EY684808

Overview
NameEY684808
Unique NameEY684808
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 119.013 bits (297), Expect = 1.276e-26
Identity = 56/91 (61.54%), Postives = 71/91 (78.02%), Query Frame = 1
Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            +  EYDYLFK++LIGDS VGKS +L RF  + +     STIGV+F  RT +++GKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+T
Sbjct:    5 VDQEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIT 95          

HSP 2 Score: 22.3274 bits (46), Expect = 1.276e-26
Identity = 12/30 (40.00%), Postives = 16/30 (53.33%), Query Frame = 2
Query:  389 SFDNVTHWLNEIDR*ANDSECKVSTWGKKA 478
            +FDNV  WL E+ R   DS   +   G K+
Sbjct:   99 TFDNVLRWLREL-RDHADSNIVIMMAGNKS 127          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RABG2_DICDI (Ras-related protein RabG2 OS=Dictyostelium discoideum GN=rabG2 PE=3 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.581e-26
Identity = 53/84 (63.10%), Postives = 72/84 (85.71%), Query Frame = 1
Query:  127 LFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            +FK+LLIGDS+VGK+ LLLRFAD+S+ ++ ++   VD+K + + +DG+T  LQIWDTAGQERFRTITSS+YRGAHG+++ YDVT
Sbjct:    6 VFKILLIGDSAVGKTSLLLRFADNSFQETSVNMTSVDYKNKNIVIDGRTFNLQIWDTAGQERFRTITSSFYRGAHGVLVCYDVT 89          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB19_XENTR (Ras-related protein Rab-19 OS=Xenopus tropicalis GN=rab19 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.162e-26
Identity = 51/94 (54.26%), Postives = 73/94 (77.66%), Query Frame = 1
Query:   97 SKIMSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            + +  + +D+LFK++LIGDS+VGK+C++ RF    +  +  +TIGVDF +R + ++GK +K+Q+WDTAGQERFRTIT SYYR AHG II YD+T
Sbjct:    5 NSLEDDPFDFLFKIILIGDSNVGKTCVVHRFQSGVFAHNQQNTIGVDFTVRNMNINGKKVKVQVWDTAGQERFRTITQSYYRSAHGAIIAYDIT 98          

HSP 2 Score: 21.1718 bits (43), Expect = 2.162e-26
Identity = 6/14 (42.86%), Postives = 11/14 (78.57%), Query Frame = 2
Query:  389 SFDNVTHWLNEIDR 430
            SF++V HW+ E ++
Sbjct:  102 SFESVPHWIYEAEK 115          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.813e-26
Identity = 54/91 (59.34%), Postives = 72/91 (79.12%), Query Frame = 1
Query:  106 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            + +EYDYLFK++LIGDS VGKS +L RF  + +     STIGV+F  RT++++GKT+K QIWDTAGQER+R ITS+YYRGA G ++ YD+T
Sbjct:    5 VDHEYDYLFKMVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLFYDIT 95          

HSP 2 Score: 22.7126 bits (47), Expect = 2.813e-26
Identity = 12/30 (40.00%), Postives = 16/30 (53.33%), Query Frame = 2
Query:  389 SFDNVTHWLNEIDR*ANDSECKVSTWGKKA 478
            +FDNV  WL E+ R   DS   +   G K+
Sbjct:   99 TFDNVQRWLREL-RDHRDSNIVIILAGNKS 127          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.523e-26
Identity = 56/89 (62.92%), Postives = 72/89 (80.90%), Query Frame = 1
Query:  112 NEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            ++YDYLFK++LIGDS VGKS LL RF  + +     STIGV+F  R++++DGKTIK QIWDTAGQER+R ITS+YYRGA G ++VYD+T
Sbjct:    7 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIT 95          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 3.664e-26
Identity = 57/89 (64.04%), Postives = 68/89 (76.40%), Query Frame = 1
Query:  112 NEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            +EYDYLFK +LIGDS VGKS LL+RF  + +     STIGV+F  R + LD K IK QIWDTAGQER+R ITS+YYRGA G +IVYD+T
Sbjct:    5 DEYDYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDIT 93          

HSP 2 Score: 23.483 bits (49), Expect = 3.664e-26
Identity = 13/32 (40.62%), Postives = 16/32 (50.00%), Query Frame = 2
Query:  380 EMDSFDNVTHWLNEIDR*ANDSECKVSTWGKK 475
            +  SFDNV  WL E+   A DS   +   G K
Sbjct:   94 KQSSFDNVGRWLKELREHA-DSNIVIMLVGNK 124          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RB18B_DANRE (Ras-related protein Rab-18-B OS=Danio rerio GN=rab18b PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.668e-26
Identity = 54/82 (65.85%), Postives = 67/82 (81.71%), Query Frame = 1
Query:  133 KLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            K+L+IG+S VGKS LLLRF DD++     +TIGVDFK++T+ +DG   KL IWDTAGQERFRT+T SYYRGA G+I+VYDVT
Sbjct:   10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIAIDGNRAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVT 91          

