EY684837

Overview
NameEY684837
Unique NameEY684837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length960
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684837 vs. ExPASy Swiss-Prot
Match: RAB7A_DICDI (Ras-related protein Rab-7A OS=Dictyostelium discoideum GN=rab7A PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.032e-21
Identity = 53/86 (61.63%), Postives = 63/86 (73.26%), Query Frame = 2
Query:   14 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSGC 271
            PFVVLGNKID++  N RVVS+K+A +WC SKGNIPYFETSAKE INVE+AFQ IA+NA+K  +     +P  I V    QP  SGC
Sbjct:  119 PFVVLGNKIDLE--NQRVVSQKRAASWCQSKGNIPYFETSAKEAINVEQAFQTIARNAIKLEDGLVFPIPTNIQVIPEPQPAKSGC 202          
BLAST of EY684837 vs. ExPASy Swiss-Prot
Match: RAB7A_BOVIN (Ras-related protein Rab-7a OS=Bos taurus GN=RAB7A PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.490e-20
Identity = 52/96 (54.17%), Postives = 66/96 (68.75%), Query Frame = 2
Query:    2 PRVRPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIY----LPDTIDVGNSSQPRSSGCEC 277
            P   PFVVLGNKID++   +R V+ K+A+AWC SK NIPYFETSAKE INVE+AFQ I +NALK   E E+Y     P  +D  + ++P + GC C
Sbjct:  115 PENFPFVVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIVRNALKQETEVELYNEFPEPIKLDKNDRTKPSAEGCSC 207          
BLAST of EY684837 vs. ExPASy Swiss-Prot
Match: RAB7A_RAT (Ras-related protein Rab-7a OS=Rattus norvegicus GN=Rab7a PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.648e-19
Identity = 51/94 (54.26%), Postives = 66/94 (70.21%), Query Frame = 2
Query:    2 PRVRPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIY--LPDTIDVGNSSQPRSSGCEC 277
            P   PFVVLGNKID++   +R V+ K+A+AWC SK NIPYFETSAKE INVE+AFQ IA+NALK   E E+Y   P+ I +  + + ++S   C
Sbjct:  115 PENFPFVVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNERAKASAESC 205          
BLAST of EY684837 vs. ExPASy Swiss-Prot
Match: RAB7A_PONAB (Ras-related protein Rab-7a OS=Pongo abelii GN=RAB7A PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.648e-19
Identity = 51/96 (53.12%), Postives = 65/96 (67.71%), Query Frame = 2
Query:    2 PRVRPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIY----LPDTIDVGNSSQPRSSGCEC 277
            P   PFVVLGNKID++   +R V+ K+A+AWC SK NIPYFETSAKE INVE+AFQ IA+NALK   E E+Y     P  +D  + ++  +  C C
Sbjct:  115 PENFPFVVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPKPIKLDKNDRAKASAESCSC 207          
BLAST of EY684837 vs. ExPASy Swiss-Prot
Match: RAB7A_MOUSE (Ras-related protein Rab-7a OS=Mus musculus GN=Rab7a PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.648e-19
Identity = 51/94 (54.26%), Postives = 66/94 (70.21%), Query Frame = 2
Query:    2 PRVRPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIY--LPDTIDVGNSSQPRSSGCEC 277
            P   PFVVLGNKID++   +R V+ K+A+AWC SK NIPYFETSAKE INVE+AFQ IA+NALK   E E+Y   P+ I +  + + ++S   C
Sbjct:  115 PENFPFVVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNDRAKASAESC 205          
BLAST of EY684837 vs. ExPASy Swiss-Prot
Match: RAB7A_HUMAN (Ras-related protein Rab-7a OS=Homo sapiens GN=RAB7A PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.648e-19
Identity = 51/94 (54.26%), Postives = 66/94 (70.21%), Query Frame = 2
Query:    2 PRVRPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIY--LPDTIDVGNSSQPRSSGCEC 277
            P   PFVVLGNKID++   +R V+ K+A+AWC SK NIPYFETSAKE INVE+AFQ IA+NALK   E E+Y   P+ I +  + + ++S   C
Sbjct:  115 PENFPFVVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNDRAKASAESC 205          
BLAST of EY684837 vs. ExPASy Swiss-Prot
Match: RAB7A_CANFA (Ras-related protein Rab-7a OS=Canis familiaris GN=RAB7A PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.648e-19
Identity = 51/94 (54.26%), Postives = 66/94 (70.21%), Query Frame = 2
Query:    2 PRVRPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIY--LPDTIDVGNSSQPRSSGCEC 277
            P   PFVVLGNKID++   +R V+ K+A+AWC SK NIPYFETSAKE INVE+AFQ IA+NALK   E E+Y   P+ I +  + + ++S   C
