EY684808

Overview
NameEY684808
Unique NameEY684808
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RABF1_DICDI (Ras-related protein RabF1 OS=Dictyostelium discoideum GN=rabF1-1 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.552e-27
Identity = 55/91 (60.44%), Postives = 76/91 (83.52%), Query Frame = 1
Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            MS EY++LFK +L GDS VGK+ +L R  DD++ +++I TIG++FKI+TV ++GK IKLQIWDTAG++RFR + +S+YRG HG+IIVYDVT
Sbjct:    1 MSKEYEHLFKFVLAGDSGVGKTSILFRITDDTFTETHI-TIGIEFKIKTVYIEGKPIKLQIWDTAGEKRFR-VHNSHYRGCHGVIIVYDVT 89          

HSP 2 Score: 26.1794 bits (56), Expect = 1.552e-27
Identity = 10/23 (43.48%), Postives = 16/23 (69.57%), Query Frame = 2
Query:  389 SFDNVTHWLNEIDR*ANDSECKV 457
            SF+NV  W+ +I R AN++  K+
Sbjct:   93 SFENVPSWIEDIRRYANENVIKI 115          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB19_MOUSE (Ras-related protein Rab-19 OS=Mus musculus GN=Rab19 PE=2 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 1.868e-27
Identity = 55/94 (58.51%), Postives = 72/94 (76.60%), Query Frame = 1
Query:   97 SKIMSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            S+      DYLFK++LIGDS+VGK+C++  F    Y +S  +TIGVDF +R++E+DGK +K+Q+WDTAGQERFRTIT SYYR AH  II YD+T
Sbjct:    7 SRTSDENVDYLFKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSLEIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLT 100          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB19_RAT (Ras-related protein Rab-19 OS=Rattus norvegicus GN=Rab19 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.439e-27
Identity = 54/94 (57.45%), Postives = 73/94 (77.66%), Query Frame = 1
Query:   97 SKIMSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            ++ +    DYLFK++LIGDS+VGK+C++  F    Y +S  +TIGVDF +R++E+DGK +K+Q+WDTAGQERFRTIT SYYR AH  II YD+T
Sbjct:    7 ARTVDENVDYLFKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSLEIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLT 100          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB26_RAT (Ras-related protein Rab-26 OS=Rattus norvegicus GN=Rab26 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.610e-27
Identity = 52/105 (49.52%), Postives = 79/105 (75.24%), Query Frame = 1
Query:   67 NGPSQDSLLPSKIMSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYV-DSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            NGP Q          + YD  FK++L+GDS VGK+CLL+RF D +++  ++IST+G+DF+ + +++DG  +KLQIWDTAGQERFR++T +YYR AH ++++YD+T
Sbjct:   44 NGPPQSGRPSLGGTGDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDIT 148          

HSP 2 Score: 24.6386 bits (52), Expect = 2.610e-27
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 2
Query:  386 DSFDNVTHWLNEI 424
            DSFDN+  WL EI
Sbjct:  151 DSFDNIQAWLTEI 163          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB43_HUMAN (Ras-related protein Rab-43 OS=Homo sapiens GN=RAB43 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.186e-27
Identity = 54/88 (61.36%), Postives = 73/88 (82.95%), Query Frame = 1
Query:  115 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            +YD+LFKL+L+GD+SVGK+C++ RF   ++ +   STIGVDF ++T+E+ GK +KLQIWDTAGQERFRTIT SYYR A+G I+ YD+T
Sbjct:   14 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDIT 101          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB19_XENLA (Ras-related protein Rab-19 OS=Xenopus laevis GN=rab19 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.186e-27
Identity = 52/87 (59.77%), Postives = 73/87 (83.91%), Query Frame = 1
Query:  118 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            +D+LFK++LIGDS+VGK+C++ RF    ++D+  +TIGVDF +R++ ++GK +K+Q+WDTAGQERFRTIT SYYR AHG II YD+T
Sbjct:   12 FDFLFKIILIGDSNVGKTCVVHRFQSGIFMDNQQNTIGVDFTVRSLNINGKKVKVQVWDTAGQERFRTITQSYYRSAHGAIIAYDIT 98          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB19_HUMAN (Ras-related protein Rab-19 OS=Homo sapiens GN=RAB19 PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 3.186e-27
Identity = 52/94 (55.32%), Postives = 73/94 (77.66%), Query Frame = 1
Query:   97 SKIMSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            ++     +DYLFK++LIGDS+VGK+C++  F    Y ++  +TIGVDF +R++++DGK +K+Q+WDTAGQERFRTIT SYYR AH  II YD+T
Sbjct:    7 ARAADENFDYLFKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLDIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLT 100          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB26_BOVIN (Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 5.759e-27
Identity = 54/105 (51.43%), Postives = 79/105 (75.24%), Query Frame = 1
Query:   67 NGPSQDSLLPSKIMSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYV-DSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            NGP Q          + YD  FK++L+GDS VGK+CLL+RF D +++  ++IST+G+DF+ + V++DG  +KLQIWDTAGQERFR++T +YYR AH ++++YDVT
Sbjct:   43 NGPPQPGRSSVGGGGDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVVDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVT 147          

