EY684843

Overview
NameEY684843
Unique NameEY684843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length931
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684843 vs. ExPASy Swiss-Prot
Match: GRXS3_ARATH (Monothiol glutaredoxin-S3 OS=Arabidopsis thaliana GN=GRXS3 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.621e-24
Identity = 49/96 (51.04%), Postives = 71/96 (73.96%), Query Frame = 2
Query:  206 MDKVTRLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSPNEAMSLHTNGNLIPLVNR 493
            M+ + ++ SEK VVIFSK+SCC+ + +  LF +LGV+P +YE+D+   GKE+E AL ++GC+  VP VFI GQLVG  N+ MSLH N +L+P++ R
Sbjct:    1 MENLQKMISEKSVVIFSKNSCCMSHTIKTLFLDLGVNPTIYELDEISRGKEIEHALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKR 96          
BLAST of EY684843 vs. ExPASy Swiss-Prot
Match: GRXS5_ARATH (Monothiol glutaredoxin-S5 OS=Arabidopsis thaliana GN=GRXS5 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.003e-23
Identity = 47/96 (48.96%), Postives = 71/96 (73.96%), Query Frame = 2
Query:  206 MDKVTRLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAPVPAVFISGQLVGSPNEAMSLHTNGNLIPLVNR 493
            M+ + ++ SEK VVIFSK+SCC+ + +  LF + GV+P +YE+D+   G+E+E+AL ++GC+  VP VFI GQLVG  N+ MSLH N +L+P++ R
Sbjct:    1 MENLQKMISEKSVVIFSKNSCCMSHTIKTLFLDFGVNPTIYELDEINIGREIEQALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKR 96          
BLAST of EY684843 vs. ExPASy Swiss-Prot
Match: GRXC5_ORYSJ (Putative glutaredoxin-C5 OS=Oryza sativa subsp. japonica GN=GRXC5 PE=3 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 5.781e-22
Identity = 50/98 (51.02%), Postives = 70/98 (71.43%), Query Frame = 2
Query:  209 DKVTRLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRM-----GCNAPVPAVFISGQLVGSPNEAMSLHTNGNLIPLV 487
            ++V RLASE  VV+FS SSCC+C+AV  LF  +GVHP V+E+D DP G+++E+AL R+        A VP VFI G+LVG+ +  M+ H NG+L+PL+
Sbjct:   30 ERVERLASESAVVVFSVSSCCMCHAVKRLFCGMGVHPAVHELDLDPRGRDLERALARLVGAGGAAAAAVPVVFIGGKLVGAMDRVMAAHINGSLVPLL 127          
BLAST of EY684843 vs. ExPASy Swiss-Prot
Match: GRC12_ARATH (Putative glutaredoxin-C12 OS=Arabidopsis thaliana GN=GRXC12 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.781e-22
Identity = 47/91 (51.65%), Postives = 68/91 (74.73%), Query Frame = 2
Query:  206 MDKVTRLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRM-GCNAPVPAVFISGQLVGSPNEAMSLHTNGNL 475
            M++V  LASEK  VIF+KSSCC+C+++  LF ELG  P ++E+D+DP+G +ME+AL R+ G N  VPAVF+ G+ VGS  + +S H +G+L
Sbjct:    1 MERVRDLASEKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDKDPQGPDMERALFRVFGSNPAVPAVFVGGRYVGSAKDVISFHVDGSL 91          
BLAST of EY684843 vs. ExPASy Swiss-Prot
Match: GRXC3_ORYSJ (Glutaredoxin-C3 OS=Oryza sativa subsp. japonica GN=GRXC3 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.288e-21
Identity = 52/100 (52.00%), Postives = 70/100 (70.00%), Query Frame = 2
