EY684808 | Citrus Genome Database

Overview


Name	EY684808
Unique Name	EY684808
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	873

Libraries


Library Name	Type
Sweet orange bark, greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB1A_CANFA (Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3)

HSP 1 Score: 173.326 bits (438), Expect = 5.462e-45
Identity = 83/91 (91.21%), Postives = 88/91 (96.70%), Query Frame = 1

Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDFKIRT+ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVT
Sbjct:    4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT 94

HSP 2 Score: 29.6462 bits (65), Expect = 5.462e-45
Identity = 13/31 (41.94%), Postives = 20/31 (64.52%), Query Frame = 2

Query:  380 EMDSFDNVTHWLNEIDR*ANDSECKVSTWGK 472
            + +SF+NV  WL EIDR A+++  K+    K
Sbjct:   95 DQESFNNVKQWLQEIDRYASENVNKLLVGNK 125

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 5.463e-45
Identity = 83/91 (91.21%), Postives = 88/91 (96.70%), Query Frame = 1

Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDFKIRT+ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVT
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT 91

HSP 2 Score: 29.6462 bits (65), Expect = 5.463e-45
Identity = 13/31 (41.94%), Postives = 20/31 (64.52%), Query Frame = 2

Query:  380 EMDSFDNVTHWLNEIDR*ANDSECKVSTWGK 472
            + +SF+NV  WL EIDR A+++  K+    K
Sbjct:   92 DQESFNNVKQWLQEIDRYASENVNKLLVGNK 122

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 7.118e-45
Identity = 84/94 (89.36%), Postives = 89/94 (94.68%), Query Frame = 1

Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT*DG 387
            M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDFKIRT+ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVT  G
Sbjct:    4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQG 97

HSP 2 Score: 28.4906 bits (62), Expect = 7.118e-45
Identity = 13/31 (41.94%), Postives = 19/31 (61.29%), Query Frame = 2

Query:  380 EMDSFDNVTHWLNEIDR*ANDSECKVSTWGK 472
            +  SF+NV  WL EIDR A+++  K+    K
Sbjct:   95 DQGSFNNVKQWLQEIDRYASENVNKLLVGNK 125

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 9.276e-45
Identity = 82/91 (90.11%), Postives = 88/91 (96.70%), Query Frame = 1

Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            M+ +YDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDFKIRT+ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVT
Sbjct:    4 MNPDYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT 94

HSP 2 Score: 30.0314 bits (66), Expect = 9.276e-45
Identity = 13/35 (37.14%), Postives = 22/35 (62.86%), Query Frame = 2

Query:  380 EMDSFDNVTHWLNEIDR*ANDSECKVSTWGKKAIS 484
            + +SF+NV  WL EIDR A+++  K+    K  ++
Sbjct:   95 DQESFNNVKQWLQEIDRYASENVNKLLVGNKSDLT 129

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 9.279e-45
Identity = 83/91 (91.21%), Postives = 88/91 (96.70%), Query Frame = 1

Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDFKIRT+ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVT
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT 91

HSP 2 Score: 28.8758 bits (63), Expect = 9.279e-45
Identity = 13/35 (37.14%), Postives = 22/35 (62.86%), Query Frame = 2

Query:  380 EMDSFDNVTHWLNEIDR*ANDSECKVSTWGKKAIS 484
            + +SF+NV  WL+EIDR A ++  K+    K  ++
Sbjct:   92 DQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLT 126

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.053e-44
Identity = 83/91 (91.21%), Postives = 87/91 (95.60%), Query Frame = 1

Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDFKIRTVELDGK IKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVT
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT 91

HSP 2 Score: 29.261 bits (64), Expect = 2.053e-44
Identity = 13/35 (37.14%), Postives = 22/35 (62.86%), Query Frame = 2

Query:  380 EMDSFDNVTHWLNEIDR*ANDSECKVSTWGKKAIS 484
            + +SF+NV  WL EIDR A+++  K+    K  ++
Sbjct:   92 DQESFNNVKQWLAEIDRYASENVNKLLVGNKSDLT 126

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB1B_PONAB (Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1B PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 2.054e-44
Identity = 83/91 (91.21%), Postives = 88/91 (96.70%), Query Frame = 1

Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDFKIRT+ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVT
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT 91

HSP 2 Score: 27.7202 bits (60), Expect = 2.054e-44
Identity = 12/35 (34.29%), Postives = 21/35 (60.00%), Query Frame = 2

Query:  380 EMDSFDNVTHWLNEIDR*ANDSECKVSTWGKKAIS 484
            + +S+ NV  WL EIDR A+++  K+    K  ++
Sbjct:   92 DQESYANVKQWLQEIDRYASENVNKLLVGNKSDLT 126

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB1B_MOUSE (Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 2.054e-44
Identity = 83/91 (91.21%), Postives = 88/91 (96.70%), Query Frame = 1

Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDFKIRT+ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVT
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT 91

HSP 2 Score: 27.7202 bits (60), Expect = 2.054e-44
Identity = 12/35 (34.29%), Postives = 21/35 (60.00%), Query Frame = 2

