EY710274

Overview
NameEY710274
Unique NameEY710274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1036
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710274 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 4.819e-28
Identity = 68/186 (36.56%), Postives = 94/186 (50.54%), Query Frame = 3
Query:   30 CVGFLSLVS----SVQGYGG--WINAHATFYXXXXXXXXXXXXXXYGNLYSQXXXXXXXXXXXXXXXXXXSCGACFQIMCANDPQWCLRGS--IIVTATNFCPP--------GGWCDPPNHHFDLSQPVFQHIAQYRAGNVPVIYRRVKCKINGGNKFTINGHSYFNLILITNVGRASEVRAASIK 539
            C+  LS+++    S+  Y G  W  A ATFY              YGN+Y                    +CG CFQ+ C + P  C  GS   +VTATN CPP        GGWC+PP  HFDL++P F  IA ++AG +PV YRRV CK  GG +F   G+ Y+ L+ + NVG   +++  ++K
Sbjct:    9 CLVILSMMAMIGTSMATYAGTPWRTASATFYGDDTGSATMGGACGYGNMYDSGYGVATTALSTALFNEGYACGQCFQLKCVSSPN-CYYGSPATVVTATNICPPNYGQASNNGGWCNPPRVHFDLTKPAFMKIANWKAGIIPVSYRRVACKKIGGIRFKFEGNGYWLLVYVMNVGGPGDIKTMAVK 193          
BLAST of EY710274 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.392e-27
Identity = 67/169 (39.64%), Postives = 82/169 (48.52%), Query Frame = 3
Query:   78 WINAHATFYXXXXXXXXXXXXXXYGNLYSQXXXXXXXXXXXXXXXXXXSCGACFQIMCANDPQWCLRGS--IIVTATNFCPP----------GGWCDPPNHHFDLSQPVFQHIAQYRAGNVPVIYRRVKCKINGGNKFTINGHSYFNLILITNVGRASEVRAASIKVQG 548
            W  AHATFY              YGNLY+                    CG C+Q+ C      C RGS  I VTATN CPP          GGWC+PP  HFDLS+P F  +A +RAG VPV+YRRV C   GG +F + G+ Y+ L  + NV  A +V    +K  G
Sbjct:   37 WTPAHATFYGDETASETMGGACGYGNLYASGYGTDTAALSTTLFKDGYGCGTCYQMRCVGTAS-CYRGSPAITVTATNLCPPNWAEDPDRGGGGWCNPPRAHFDLSKPAFMRMADWRAGIVPVMYRRVPCARAGGLRFALQGNPYWLLAYVMNVAGAGDVGDMWVKAGG 204          
BLAST of EY710274 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 7.689e-27
Identity = 56/119 (47.06%), Postives = 77/119 (64.71%), Query Frame = 3
Query:  222 SCGACFQIMCANDPQWCLRGS--IIVTATNFCPP--------GGWCDPPNHHFDLSQPVFQHIAQYRAGNVPVIYRRVKCKINGGNKFTINGHSYFNLILITNVGRASEVRAASIKVQG 548
            SCGAC ++ C N  +WCL+GS  ++VTAT+FCPP        GGWC+ P  H +LS   F  IA+ RA  +P+ YRRVKC   GG +F+++G S+F  +LI+NVG   EV    +KV+G
Sbjct:   78 SCGACLEVRCVNHIRWCLQGSPSVVVTATDFCPPNSGLSSDYGGWCNFPKEHLELSHAAFTGIAETRAEMIPIQYRRVKCGRRGGLRFSLSGSSHFFQVLISNVGLDGEV--VGVKVKG 194          

HSP 2 Score: 27.7202 bits (60), Expect = 7.689e-27
Identity = 8/10 (80.00%), Postives = 10/10 (100.00%), Query Frame = 2
Query:  560 PMSKNWGQNW 589
            PM++NWGQNW
Sbjct:  201 PMARNWGQNW 210          
BLAST of EY710274 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 1.302e-26
Identity = 66/156 (42.31%), Postives = 81/156 (51.92%), Query Frame = 3
Query:   78 WINAHATFYXXXXXXXXXXXXXX-YGNLYSQXXXXXXXXXXXXXXXXXXSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGG-WCDPPNHHFDLSQPVFQHIAQYRAGNVPVIYRRVKCKINGGNKFTINGHSYFNLILITNVGRASEVRAASIK 539
            W +A A +Y               YG+L                     SCGAC++IMC+ +PQ CL GSI +TAT+ CPPG  WC  PN HFDLS P+F  IAQ +A  VPV YRRV C   GG KF + G+     IL  NVG A ++ A S K
Sbjct:   45 WYDARAAYYGDIHGGGTELEGACGYGDLNKHGYGLATAALSTALFNSGASCGACYEIMCSPNPQGCLSGSIKITATDLCPPGSAWCYLPNKHFDLSLPMFIKIAQVKAKMVPVRYRRVPCAKTGGVKFEVKGNPNILTILPYNVGGAGDIIAVSAK 200          

