EY684818

Overview
NameEY684818
Unique NameEY684818
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length964
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY684818 vs. ExPASy Swiss-Prot
Match: IAA6_PEA (Auxin-induced protein IAA6 OS=Pisum sativum GN=IAA6 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.660e-11
Identity = 30/41 (73.17%), Postives = 36/41 (87.80%), Query Frame = 3 
Query:  114 EYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIG 236
            E+V  YED+DGDWMLVGDVPW+MF E+C+RLRIMK S+A G
Sbjct:  126 EHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDAKG 166
[Close]
BLAST of EY684818 vs. ExPASy Swiss-Prot
Match: IAA31_ORYSJ (Auxin-responsive protein IAA31 OS=Oryza sativa subsp. japonica GN=IAA31 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.167e-11
Identity = 31/43 (72.09%), Postives = 38/43 (88.37%), Query Frame = 3 
Query:  111 SEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGL 239
            S++ +TYED+DGD MLVGDVP++MF  TC+RLRIMKGSEA GL
Sbjct:  150 SDFAVTYEDKDGDLMLVGDVPFEMFISTCKRLRIMKGSEARGL 192
[Close]
BLAST of EY684818 vs. ExPASy Swiss-Prot
Match: IAA11_ARATH (Auxin-responsive protein IAA11 OS=Arabidopsis thaliana GN=IAA11 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.831e-11
Identity = 37/59 (62.71%), Postives = 42/59 (71.19%), Query Frame = 3 
Query:   69 DGLSESRLMDLLHGSE-YVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLA 242
            DG  E+ +  L  GS   VLTYED++GDWMLVGDVPW MF  + RRLRIMK SEA G A
Sbjct:  184 DGHMETPVKILPDGSSGLVLTYEDKEGDWMLVGDVPWGMFIGSVRRLRIMKTSEATGKA 242
[Close]
BLAST of EY684818 vs. ExPASy Swiss-Prot
Match: IAA6_ARATH (Auxin-responsive protein IAA6 OS=Arabidopsis thaliana GN=IAA6 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.697e-11
Identity = 28/41 (68.29%), Postives = 35/41 (85.37%), Query Frame = 3 
Query:  114 EYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIG 236
            EY++ YED+D DWMLVGDVPW MF E+C+RLRI+K S+A G
Sbjct:  143 EYIIIYEDKDRDWMLVGDVPWQMFKESCKRLRIVKRSDATG 183
The following BLAST results are available for this feature:
BLAST of EY684818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
IAA6_PEA1.660e-1173.17Auxin-induced protein IAA6 OS=Pisum sativum GN=IAA... [more]
IAA31_ORYSJ2.167e-1172.09Auxin-responsive protein IAA31 OS=Oryza sativa sub... [more]
IAA11_ARATH2.831e-1162.71Auxin-responsive protein IAA11 OS=Arabidopsis thal... [more]
IAA6_ARATH3.697e-1168.29Auxin-responsive protein IAA6 OS=Arabidopsis thali... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-004-A10-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684818 ID=EY684818; Name=EY684818; organism=Citrus sinensis; type=EST; length=964bp
CCACGCGTCCGAAGATGTTCAGCTGCTTTACCATTGGGCAATGTGATTCT
CATGGTCTTCCGGGGCAAGACGGCCTAAGTGAGAGTCGTCTGATGGATCT
TCTCCATGGTTCTGAATATGTGCTTACATATGAAGACAGGGATGGTGACT
GGATGCTTGTTGGTGATGTCCCTTGGGATATGTTCACTGAGACGTGTAGA
AGACTTCGCATCATGAAAGGTTCAGAGGCTATTGGACTGGCTCCAAGGGC
CATGGAGAAGTGCAAGAACCGAACTTAGTGTCGCAAATATCTTGAAAGAC
TTAAAAAGGGAGAAAATTTGTTTTTTTCAGAATCCAAACACGTGAAAAGA
TGTTAGGCATTTTGTTCAAGGACCCTATTATTATATAAATGTTATCAAAT
ATCATAAGGTTTGCTGTATTTAATTACTTAATATGGGGAAAACATCCCTC
TACACAAAGATAGCACTGCAGACATATCCGTTCTACGTTTGTTTTAACAT
CTTATTTTGTTCCTCTTCACTTTTCCGGCGACCTTTTCTAGCAATCCCCC
ACACACCCGCCCCAGCCCCAATCCCCCGGCCCACGTGCGCCGCCGCCGCC
AAAAGCACGACAACCGAAAGGACCACCAAAACACCCAACACAAACAACCA
AAACACCAGCGAACACCACGAACCCAAGAACCACACCGCAGCAACAAAGA
ACCCACGCACACACGGGACAGTCGAGAACACGCCAGAGCTCAACAAAGGC
AGCCGCGAACAGAGCGCACCCCCCCCACCGCAAGAACTCGACGAGACCAG
GGCGCCGCCAACCCCAACCACAGCGACAGCGCAGCCCACCAGCGGGACCC
AACAAGAGAGAACCAGACCGACACGACAGCAGCCACAACAACACCAACAT
AGACTCTGACGATTATGCGGTACTGAGCACAACACCGAACGGCGCGCCAC
GGACACCACTGGCA
back to top