EY684820

Overview
NameEY684820
Unique NameEY684820
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length908
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684820 vs. ExPASy Swiss-Prot
Match: RS8_CAEEL (40S ribosomal protein S8 OS=Caenorhabditis elegans GN=rps-8 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.651e-15
Identity = 42/80 (52.50%), Postives = 52/80 (65.00%), Query Frame = 2
Query:   80 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRIL 319
            MGISRDS H                 +ELGR  ANTK+ +++ VR +R RGGN K+RALRLD+GN+SW SE  TRKTRI+
Sbjct:    1 MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHR-VRLVRTRGGNEKYRALRLDSGNFSWASEQTTRKTRIV 79          
BLAST of EY684820 vs. ExPASy Swiss-Prot
Match: RS8_SPOFR (40S ribosomal protein S8 OS=Spodoptera frugiperda GN=RpS8 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.476e-14
Identity = 42/80 (52.50%), Postives = 49/80 (61.25%), Query Frame = 2
Query:   80 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRIL 319
            MGISRD  H                 YELGR  ANTKL   + +  +R RGGN K+RALRLDTGN+SWGSE  TRK+RI+
Sbjct:    1 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALRLDTGNFSWGSECSTRKSRII 79          
BLAST of EY684820 vs. ExPASy Swiss-Prot
Match: RS8_DROME (40S ribosomal protein S8 OS=Drosophila melanogaster GN=RpS8 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.927e-14
Identity = 42/79 (53.16%), Postives = 49/79 (62.03%), Query Frame = 2
Query:   80 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRI 316
            MGISRDS H                 +ELGR  ANTKL S + V ++R RGGN K RALRL+TGN++W SE V RKTRI
Sbjct:    1 MGISRDSAHKRRATGGKRKSLRKKRKFELGRPAANTKLGSGR-VHKVRTRGGNTKLRALRLETGNFAWASEGVARKTRI 78          
BLAST of EY684820 vs. ExPASy Swiss-Prot
Match: RS8_XENLA (40S ribosomal protein S8 OS=Xenopus laevis GN=rps8 PE=2 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 2.517e-14
Identity = 41/80 (51.25%), Postives = 49/80 (61.25%), Query Frame = 2
Query:   80 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRIL 319
            MGISRD+ H                 YE GR  ANTK+   + +  +RVRGGN K+RALRLD GN+SWGSE  TRKTRI+
Sbjct:    1 MGISRDNWHKRRKTGGKRKPYHKKRKYEPGRPAANTKIGPRR-IHTVRVRGGNKKYRALRLDAGNFSWGSECCTRKTRII 79          
BLAST of EY684820 vs. ExPASy Swiss-Prot
Match: RS8_LEIMA (40S ribosomal protein S8 OS=Leishmania major GN=RPS8 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.443e-11
Identity = 36/80 (45.00%), Postives = 46/80 (57.50%), Query Frame = 2
Query:   80 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRIL 319
            MGI R  +H                  ELGR PANT+L + + V  +R RGGN K RALRLDTGN++W SEA+  + R+L
Sbjct:    1 MGIVRSRLHKRKITGGKTKIHRKRMKAELGRLPANTRLGARR-VSPVRARGGNFKIRALRLDTGNFAWASEAIAHRVRLL 79          
The following BLAST results are available for this feature:
BLAST of EY684820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RS8_CAEEL8.651e-1552.5040S ribosomal protein S8 OS=Caenorhabditis elegans... [more]
RS8_SPOFR1.476e-1452.5040S ribosomal protein S8 OS=Spodoptera frugiperda ... [more]
RS8_DROME1.927e-1453.1640S ribosomal protein S8 OS=Drosophila melanogaste... [more]
RS8_XENLA2.517e-1451.2540S ribosomal protein S8 OS=Xenopus laevis GN=rps8... [more]
RS8_LEIMA4.443e-1145.0040S ribosomal protein S8 OS=Leishmania major GN=RP... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-004-B01-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684820 ID=EY684820; Name=EY684820; organism=Citrus sinensis; type=EST; length=908bp
CCACGCGTCCGGAGCGGGAGCAAGGAGCACATTACGTTACAGTGAGCAGC
GCCGCAGCAGCAGCTACAGCTCAGCCAAGATGGGTATTTCCAGAGATTCA
ATGCATAAGAGACGCGCCACTGGTGGCAAGAAGAAAGCTTGGAGGAAGAA
GCGCAAGTACGAACTTGGTCGTCAGCCTGCAAATACCAAGCTCTCTAGCA
ACAAGACTGTACGGAGAATTCGTGTCAGAGGAGGCAATGTGAAGTGGAGG
GCCCTGAGACTGGACACTGGGAACTATTCCTGGGGTAGCGAGGCTGTCAC
CCGCAAGACCCGTATCCTGGGTGGTGGTGAAGCTGCACCGGGAACTGATC
AAGGCCAGCCCACCAAAGCAAAGCGGCACGCCGGCAGACGCGACCCCACA
CCGGGGGGGGGGGGGGGGGGCGGAAGCACCAGACCCCCAAGACCACAGGC
GCACCACCCTCACCCGACCGGACCAACAGATCCCCCCCCCCACCCGCAAC
CACCACAAGCCGCCTCCACTGGACGAACACGACAGGAGGGGCGGGACCGA
GGACCGAAGCGCACAAGACGCCAGCAGCCCCCGACAGGCCGCGCACACCG
CCGCCGGGCGCGACAGCCACGAGCACACCGCGACGGGACCCCCGCACCGA
CACCGCCGACACCACACAGGCAGAAAGCAGAGCGCCCGCGAACCAAGCAC
CCCAAGCCGGACCCAACGCCCGAGGGACAGCCGACGCAGGCCCGGAGGCC
ACACAGCCAACCGCGGAACACCAGCGGATACAACGGCAGGCGACCACAAG
AGCGGCCGCGCAGGAACCGACGAAAAAACCCCGACACGCCCGCCCCGAAG
GCGCGCACAACACAAACGCGCGGAACGAGGACAGAGAAGCCGACGGACAA
ACAGACGG
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