HSP 2 Score: 23.8682 bits (50), Expect = 1.302e-26
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = 2
Query:  563 MSKNWGQNW*TH 598
            MS+ WGQNW T+
Sbjct:  209 MSRYWGQNWTTN 220          
BLAST of EY710274 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.822e-25
Identity = 59/157 (37.58%), Postives = 83/157 (52.87%), Query Frame = 3
Query:   78 WINAHATFYXXXXXXXXXXXXXXYGNLYSQXXXXXXXXXXXXXXXXXXSCGACFQIMC--ANDPQWCLRG-SIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQYRAGNVPVIYRRVKCKINGGNKFTINGHSYFNLILITNVGRASEVRAASIK 539
            W+   ATFY              YGNLY Q                  SCG C+ I+C     P WC  G +I VT TN+   GGWC+    +FD+SQP +++I  Y AG VP++Y++VKC   GG +F ING +YF L+L+TN+  +  + + S+K
Sbjct:   23 WLPGTATFYGGADGSGTMGGACGYGNLYDQRYGINNAALSTPLFNDGASCGQCYLIICDYGKAPDWCKLGKAITVTGTNY---GGWCNATRPYFDMSQPAWENIGIYSAGIVPILYQQVKCWRYGGVRFIINGFNYFELVLVTNMAGSGSIVSMSVK 176          

HSP 2 Score: 22.7126 bits (47), Expect = 1.822e-25
Identity = 6/9 (66.67%), Postives = 8/9 (88.89%), Query Frame = 2
Query:  563 MSKNWGQNW 589
            M++NWG NW
Sbjct:  185 MTRNWGANW 193          
BLAST of EY710274 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.367e-25
Identity = 52/116 (44.83%), Postives = 71/116 (61.21%), Query Frame = 3
Query:  222 SCGACFQIMCANDPQWCLRGS--IIVTATNFCPP--------GGWCDPPNHHFDLSQPVFQHIAQYRAGNVPVIYRRVKCKINGGNKFTINGHSYFNLILITNVGRASEVRAASIK 539
            +CG C+++ C N   WCLRGS  ++VTAT+FC P        GGWC+ P  HF++S+  F  +A+ +A  VPV +RRV C   GG +FTI G + F  +LITNV    EV A  +K
Sbjct:   82 ACGGCYEVRCVNHVLWCLRGSPTVVVTATDFCAPNLGLSDDYGGWCNFPKEHFEMSEAAFLRVAKAKADIVPVQFRRVSCDRAGGMRFTITGGASFLQVLITNVAADGEVAAVKVK 197          

HSP 2 Score: 28.1054 bits (61), Expect = 2.367e-25
Identity = 10/18 (55.56%), Postives = 12/18 (66.67%), Query Frame = 2
Query:  536 QSSRIKGQPMSKNWGQNW 589
            + SR    PM +NWGQNW
Sbjct:  197 KGSRTGWIPMGRNWGQNW 214          
BLAST of EY710274 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.010e-25
Identity = 55/115 (47.83%), Postives = 77/115 (66.96%), Query Frame = 3
Query:  222 SCGACFQIMCANDPQWCLRG-SIIVTATNFCPP--------GGWCDPPNHHFDLSQPVFQHIAQYRAGNVPVIYRRVKCKINGGNKFTINGHSYFNLILITNVGRASEVRAASIK 539
            +CG C+++ C +D ++CL G SI+VTATNFC P        GG C+PPNHHF L    F+ IA ++AG +P+ YRRV C  +GG +F + G S+F  +LI+NVG A +VR+  IK
Sbjct:   80 ACGGCYEVKCVDDLKYCLPGTSIVVTATNFCAPNFGLPADAGGVCNPPNHHFLLPIQSFEKIALWKAGVMPIQYRRVNCLRDGGVRFAVAGRSFFLTVLISNVGGAGDVRSVKIK 194          

