTGATTGAGG
CAATTACCTGCCTGATGCCCTTGCCGAATGAAGAAGAAAAATTGCAGGAA
ATTTTTAAAAAGAATTTGAAGGGAAAGAATTCGGGTGAAAGATGGAAAGC
CTTGGGGAGATTGTTGTGTGT
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