EY684818

Overview
NameEY684818
Unique NameEY684818
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length964
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY684818_ssr588 microsatellite EY684818_ssr588:588..599. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY684818 vs. ExPASy Swiss-Prot
Match: IAA11_ORYSJ (Auxin-responsive protein IAA11 OS=Oryza sativa subsp. japonica GN=IAA11 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 7.673e-25
Identity = 57/85 (67.06%), Postives = 67/85 (78.82%), Query Frame = 3
Query:   15 MFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKN 269
            MF+ FTIG+C SH    Q     ++L D L   EYV TYED+DGDWMLVGDVPW+MF E+C+RLRIMKGSEAIGLAPRA+EKCK+
Sbjct:  156 MFTSFTIGKCGSH----QQLKESNKLRDDL---EYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVEKCKS 233          
BLAST of EY684818 vs. ExPASy Swiss-Prot
Match: IAA19_ORYSJ (Auxin-responsive protein IAA19 OS=Oryza sativa subsp. japonica GN=IAA19 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.447e-23
Identity = 48/83 (57.83%), Postives = 63/83 (75.90%), Query Frame = 3
Query:   12 KMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEK 260
            KMFSCF  G+  SH    +D L++    D L   EYVLTYED+D DWMLVGD+PWD+FT +CR+LRIM+GS+A G+APR++E+
Sbjct:  194 KMFSCFITGRSSSHKTSKRDRLTDGSRADALKDQEYVLTYEDKDADWMLVGDLPWDLFTTSCRKLRIMRGSDAAGMAPRSLEQ 276          
BLAST of EY684818 vs. ExPASy Swiss-Prot
Match: IAA17_ORYSJ (Auxin-responsive protein IAA17 OS=Oryza sativa subsp. japonica GN=IAA17 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.890e-23
Identity = 57/87 (65.52%), Postives = 64/87 (73.56%), Query Frame = 3
Query:   12 KMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKNR 272
            KMF  FT G+         DGLSESR        EYVLTYED+DGDWMLVGDVPW+MF  +CRRLRIMKGS+AIGLAPRA++K KNR
Sbjct:  184 KMFIGFTTGK---------DGLSESR-----KDGEYVLTYEDKDGDWMLVGDVPWEMFANSCRRLRIMKGSDAIGLAPRAVDKSKNR 256          
BLAST of EY684818 vs. ExPASy Swiss-Prot
Match: IAA5_ORYSJ (Auxin-responsive protein IAA5 OS=Oryza sativa subsp. japonica GN=IAA5 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.354e-21
Identity = 46/83 (55.42%), Postives = 59/83 (71.08%), Query Frame = 3
Query:   12 KMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEK 260
            KMFSCF  GQ        +D L+     D L   EYVLTYED+D DWMLVGD+PWD+FT  CR+L+IM+GS+A G+APR++E+
Sbjct:  184 KMFSCFITGQSGLRKSSNRDRLTNGSKADALQDQEYVLTYEDKDADWMLVGDLPWDLFTTICRKLKIMRGSDAAGIAPRSIEQ 266          
BLAST of EY684818 vs. ExPASy Swiss-Prot
Match: IAA5_ORYSI (Auxin-responsive protein IAA5 OS=Oryza sativa subsp. indica GN=IAA5 PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 1.354e-21
Identity = 46/83 (55.42%), Postives = 59/83 (71.08%), Query Frame = 3
Query:   12 KMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEK 260
            KMFSCF  GQ        +D L+     D L   EYVLTYED+D DWMLVGD+PWD+FT  CR+L+IM+GS+A G+APR++E+
Sbjct:  185 KMFSCFITGQSGLRKSSNRDRLTNGSKADALQDQEYVLTYEDKDADWMLVGDLPWDLFTTICRKLKIMRGSDAAGIAPRSIEQ 267          
BLAST of EY684818 vs. ExPASy Swiss-Prot
Match: IAA3_ORYSJ (Auxin-responsive protein IAA3 OS=Oryza sativa subsp. japonica GN=IAA3 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.310e-21
Identity = 46/53 (86.79%), Postives = 51/53 (96.23%), Query Frame = 3
Query:  114 EYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKNR 272
            EYVLTYED+DGDWMLVGDVPW+MFT++CRRLRIMKGS+AIGLAPRA EK KNR
Sbjct:  210 EYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSDAIGLAPRAGEKSKNR 262          
BLAST of EY684818 vs. ExPASy Swiss-Prot
Match: IAA13_ORYSJ (Auxin-responsive protein IAA13 OS=Oryza sativa subsp. japonica GN=IAA13 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.336e-20
Identity = 44/61 (72.13%), Postives = 54/61 (88.52%), Query Frame = 3
Query:   93 MDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKNRT 275
            M+ ++GS+ V TYED+DGDWMLVGDVPW MF E+C+RLRIMKGSEAIGLAPRA +K KN++
