EY684818

Overview
NameEY684818
Unique NameEY684818
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length964
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY684818_ssr588 microsatellite EY684818_ssr588:588..599. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY684818 vs. ExPASy Swiss-Prot
Match: IAA12_ARATH (Auxin-responsive protein IAA12 OS=Arabidopsis thaliana GN=IAA12 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.040e-13
Identity = 39/70 (55.71%), Postives = 50/70 (71.43%), Query Frame = 3
Query:   54 GLPGQDGLSESRLMDLLHGS-EYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEK 260
            G+ G     + + + LL GS ++VLTYED++GDWMLVGDVPW MF  + +RLRIM  SEA GLAPR  E+
Sbjct:  161 GMTGTTCREKVKPLRLLDGSSDFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRIMGTSEASGLAPRRQEQ 230          
BLAST of EY684818 vs. ExPASy Swiss-Prot
Match: IAA2_ARATH (Auxin-responsive protein IAA2 OS=Arabidopsis thaliana GN=IAA2 PE=2 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.773e-13
Identity = 33/44 (75.00%), Postives = 39/44 (88.64%), Query Frame = 3
Query:  108 GSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGL 239
            GS +V TYED+DGDWMLVGDVPWDMF+ +C+RLRIMKGS+A  L
Sbjct:  127 GSGFVPTYEDKDGDWMLVGDVPWDMFSSSCKRLRIMKGSDAPAL 170          
BLAST of EY684818 vs. ExPASy Swiss-Prot
Match: IAA1_ARATH (Auxin-responsive protein IAA1 OS=Arabidopsis thaliana GN=IAA1 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 3.024e-13
Identity = 32/41 (78.05%), Postives = 38/41 (92.68%), Query Frame = 3
Query:  108 GSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEA 230
            GS +V TYED+DGDWMLVGDVPWDMF+ +C++LRIMKGSEA
Sbjct:  124 GSGFVPTYEDKDGDWMLVGDVPWDMFSSSCQKLRIMKGSEA 164          
BLAST of EY684818 vs. ExPASy Swiss-Prot
Match: IAA19_ARATH (Auxin-responsive protein IAA19 OS=Arabidopsis thaliana GN=IAA19 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.501e-12
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 3
Query:  114 EYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEA--IGLAPRAMEK 260
            EYV  YED+DGDWML GDVPW MF E+C+RLRIMK S+A   GL PR +++
Sbjct:  147 EYVTIYEDKDGDWMLAGDVPWGMFLESCKRLRIMKRSDATGFGLQPRGVDE 197          
BLAST of EY684818 vs. ExPASy Swiss-Prot
Match: IAA12_ORYSJ (Auxin-responsive protein IAA12 OS=Oryza sativa subsp. japonica GN=IAA12 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.560e-12
Identity = 34/50 (68.00%), Postives = 43/50 (86.00%), Query Frame = 3
Query:  111 SEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGL-APRAME 257
            SE+ +TY+D+DGD MLVGDVP+DMFT TC++LRIMK SEA GL +PR M+
Sbjct:  176 SEFAITYQDKDGDLMLVGDVPFDMFTSTCKKLRIMKRSEATGLGSPRQMK 225          
BLAST of EY684818 vs. ExPASy Swiss-Prot
Match: AUX22_SOYBN (Auxin-induced protein AUX22 OS=Glycine max GN=AUX22 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.560e-12
Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = 3
Query:  111 SEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEA--IGLAPRAMEK 260
            SE+V  YED+DGDWMLVGDVPW+MF E+C+RLRIMK S+A   GL P+   K
Sbjct:  136 SEHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMKKSDAKGFGLQPKGSLK 187          
BLAST of EY684818 vs. ExPASy Swiss-Prot
Match: IAA26_ORYSJ (Auxin-responsive protein IAA26 OS=Oryza sativa subsp. japonica GN=IAA26 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.704e-12
Identity = 35/79 (44.30%), Postives = 45/79 (56.96%), Query Frame = 3
Query:   15 MFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRA 251
            MF C TIG  D +G                   E+ + YED DGDWMLVGDVPW+MF  +C+R+R+M+  EA GL+  A
Sbjct:   79 MFYCSTIGLMDGYG-----------------EWEHAVVYEDGDGDWMLVGDVPWEMFVSSCKRMRVMRACEARGLSSNA 140          