Sbjct:  115 PENFPFVVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNDRAKTSAESC 205          
BLAST of EY684837 vs. ExPASy Swiss-Prot
Match: RAB7A_RABIT (Ras-related protein Rab-7a OS=Oryctolagus cuniculus GN=RAB7A PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.107e-18
Identity = 50/96 (52.08%), Postives = 64/96 (66.67%), Query Frame = 2
Query:    2 PRVRPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIY----LPDTIDVGNSSQPRSSGCEC 277
            P   PFVVLGNKID++   +R V+ K+A+AW  SK NIPYFETSAKE INVE+AFQ IA+NALK   E E+Y     P  +D  + ++  +  C C
Sbjct:  115 PENFPFVVLGNKIDLE---NRQVATKRAQAWSYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPMKLDKNDRAKTSAESCSC 207          
BLAST of EY684837 vs. ExPASy Swiss-Prot
Match: RAB7_NEUCR (Probable Ras-related protein Rab7 OS=Neurospora crassa GN=17E5.300 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.487e-17
Identity = 47/88 (53.41%), Postives = 58/88 (65.91%), Query Frame = 2
Query:   14 PFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSGCEC 277
            PFVVLGNKID++  + RV+S K+A  +C SKGNIPYFETSAKE INVE+AF+ IA+NAL   E EE        +    +    GC C
Sbjct:  119 PFVVLGNKIDMEE-SKRVISTKRAMTFCQSKGNIPYFETSAKEAINVEQAFEVIARNALMQEESEEFSGDFQDPINIHIENDRDGCAC 205          
BLAST of EY684837 vs. ExPASy Swiss-Prot
Match: YPT7_SCHPO (GTP-binding protein ypt7 OS=Schizosaccharomyces pombe GN=ypt7 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.105e-15
Identity = 41/92 (44.57%), Postives = 62/92 (67.39%), Query Frame = 2
Query:    2 PRVRPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGNSSQPRSSGCEC 277
            P   PF++LGNK+DV+    R+VS+ KA A+C ++G IPYFETSAKE INV+EAF+ +AK AL++ + ++I    T  +    + + + C C
Sbjct:  115 PETFPFILLGNKVDVEE-QKRMVSKSKALAFCQARGEIPYFETSAKEAINVQEAFETVAKLALENMDSDDIAADFTDPIHLDMESQKTSCYC 205          
The following BLAST results are available for this feature:
BLAST of EY684837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RAB7A_DICDI1.032e-2161.63Ras-related protein Rab-7A OS=Dictyostelium discoi... [more]
RAB7A_BOVIN1.490e-2054.17Ras-related protein Rab-7a OS=Bos taurus GN=RAB7A ... [more]
RAB7A_RAT1.648e-1954.26Ras-related protein Rab-7a OS=Rattus norvegicus GN... [more]
RAB7A_PONAB1.648e-1953.13Ras-related protein Rab-7a OS=Pongo abelii GN=RAB7... [more]
RAB7A_MOUSE1.648e-1954.26Ras-related protein Rab-7a OS=Mus musculus GN=Rab7... [more]
RAB7A_HUMAN1.648e-1954.26Ras-related protein Rab-7a OS=Homo sapiens GN=RAB7... [more]
RAB7A_CANFA1.648e-1954.26Ras-related protein Rab-7a OS=Canis familiaris GN=... [more]
RAB7A_RABIT3.107e-1852.08Ras-related protein Rab-7a OS=Oryctolagus cuniculu... [more]
RAB7_NEUCR4.487e-1753.41Probable Ras-related protein Rab7 OS=Neurospora cr... [more]
YPT7_SCHPO1.105e-1544.57GTP-binding protein ypt7 OS=Schizosaccharomyces po... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-004-C10-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684837 ID=EY684837; Name=EY684837; organism=Citrus sinensis; type=EST; length=960bp
CCCACGCGTCCGCCCCTTTGTTGTTTTAGGAAATAAGATTGATGTAGATG
GTGGAAACAGTAGGGTGGTTTCGGAGAAGAAGGCTCGAGCATGGTGTGCT
TCCAAAGGAAATATTCCTTACTTTGAGACCTCTGCAAAAGAAGGCATTAA
TGTGGAAGAAGCTTTCCAGTGCATAGCTAAAAATGCTTTGAAGAGTGGGG
AGGAGGAAGAGATATACTTGCCGGACACCATTGATGTTGGTAACAGCAGC
CAGCCAAGGTCAAGTGGATGCGAGTGCTAAAGATATGGTCTAATTTTTTC
AAGGAGCAATAAGCAGTATAACAAATGATTTGGCCTTTTTAACCATTTTT
ATGGGTATGTATAAGGTTACATTGTACATTAGTGTTTGTGTGAAACGGGG
GGGGTCATTCCTACTAGTTACCTTTACTTGCCTGGGTCCTTCAGTGCCAC
GTACTGCTCGAAAAGACCAGCTCAACTCCTACAACGGAAGACTTCCCGAC
GGCACTTTATACCCGGCATCCCAACGCCCCACCCCGATGCCCCGACCACA
GCCCATCAAACGAACCCCCAACGCGACACCCCCCAAAGACAAACGCGGAA
GAAATAGACACATACATGCACCAACCACAAGCACAAAACATAGCAAGGTC
TCCACCTGGACCGCAGGTAAGACACAAGAAGACAAGTACCGGGACAGACG
CGACGTACCAGATAGGCACGCCAGAGACCACCGCAGGCAGCGCGCGGGCA
CCACCAACAGGGAGGACGCCCAGTTCGCATGCCGCGTGGGTCACCGGACG
GGAGGAGGCGGATCCCCTCACCTCGATCCGGCACCACACGCAGCCACCCA
CACCCTCCGCCACGGACCACCAATCAAAGCAATCTACCGCGAGGCGCCGG
GTTAACCGCCAATCGGACCACACTGCCTCCAGATCGCCCGGAGCCACGCG
CCACGCGCGC
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