Query:  380 EMDSFDNVTHWLNEIDR*ANDSECKVSTWGKKAIS 484
            + +S+ NV  WL EIDR A+++  K+    K  ++
Sbjct:   92 DQESYANVKQWLQEIDRYASENVNKLLVGNKSDLT 126

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB1B_HUMAN (Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 2.054e-44
Identity = 83/91 (91.21%), Postives = 88/91 (96.70%), Query Frame = 1

Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDFKIRT+ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVT
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT 91

HSP 2 Score: 27.7202 bits (60), Expect = 2.054e-44
Identity = 12/35 (34.29%), Postives = 21/35 (60.00%), Query Frame = 2

Query:  380 EMDSFDNVTHWLNEIDR*ANDSECKVSTWGKKAIS 484
            + +S+ NV  WL EIDR A+++  K+    K  ++
Sbjct:   92 DQESYANVKQWLQEIDRYASENVNKLLVGNKSDLT 126

[Close]

BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB1B_BOVIN (Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 2.054e-44
Identity = 83/91 (91.21%), Postives = 88/91 (96.70%), Query Frame = 1

Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+Y +SYISTIGVDFKIRT+ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVT
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT 91

HSP 2 Score: 27.7202 bits (60), Expect = 2.054e-44
Identity = 12/35 (34.29%), Postives = 21/35 (60.00%), Query Frame = 2

Query:  380 EMDSFDNVTHWLNEIDR*ANDSECKVSTWGKKAIS 484
            + +S+ NV  WL EIDR A+++  K+    K  ++
Sbjct:   92 DQESYANVKQWLQEIDRYASENVNKLLVGNKSDLT 126

The following BLAST results are available for this feature:

BLAST of EY684808 vs. ExPASy Swiss-Prot

BLAST of EY684808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397


Match Name	E-value	Identity	Description
RAB1A_CANFA	5.462e-45	91.21	Ras-related protein Rab-1A OS=Canis familiaris GN=...	[more]
RAB1_DISOM	5.463e-45	91.21	Ras-related protein ORAB-1 OS=Discopyge ommata PE=...	[more]
RAB1A_PIG	7.118e-45	89.36	Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A ...	[more]
RAB1A_LYMST	9.276e-45	90.11	Ras-related protein Rab-1A OS=Lymnaea stagnalis GN...	[more]
YPT1_PHYIN	9.279e-45	91.21	Ras-like GTP-binding protein YPT1 OS=Phytophthora ...	[more]
YPTV1_VOLCA	2.053e-44	91.21	GTP-binding protein yptV1 OS=Volvox carteri GN=YPT...	[more]
RAB1B_PONAB	2.054e-44	91.21	Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1...	[more]
RAB1B_MOUSE	2.054e-44	91.21	Ras-related protein Rab-1B OS=Mus musculus GN=Rab1...	[more]
RAB1B_HUMAN	2.054e-44	91.21	Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1...	[more]
RAB1B_BOVIN	2.054e-44	91.21	Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B ...	[more]

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Properties


Property Name	Value
Genbank description	CS00-C2-003-003-H09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY684808 ID=EY684808; Name=EY684808; organism=Citrus sinensis; type=EST; length=873bp
CGACACAGCGCAAACAAACTTTCCCTTTCATTTTCTTTTTCTCTTTCTCG
CTCTCCAAACAGGGCAAACGGACCGTCGCAAGATTCTTTACTTCCATCCA
AAATCATGAGCAACGAATACGACTATCTGTTCAAGCTGTTGCTTATCGGA
GACTCGTCCGTCGGGAAGTCCTGCCTGCTGCTCCGATTTGCTGATGATTC
TTATGTCGACAGCTACATCAGTACCATTGGAGTTGATTTTAAAATAAGAA
CTGTGGAGCTGGATGGGAAGACGATCAAACTGCAGATTTGGGACACTGCT
GGACAGGAGCGATTCAGGACTATAACTAGCAGTTATTACCGAGGAGCCCA
TGGAATCATAATTGTCTATGACGTAACCTGAGATGGACAGCTTCGATAAT
GTCACGCACTGGTTGAATGAGATTGACAGATAGGCAAATGACAGTGAATG
CAAAGTATCTACGTGGGGAAAAAAGGCGATTAGTTGAGAACACGAGGGAC
AGACCGCACCAGCACCCGGGCACTAGCCAGACCCACTGCGCGCGCCATCC
CCTGGTAAAGGAACGCCGAAAATGACAGCACGGGGGGGACGGGGCTCGCC
GCGGGACTCGTGCCCACGGCCACGGGGGCGACGGCACGGGCGCCAACCGC
GGGACCGAGGGACAGAGCGAGACGACAGAGAAGGGCGAGCGCCCACCAGA
ACAAGCGACGACCGGCAGCCCCCGCCCACACAACCCCGGTAGAACAGACG
ACAGACAGACGACCAGGGCAACGACGAAACCCGAACGAAAGATGAAGGCA
GCACAAACACACCAACCTTAACCACAGCACCAATACGCACCAAAGTACAA
CCAAGACAACAGAGGGCAACAGC