Query:  212 KVTRLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRM-GCNAP-------VPAVFISGQLVGSPNEAMSLHTNGNLIPLV 487
            +V RLASE  VV+FS SSCC+C+AV  LF  +GVHP V+E+D DP G+E+E+AL R+ G   P       VP VFI G+LVG+ +  M+ H NG+L+PL+
Sbjct:   28 RVERLASESAVVVFSVSSCCMCHAVKRLFCGMGVHPTVHELDLDPRGRELERALARLVGYGGPAAASPPVVPVVFIGGKLVGAMDRVMAAHINGSLVPLL 127          
BLAST of EY684843 vs. ExPASy Swiss-Prot
Match: GRC11_ARATH (Glutaredoxin-C11 OS=Arabidopsis thaliana GN=GRXC11 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.197e-21
Identity = 44/91 (48.35%), Postives = 69/91 (75.82%), Query Frame = 2
Query:  206 MDKVTRLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRMGCNAP-VPAVFISGQLVGSPNEAMSLHTNGNL 475
            M+++  L+S+K  VIF+KSSCC+C+++  LF ELG  P ++E+D+DPEG+EME+AL  +G + P VPAVF+ G+ +GS  + +S H +G+L
Sbjct:    1 MERIRDLSSKKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDKDPEGREMERALRALGSSNPAVPAVFVGGRYIGSAKDIISFHVDGSL 91          
BLAST of EY684843 vs. ExPASy Swiss-Prot
Match: GRXC2_ORYSJ (Putative glutaredoxin-C2 OS=Oryza sativa subsp. japonica GN=GRXC2 PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 1.090e-20
Identity = 49/94 (52.13%), Postives = 68/94 (72.34%), Query Frame = 2
Query:  209 DKVTRLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRM-GCNAPVPAVFISGQLVGSPNEAMSLHTNGNLIPLV 487
            ++V RL+S++ VVIF  S+C +C+ V  LF ELGV   V+E+D+DP GK++E+AL  M G   PVPAVFI G+LVG  ++ MSLH  G L+PL+
Sbjct:    3 ERVARLSSQRAVVIFGASNCFMCHVVKTLFSELGVSWAVHEVDKDPNGKDVERALAGMVGRTPPVPAVFIGGKLVGPTDQVMSLHLAGKLVPLL 96          
BLAST of EY684843 vs. ExPASy Swiss-Prot
Match: GRC11_ORYSJ (Putative glutaredoxin-C11 OS=Oryza sativa subsp. japonica GN=GRXC11 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.205e-19
Identity = 51/99 (51.52%), Postives = 65/99 (65.66%), Query Frame = 2
Query:  209 DKVTRLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMR-----MGCNAP-VPAVFISGQLVGSPNEAMSLHTNGNLIPLV 487
            + V RLASE+ VV+F+KS CC+C AV  L  EL V   V+E+D+DP GKEMEK L R      G   P VPAVFI G LVG  ++ M++H  G L+PL+
Sbjct:    3 EMVARLASERAVVVFTKSGCCMCTAVTTLLGELAVSAAVHELDRDPLGKEMEKELARRLYGSSGRGGPAVPAVFIGGSLVGGTSKVMAMHLKGELVPLL 101          
BLAST of EY684843 vs. ExPASy Swiss-Prot
Match: GRXS8_ORYSJ (Monothiol glutaredoxin-S8 OS=Oryza sativa subsp. japonica GN=GRXS8 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.574e-19
Identity = 53/106 (50.00%), Postives = 67/106 (63.21%), Query Frame = 2
Query:  206 MDKVTRLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDPEGKEMEKALMRM------------GCNAPVPAVFISGQLVGSPNEAMSLHTNGNLIPLV 487
            MD+VTRLAS+K VV+FSKSSC + +AV  L +ELGV   V E+D++P G +ME AL  M            G    VP VFI G+LVGS +  MSLH  G L+PL+
Sbjct:    1 MDRVTRLASQKAVVVFSKSSCGMSHAVTRLLRELGVDARVVELDEEPAGADMENALAGMLLAGTAANGGGRGRGVVVPTVFIGGRLVGSTDRVMSLHVAGGLVPLL 106          