HSP 2 Score: 21.9422 bits (45), Expect = 4.010e-25
Identity = 10/23 (43.48%), Postives = 13/23 (56.52%), Query Frame = 2
Query:  536 QSSRIKGQP-----MSKNWGQNW 589
            +S +IKG       M +NWGQ W
Sbjct:  189 RSVKIKGTESGWLSMGRNWGQIW 211          
BLAST of EY710274 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 4.987e-25
Identity = 53/118 (44.92%), Postives = 73/118 (61.86%), Query Frame = 3
Query:  225 CGACFQIMCANDPQWCLRGS--IIVTATNFCPP--------GGWCDPPNHHFDLSQPVFQHIAQYRAGNVPVIYRRVKCKINGGNKFTINGHSYFNLILITNVGRASEVRAASIKVQG 548
            CG C+++ C   P WC  GS  +++T TN CPP        GGWC+PP HHFD++ P F  +AQ  AG VPV YRRV C+  GG +F + G+ Y+ L+ + NVG A +V + S+K  G
Sbjct:  103 CGQCYELRCVKSP-WCNPGSPSVVITGTNLCPPNWYLPNDDGGWCNPPRHHFDMAPPSFLKLAQRVAGIVPVQYRRVPCQRTGGVRFCLQGNHYWLLLYVMNVGGAGDVSSLSVKTSG 219          
BLAST of EY710274 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.219e-16
Identity = 50/160 (31.25%), Postives = 74/160 (46.25%), Query Frame = 3
Query:   72 GGWINAHATFYXXXXXXXXXXXXXXYGNLYSQXXXXXXXXXXXXXXXXXXSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGGWCDPPN----HHFDLSQPVFQHIAQYRAGNVPVIYRRVKCKINGGNKFTINGHSYFNLILITNVGRASEVRAASIK 539
            G W++ HATFY               G   +                    CGAC+++   +        +++VTATN  PP     P N     HFDL+ P F  IA+ + G VPV YR+V C   GG K+TI G+  +N++++ NVG A +V   ++K
Sbjct:   80 GPWVDGHATFYGGRDASGTTEGGAC-GYKDADGYGAMTAAVSPALFDNGAGCGACYELKGDSGK------TVVVTATNQAPP-----PVNGMKGEHFDLTMPAFLSIAEEKLGVVPVSYRKVACVRQGGIKYTITGNPSYNMVMVKNVGGAGDVVKLTVK 227          

HSP 2 Score: 25.409 bits (54), Expect = 9.219e-16
Identity = 8/19 (42.11%), Postives = 13/19 (68.42%), Query Frame = 2
Query:  539 SSRIKGQPMSKNWGQNW*T 595
            + R+K  P+ ++WGQ W T
Sbjct:  229 TKRVKWTPLQRSWGQLWKT 247          
The following BLAST results are available for this feature:
BLAST of EY710274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
EXP18_ARATH4.819e-2836.56Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]
EXP30_ORYSJ2.392e-2739.64Putative expansin-A30 OS=Oryza sativa subsp. japon... [more]
EXP20_ARATH7.689e-2747.06Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]
EXP21_ARATH1.302e-2642.31Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP20_ORYSJ1.822e-2537.58Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP16_ORYSJ2.367e-2544.83Expansin-A16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP10_ORYSJ4.010e-2547.83Expansin-A10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP17_ORYSJ4.987e-2544.92Expansin-A17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP26_ORYSJ9.219e-1631.25Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-097-A02-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710274 ID=EY710274; Name=EY710274; organism=Citrus sinensis; type=EST; length=1036bp
CCACGCGTCCGGCTCTTTGAGTGATTCTTTGTGTTGGGTTTCTCTCATTG
GTCTCATCCGTTCAAGGTTATGGAGGTTGGATTAATGCTCATGCAACTTT
CTATGGAGGTGGTGATGCTTCTGGCACAATGGGGGGCGCTTGTGGGTACG
GCAATTTGTACAGCCAAGGTTATGGTACTAATACCGCAGCACTTAACACT
GCTTTGTTCAACAATGGCCTAAGTTGTGGAGCTTGCTTTCAAATTATGTG
CGCTAATGACCCGCAATGGTGCCTGCGTGGCTCCATCATTGTCACTGCCA
CTAACTTTTGCCCTCCTGGAGGCTGGTGTGATCCTCCTAACCACCACTTT
GATCTCTCTCAGCCTGTCTTCCAACACATTGCCCAGTATAGAGCTGGTAA
TGTTCCTGTAATCTACAGAAGGGTGAAATGCAAGATAAATGGGGGAAATA
AGTTCACAATCAATGGTCATTCTTACTTCAATTTAATTCTAATAACAAAC
GTGGGTAGAGCTAGTGAAGTGCGTGCTGCATCCATCAAAGTTCAAGGATT
AAAGGGCAACCGATGTCAAAAAACTGGGGCCAAAACTGGTAAACACATCA
GATTTAATAGACAAAGCCAATTTTAGATGTAACCACAGAAAAGCCAAAAG
GTTGATCTATAAAAGTTCCACCTACAATGGGCATTTGAGAAACATATCAG
GAAGAAAATCAAAAATAAGGATAATTAAGTAAAGAAGCAACGCATTATAA
ATTATAATACCTCAACAAAGGGGGGGGAAATAATATCCTGATTGGCCCAT
AGGCTAAAACAATATCAAAAGAGTGCAATATATTTTATATTTAAATTAAG
AACATAGAGGTAAAAAAAAATTAAAAAATTGTTAAAAAATGACAATAAAA
GATGAGTAATGATGATAGAAGAATTTCATAACTTAAATGTGAGTAGAAGA
ATTAAACATAAATAATAAAAACATAATAAAAAACAAAATAAACAAGCTGA
TAATATATCAAACAATATGCACTCATTAAATGACCA
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