Sbjct:  176 MNEVNGSDAVTTYEDKDGDWMLVGDVPWQMFVESCKRLRIMKGSEAIGLAPRAKDKYKNKS 236          
BLAST of EY684818 vs. ExPASy Swiss-Prot
Match: IAA13_ORYSI (Auxin-responsive protein IAA13 OS=Oryza sativa subsp. indica GN=IAA13 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.336e-20
Identity = 44/61 (72.13%), Postives = 54/61 (88.52%), Query Frame = 3
Query:   93 MDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKNRT 275
            M+ ++GS+ V TYED+DGDWMLVGDVPW MF E+C+RLRIMKGSEAIGLAPRA +K KN++
Sbjct:  176 MNEVNGSDAVTTYEDKDGDWMLVGDVPWQMFVESCKRLRIMKGSEAIGLAPRAKDKYKNKS 236          
BLAST of EY684818 vs. ExPASy Swiss-Prot
Match: IAA1_ORYSJ (Auxin-responsive protein IAA1 OS=Oryza sativa subsp. japonica GN=IAA1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.824e-19
Identity = 47/82 (57.32%), Postives = 58/82 (70.73%), Query Frame = 3
Query:   12 KMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAME 257
            K FS FTI +             E +L+D ++G+EYV TYED+DGDWMLVGDVPW MF ETC+RLR+MK SEA+ LAPRA +
Sbjct:  127 KFFSHFTIRKFAD---------DERKLVDAVNGTEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRLMKSSEAVNLAPRAAQ 199          
BLAST of EY684818 vs. ExPASy Swiss-Prot
Match: IAA15_ORYSJ (Auxin-responsive protein IAA15 OS=Oryza sativa subsp. japonica GN=IAA15 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.824e-19
Identity = 47/80 (58.75%), Postives = 57/80 (71.25%), Query Frame = 3
Query:   12 KMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRA 251
            K FS FTI +          G  E +L+D + G+EYV TYED+DGDWMLVGDVPW MF ETC+RLR+MK SEA+ LAPR+
Sbjct:  141 KFFSHFTIRKL---------GNEEMKLVDAVSGNEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRLMKSSEAVNLAPRS 211          
The following BLAST results are available for this feature:
BLAST of EY684818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
IAA11_ORYSJ7.673e-2567.06Auxin-responsive protein IAA11 OS=Oryza sativa sub... [more]
IAA19_ORYSJ1.447e-2357.83Auxin-responsive protein IAA19 OS=Oryza sativa sub... [more]
IAA17_ORYSJ1.890e-2365.52Auxin-responsive protein IAA17 OS=Oryza sativa sub... [more]
IAA5_ORYSJ1.354e-2155.42Auxin-responsive protein IAA5 OS=Oryza sativa subs... [more]
IAA5_ORYSI1.354e-2155.42Auxin-responsive protein IAA5 OS=Oryza sativa subs... [more]
IAA3_ORYSJ2.310e-2186.79Auxin-responsive protein IAA3 OS=Oryza sativa subs... [more]
IAA13_ORYSJ3.336e-2072.13Auxin-responsive protein IAA13 OS=Oryza sativa sub... [more]
IAA13_ORYSI3.336e-2072.13Auxin-responsive protein IAA13 OS=Oryza sativa sub... [more]
IAA1_ORYSJ2.824e-1957.32Auxin-responsive protein IAA1 OS=Oryza sativa subs... [more]
IAA15_ORYSJ2.824e-1958.75Auxin-responsive protein IAA15 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-004-A10-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684818 ID=EY684818; Name=EY684818; organism=Citrus sinensis; type=EST; length=964bp
CCACGCGTCCGAAGATGTTCAGCTGCTTTACCATTGGGCAATGTGATTCT
CATGGTCTTCCGGGGCAAGACGGCCTAAGTGAGAGTCGTCTGATGGATCT
TCTCCATGGTTCTGAATATGTGCTTACATATGAAGACAGGGATGGTGACT
GGATGCTTGTTGGTGATGTCCCTTGGGATATGTTCACTGAGACGTGTAGA
AGACTTCGCATCATGAAAGGTTCAGAGGCTATTGGACTGGCTCCAAGGGC
CATGGAGAAGTGCAAGAACCGAACTTAGTGTCGCAAATATCTTGAAAGAC
TTAAAAAGGGAGAAAATTTGTTTTTTTCAGAATCCAAACACGTGAAAAGA
TGTTAGGCATTTTGTTCAAGGACCCTATTATTATATAAATGTTATCAAAT
ATCATAAGGTTTGCTGTATTTAATTACTTAATATGGGGAAAACATCCCTC
TACACAAAGATAGCACTGCAGACATATCCGTTCTACGTTTGTTTTAACAT
CTTATTTTGTTCCTCTTCACTTTTCCGGCGACCTTTTCTAGCAATCCCCC
ACACACCCGCCCCAGCCCCAATCCCCCGGCCCACGTGCGCCGCCGCCGCC
AAAAGCACGACAACCGAAAGGACCACCAAAACACCCAACACAAACAACCA
AAACACCAGCGAACACCACGAACCCAAGAACCACACCGCAGCAACAAAGA
ACCCACGCACACACGGGACAGTCGAGAACACGCCAGAGCTCAACAAAGGC
AGCCGCGAACAGAGCGCACCCCCCCCACCGCAAGAACTCGACGAGACCAG
GGCGCCGCCAACCCCAACCACAGCGACAGCGCAGCCCACCAGCGGGACCC
AACAAGAGAGAACCAGACCGACACGACAGCAGCCACAACAACACCAACAT
AGACTCTGACGATTATGCGGTACTGAGCACAACACCGAACGGCGCGCCAC
GGACACCACTGGCA
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