HSP 2 Score: 22.7126 bits (47), Expect = 5.759e-27
Identity = 9/18 (50.00%), Postives = 11/18 (61.11%), Query Frame = 2
Query:  389 SFDNVTHWLNEIDR*AND 442
            SFD++  WL EI   A D
Sbjct:  151 SFDSIQAWLTEIQEHAQD 168          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 9.799e-27
Identity = 55/91 (60.44%), Postives = 73/91 (80.22%), Query Frame = 1
Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            + +EYDYLFK++LIGDS VGKS +L RF  + +     STIGV+F  RT++++GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T
Sbjct:    5 VDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIT 95          

HSP 2 Score: 22.3274 bits (46), Expect = 9.799e-27
Identity = 12/30 (40.00%), Postives = 16/30 (53.33%), Query Frame = 2
Query:  389 SFDNVTHWLNEIDR*ANDSECKVSTWGKKA 478
            +FDNV  WL E+ R   DS   +   G K+
Sbjct:   99 TFDNVQRWLREL-RDHADSNIVIMMAGNKS 127          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 9.802e-27
Identity = 55/91 (60.44%), Postives = 73/91 (80.22%), Query Frame = 1
Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            + +EYDYLFK++LIGDS VGKS +L RF  + +     STIGV+F  RT++++GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T
Sbjct:    5 VDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIT 95          

HSP 2 Score: 22.3274 bits (46), Expect = 9.802e-27
Identity = 12/30 (40.00%), Postives = 16/30 (53.33%), Query Frame = 2
Query:  389 SFDNVTHWLNEIDR*ANDSECKVSTWGKKA 478
            +FDNV  WL E+ R   DS   +   G K+
Sbjct:   99 TFDNVQRWLREL-RDHADSNIVIMMAGNKS 127          
The following BLAST results are available for this feature:
BLAST of EY684808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
RABF1_DICDI1.552e-2760.44Ras-related protein RabF1 OS=Dictyostelium discoid... [more]
RAB19_MOUSE1.868e-2758.51Ras-related protein Rab-19 OS=Mus musculus GN=Rab1... [more]
RAB19_RAT2.439e-2757.45Ras-related protein Rab-19 OS=Rattus norvegicus GN... [more]
RAB26_RAT2.610e-2749.52Ras-related protein Rab-26 OS=Rattus norvegicus GN... [more]
RAB43_HUMAN3.186e-2761.36Ras-related protein Rab-43 OS=Homo sapiens GN=RAB4... [more]
RAB19_XENLA3.186e-2759.77Ras-related protein Rab-19 OS=Xenopus laevis GN=ra... [more]
RAB19_HUMAN3.186e-2755.32Ras-related protein Rab-19 OS=Homo sapiens GN=RAB1... [more]
RAB26_BOVIN5.759e-2751.43Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 ... [more]
RB11C_LOTJA9.799e-2760.44Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
RB2BV_BETVU9.802e-2760.44Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-H09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684808 ID=EY684808; Name=EY684808; organism=Citrus sinensis; type=EST; length=873bp
CGACACAGCGCAAACAAACTTTCCCTTTCATTTTCTTTTTCTCTTTCTCG
CTCTCCAAACAGGGCAAACGGACCGTCGCAAGATTCTTTACTTCCATCCA
AAATCATGAGCAACGAATACGACTATCTGTTCAAGCTGTTGCTTATCGGA
GACTCGTCCGTCGGGAAGTCCTGCCTGCTGCTCCGATTTGCTGATGATTC
TTATGTCGACAGCTACATCAGTACCATTGGAGTTGATTTTAAAATAAGAA
CTGTGGAGCTGGATGGGAAGACGATCAAACTGCAGATTTGGGACACTGCT
GGACAGGAGCGATTCAGGACTATAACTAGCAGTTATTACCGAGGAGCCCA
TGGAATCATAATTGTCTATGACGTAACCTGAGATGGACAGCTTCGATAAT
GTCACGCACTGGTTGAATGAGATTGACAGATAGGCAAATGACAGTGAATG
CAAAGTATCTACGTGGGGAAAAAAGGCGATTAGTTGAGAACACGAGGGAC
AGACCGCACCAGCACCCGGGCACTAGCCAGACCCACTGCGCGCGCCATCC
CCTGGTAAAGGAACGCCGAAAATGACAGCACGGGGGGGACGGGGCTCGCC
GCGGGACTCGTGCCCACGGCCACGGGGGCGACGGCACGGGCGCCAACCGC
GGGACCGAGGGACAGAGCGAGACGACAGAGAAGGGCGAGCGCCCACCAGA
ACAAGCGACGACCGGCAGCCCCCGCCCACACAACCCCGGTAGAACAGACG
ACAGACAGACGACCAGGGCAACGACGAAACCCGAACGAAAGATGAAGGCA
GCACAAACACACCAACCTTAACCACAGCACCAATACGCACCAAAGTACAA
CCAAGACAACAGAGGGCAACAGC
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