BLAST of EY684843 vs. ExPASy Swiss-Prot
Match: GRC15_ORYSJ (Glutaredoxin-C15 OS=Oryza sativa subsp. japonica GN=GRXC15 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.056e-19
Identity = 48/96 (50.00%), Postives = 72/96 (75.00%), Query Frame = 2
Query:  206 MDKVTRLASEKGVVIFSKSSCCLCYAVNILFQELGVHPMVYEIDQDP-EGKEMEKAL-MRMGCNAPVPAVFISGQLVGSPNEAMSLHTNGNLIPLV 487
            M++V +L++EK VVIF+ S+C +C+ V  LF +LGV   V+E+D+DP  G++ME+ L  R+G + PVPAVFI+G+LVGS +  MSLH  G L+P++
Sbjct:    1 MERVAKLSTEKAVVIFTASNCPMCHTVVSLFSDLGVGAAVHELDRDPLHGRDMERDLARRLGRSPPVPAVFIAGKLVGSTDRVMSLHLAGKLVPML 96          
The following BLAST results are available for this feature:
BLAST of EY684843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
GRXS3_ARATH3.621e-2451.04Monothiol glutaredoxin-S3 OS=Arabidopsis thaliana ... [more]
GRXS5_ARATH4.003e-2348.96Monothiol glutaredoxin-S5 OS=Arabidopsis thaliana ... [more]
GRXC5_ORYSJ5.781e-2251.02Putative glutaredoxin-C5 OS=Oryza sativa subsp. ja... [more]
GRC12_ARATH5.781e-2251.65Putative glutaredoxin-C12 OS=Arabidopsis thaliana ... [more]
GRXC3_ORYSJ1.288e-2152.00Glutaredoxin-C3 OS=Oryza sativa subsp. japonica GN... [more]
GRC11_ARATH2.197e-2148.35Glutaredoxin-C11 OS=Arabidopsis thaliana GN=GRXC11... [more]
GRXC2_ORYSJ1.090e-2052.13Putative glutaredoxin-C2 OS=Oryza sativa subsp. ja... [more]
GRC11_ORYSJ1.205e-1951.52Putative glutaredoxin-C11 OS=Oryza sativa subsp. j... [more]
GRXS8_ORYSJ1.574e-1950.00Monothiol glutaredoxin-S8 OS=Oryza sativa subsp. j... [more]
GRC15_ORYSJ2.056e-1950.00Glutaredoxin-C15 OS=Oryza sativa subsp. japonica G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-004-D05-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684843 ID=EY684843; Name=EY684843; organism=Citrus sinensis; type=EST; length=931bp
AGCTTTAAATCCTTTTCTCCCTTGCTCACTTTTCCTTCTCTCAAATCCTT
CCTCACCATCACCACCCCGAATTCAACTAGAGTTCGGTTTGATGGTATAT
AGGTTTTAAGTGAACTCTACGTAACCCGAGGACTTCTCTGTGTTTAACAT
TTCCCGTCCCGTGATACTTCAATCTTTAAGTAAGGGAGAAGCCACTCTTA
TCGTCATGGACAAGGTGACAAGGTTGGCCTCAGAGAAAGGAGTAGTAATA
TTCAGCAAGAGCTCGTGTTGCCTCTGCTATGCAGTCAACATTCTATTTCA
GGAACTTGGTGTCCACCCTATGGTTTATGAGATTGACCAAGATCCTGAAG
GCAAGGAAATGGAGAAAGCTCTGATGAGGATGGGTTGTAACGCGCCCGTT
CCAGCAGTGTTCATTTCTGGACAGCTTGTGGGATCCCCCAATGAAGCCAT
GTCTCTCCATACTAATGGCAATCTGATTCCACTGGTGAACCGTTACCAGC
CTTTCTCATAAACCAACCTCCTCTGAATGCCACATACACACTGGCGAATA
AATACAGAGACCATTATTCATTCACAAAACCTAATAGAAGCGCACGACTC
CAACAATGGCCGAGGCGGTAAAAACTCCAGCAGACGCGAAGATTATCCAC
ACAAAACCCATAACGACGACCCACGCATAACAACCACCCCGAGCCCCTGA
ACACCCCAGGCGCCACACCCCCACTGCCCCCCCCCGCAACGCATACCCGA
CCCACACCCGCCACCGCGCAGCAACCACCGCCCAACGCAGCCCACGACGC
GCGCACTCCGACGACAATCCCTTCCCACCAACCCGCCCACAAAATCGCCG
CCACTCTCGAACCCGCACTCGCGACTAACCCCAACGGGACACAGCCAATT
CCCACCCCCCCATCCAATCCACCACAGCTCC
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