BLAST of EY684818 vs. ExPASy Swiss-Prot
Match: IAA15_ARATH (Auxin-responsive protein IAA15 OS=Arabidopsis thaliana GN=IAA15 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.271e-11
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 3
Query:   87 RLMDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGL 239
            R+ +L    E+V TYED+DGD MLVGDVPW MF E+C+R+R+MK  +AIGL
Sbjct:  129 RVTELERKGEFVATYEDKDGDLMLVGDVPWMMFVESCKRMRLMKTGDAIGL 179          
BLAST of EY684818 vs. ExPASy Swiss-Prot
Match: AX22C_PHAAU (Auxin-induced protein 22C OS=Phaseolus aureus GN=AUX22C PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.271e-11
Identity = 30/42 (71.43%), Postives = 37/42 (88.10%), Query Frame = 3
Query:  111 SEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIG 236
            +E+V  YED+DGDWMLVGDVPW+MF E+C+RLRIMK S+A G
Sbjct:  129 AEHVPIYEDKDGDWMLVGDVPWEMFRESCKRLRIMKRSDAKG 170          
BLAST of EY684818 vs. ExPASy Swiss-Prot
Match: AX22A_PHAAU (Auxin-induced protein 22A OS=Phaseolus aureus GN=AUX22A PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.271e-11
Identity = 32/55 (58.18%), Postives = 41/55 (74.55%), Query Frame = 3
Query:  102 LHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEA--IGLAPRAMEK 260
            +   E+V  YED+DGDWMLVGDVPW+MF E+C+RLRIMK ++A   GL P+   K
Sbjct:  132 VENGEHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMKRADAKGFGLQPKGSLK 186          
The following BLAST results are available for this feature:
BLAST of EY684818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
IAA12_ARATH1.040e-1355.71Auxin-responsive protein IAA12 OS=Arabidopsis thal... [more]
IAA2_ARATH1.773e-1375.00Auxin-responsive protein IAA2 OS=Arabidopsis thali... [more]
IAA1_ARATH3.024e-1378.05Auxin-responsive protein IAA1 OS=Arabidopsis thali... [more]
IAA19_ARATH1.501e-1264.71Auxin-responsive protein IAA19 OS=Arabidopsis thal... [more]
IAA12_ORYSJ2.560e-1268.00Auxin-responsive protein IAA12 OS=Oryza sativa sub... [more]
AUX22_SOYBN2.560e-1265.38Auxin-induced protein AUX22 OS=Glycine max GN=AUX2... [more]
IAA26_ORYSJ5.704e-1244.30Auxin-responsive protein IAA26 OS=Oryza sativa sub... [more]
IAA15_ARATH1.271e-1160.78Auxin-responsive protein IAA15 OS=Arabidopsis thal... [more]
AX22C_PHAAU1.271e-1171.43Auxin-induced protein 22C OS=Phaseolus aureus GN=A... [more]
AX22A_PHAAU1.271e-1158.18Auxin-induced protein 22A OS=Phaseolus aureus GN=A... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-004-A10-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684818 ID=EY684818; Name=EY684818; organism=Citrus sinensis; type=EST; length=964bp
CCACGCGTCCGAAGATGTTCAGCTGCTTTACCATTGGGCAATGTGATTCT
CATGGTCTTCCGGGGCAAGACGGCCTAAGTGAGAGTCGTCTGATGGATCT
TCTCCATGGTTCTGAATATGTGCTTACATATGAAGACAGGGATGGTGACT
GGATGCTTGTTGGTGATGTCCCTTGGGATATGTTCACTGAGACGTGTAGA
AGACTTCGCATCATGAAAGGTTCAGAGGCTATTGGACTGGCTCCAAGGGC
CATGGAGAAGTGCAAGAACCGAACTTAGTGTCGCAAATATCTTGAAAGAC
TTAAAAAGGGAGAAAATTTGTTTTTTTCAGAATCCAAACACGTGAAAAGA
TGTTAGGCATTTTGTTCAAGGACCCTATTATTATATAAATGTTATCAAAT
ATCATAAGGTTTGCTGTATTTAATTACTTAATATGGGGAAAACATCCCTC
TACACAAAGATAGCACTGCAGACATATCCGTTCTACGTTTGTTTTAACAT
CTTATTTTGTTCCTCTTCACTTTTCCGGCGACCTTTTCTAGCAATCCCCC
ACACACCCGCCCCAGCCCCAATCCCCCGGCCCACGTGCGCCGCCGCCGCC
AAAAGCACGACAACCGAAAGGACCACCAAAACACCCAACACAAACAACCA
AAACACCAGCGAACACCACGAACCCAAGAACCACACCGCAGCAACAAAGA
ACCCACGCACACACGGGACAGTCGAGAACACGCCAGAGCTCAACAAAGGC
AGCCGCGAACAGAGCGCACCCCCCCCACCGCAAGAACTCGACGAGACCAG
GGCGCCGCCAACCCCAACCACAGCGACAGCGCAGCCCACCAGCGGGACCC
AACAAGAGAGAACCAGACCGACACGACAGCAGCCACAACAACACCAACAT
AGACTCTGACGATTATGCGGTACTGAGCACAACACCGAACGGCGCGCCAC
GGACACCACTGGCA
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