EY684869

Overview
NameEY684869
Unique NameEY684869
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY684869 vs. ExPASy Swiss-Prot
Match: NAC2_RAT (Sodium/calcium exchanger 2 OS=Rattus norvegicus GN=Slc8a2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.802e-17
Identity = 46/124 (37.10%), Postives = 69/124 (55.65%), Query Frame = 1 
Query:  205 LLVPWRVLFAFVPPYHIAHGWIAFICSLIFISGIAYIVTKLTDIISCVTGINAYVIAFTALASGTSWPDLVASKIAAERQITADSAIANITCSNSVNIYVGIGIPWLIDTAYNFIVYKEPLRVQ 576
            L V W+VLFA +PP    HGW  F   ++ I  +  ++  L     C  G+   V A   +A GTS PD  ASK+AA +   AD++I N+T SN+VN+++G+G+ W +   Y + V   P  V+
Sbjct:  729 LTVFWKVLFACLPPTEYCHGWACFGVCILVIGLLTALIGDLASHFGCTVGLKDSVNAVVFVALGTSIPDTFASKVAALQDQCADASIGNVTGSNAVNVFLGLGVAWSVAAVY-WAVQGRPFEVR 851
[Close]
BLAST of EY684869 vs. ExPASy Swiss-Prot
Match: NCKX5_DANRE (Sodium/potassium/calcium exchanger 5 OS=Danio rerio GN=slc24a5 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 50/143 (34.97%), Postives = 75/143 (52.45%), Query Frame = 1 
Query:  181 LARIFWQSLLVPWRVLFAFVP----PYHIAHGWIAFICSLIFISGIAYIVTKLTDIISCVTGINAYVIAFTALASGTSWPDLVASKIAAERQITADSAIANITCSNSVNIYVGIGIPWLIDTAYNFIVYKEPLRVQNAEGLSF 597
            L RI W   L    +LF  VP    P+      + F+ S ++IS   Y++  +  I+    GI   V+  T LA+GTS PD VAS + A R+  +D A++NI  SN  ++ + +G+PW I T   F+    P+ V N+ GL F
Sbjct:  316 LKRILWVLSLPVSTLLFVSVPDCRRPFWKNFYMLTFLMSAVWISAFTYVLVWMVTIVGETLGIPDTVMGMTLLAAGTSIPDTVASVMVA-REGKSDMAMSNIVGSNVFDM-LCLGLPWFIQTV--FVDVGSPVEV-NSSGLVF 453
The following BLAST results are available for this feature:
BLAST of EY684869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
NAC2_RAT1.802e-1737.10Sodium/calcium exchanger 2 OS=Rattus norvegicus GN... [more]
NCKX5_DANRE9.579e-1134.97Sodium/potassium/calcium exchanger 5 OS=Danio reri... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-004-F09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684869 ID=EY684869; Name=EY684869; organism=Citrus sinensis; type=EST; length=888bp
TTTATTAATGTCTACCTTGTGTAGTTGCACACTAGTAAGTTTTAGTGGTT
TTTCAGTATTAAATGGTTCCTCTTTTTCATTTTTTTCCAAGCATAGTAAT
AGATCCTCACAAATTATTTCTAATTTCTTAAACAGTTGGAAAGCCCAGAA
TCTAGGAAAATGAACAATATTTATCTACGGCTAGCCAGGATATTTTGGCA
ATCTCTCCTTGTGCCATGGAGAGTTCTATTTGCATTTGTGCCTCCTTATC
ATATTGCTCATGGCTGGATAGCCTTCATTTGCTCTCTAATTTTCATCAGT
GGGATAGCTTACATTGTTACGAAGCTCACAGATATTATAAGCTGTGTCAC
AGGTATAAATGCTTATGTCATAGCATTTACAGCATTAGCAAGTGGAACTT
CATGGCCAGATTTAGTGGCAAGTAAGATTGCTGCTGAACGGCAGATAACA
GCAGACTCTGCTATTGCGAATATCACTTGCAGCAATTCTGTGAATATTTA
TGTTGGCATTGGCATTCCGTGGTTGATTGACACTGCATACAATTTCATAG
TCTACAAGGAACCCTTGCGGGTCCAGAATGCCGAGGGACTCAGCTTTTTC
ATTGCTTGAATTCTTCTGGACCTTCGGGGGGGTGCGTTGCTGTTCCGGCG
GTAACCGCGCCTACGGCTGGGGCGGAAGTTTAGCGGCTCTCCGCTTACAA
CGCCAGGGTGCCTCCGAGACACAACCGCAGGGATATGCGCGCAAAAGGAC
GGAAGATGAGAAAGGCGAAGCAGAAGAGAGAGAACCGACAAAAGATAGAG
ATAAACGTACAATGCAGCTAGGATGGGACGTAGAAGAGGGAACGTGGAAA
ACACTGACGCTTGACCATGAAACGGGGCAGCTCCGATT
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