HSP 2 Score: 21.1718 bits (43), Expect = 3.668e-26
Identity = 6/14 (42.86%), Postives = 11/14 (78.57%), Query Frame = 2
Query:  386 DSFDNVTHWLNEID 427
            D+F  + +WLNE++
Sbjct:   94 DTFTKLENWLNELE 107          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: YPT32_YEAST (GTP-binding protein YPT32/YPT11 OS=Saccharomyces cerevisiae GN=YPT32 PE=1 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 4.601e-26
Identity = 64/110 (58.18%), Postives = 76/110 (69.09%), Query Frame = 1
Query:  106 MSNE-----YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT*DGQLR*C-HALVE 417
            MSNE     YDYLFK++LIGDS VGKS LL RF  D +     STIGV+F  RT+E++ K IK QIWDTAGQER+R ITS+YYRGA G +IVYD++       C H L E
Sbjct:    1 MSNEDYGYDYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTE 110          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB43_RAT (Ras-related protein Rab-43 OS=Rattus norvegicus GN=Rab43 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.601e-26
Identity = 53/87 (60.92%), Postives = 71/87 (81.61%), Query Frame = 1
Query:  118 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            YD+LFKL+L+GD+SVGK+C++ RF   ++     STIGVDF ++T+E+ GK +KLQIWDTAGQERFRTIT SYYR A+G I+ YD++
Sbjct:   13 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDIS 99          
BLAST of EY684808 vs. ExPASy Swiss-Prot
Match: RAB43_MOUSE (Ras-related protein Rab-43 OS=Mus musculus GN=Rab43 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.601e-26
Identity = 53/87 (60.92%), Postives = 71/87 (81.61%), Query Frame = 1
Query:  118 YDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 378
            YD+LFKL+L+GD+SVGK+C++ RF   ++     STIGVDF ++T+E+ GK +KLQIWDTAGQERFRTIT SYYR A+G I+ YD++
Sbjct:   13 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDIS 99          
The following BLAST results are available for this feature:
BLAST of EY684808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
RAA2C_ARATH1.276e-2661.54Ras-related protein RABA2c OS=Arabidopsis thaliana... [more]
RABG2_DICDI1.581e-2663.10Ras-related protein RabG2 OS=Dictyostelium discoid... [more]
RAB19_XENTR2.162e-2654.26Ras-related protein Rab-19 OS=Xenopus tropicalis G... [more]
RB11A_TOBAC2.813e-2659.34Ras-related protein Rab11A OS=Nicotiana tabacum GN... [more]
YPTC6_CHLRE3.523e-2662.92Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
YPT3_SCHPO3.664e-2664.04GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]
RB18B_DANRE3.668e-2665.85Ras-related protein Rab-18-B OS=Danio rerio GN=rab... [more]
YPT32_YEAST4.601e-2658.18GTP-binding protein YPT32/YPT11 OS=Saccharomyces c... [more]
RAB43_RAT4.601e-2660.92Ras-related protein Rab-43 OS=Rattus norvegicus GN... [more]
RAB43_MOUSE4.601e-2660.92Ras-related protein Rab-43 OS=Mus musculus GN=Rab4... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-H09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684808 ID=EY684808; Name=EY684808; organism=Citrus sinensis; type=EST; length=873bp
CGACACAGCGCAAACAAACTTTCCCTTTCATTTTCTTTTTCTCTTTCTCG
CTCTCCAAACAGGGCAAACGGACCGTCGCAAGATTCTTTACTTCCATCCA
AAATCATGAGCAACGAATACGACTATCTGTTCAAGCTGTTGCTTATCGGA
GACTCGTCCGTCGGGAAGTCCTGCCTGCTGCTCCGATTTGCTGATGATTC
TTATGTCGACAGCTACATCAGTACCATTGGAGTTGATTTTAAAATAAGAA
CTGTGGAGCTGGATGGGAAGACGATCAAACTGCAGATTTGGGACACTGCT
GGACAGGAGCGATTCAGGACTATAACTAGCAGTTATTACCGAGGAGCCCA
TGGAATCATAATTGTCTATGACGTAACCTGAGATGGACAGCTTCGATAAT
GTCACGCACTGGTTGAATGAGATTGACAGATAGGCAAATGACAGTGAATG
CAAAGTATCTACGTGGGGAAAAAAGGCGATTAGTTGAGAACACGAGGGAC
AGACCGCACCAGCACCCGGGCACTAGCCAGACCCACTGCGCGCGCCATCC
CCTGGTAAAGGAACGCCGAAAATGACAGCACGGGGGGGACGGGGCTCGCC
GCGGGACTCGTGCCCACGGCCACGGGGGCGACGGCACGGGCGCCAACCGC
GGGACCGAGGGACAGAGCGAGACGACAGAGAAGGGCGAGCGCCCACCAGA
ACAAGCGACGACCGGCAGCCCCCGCCCACACAACCCCGGTAGAACAGACG
ACAGACAGACGACCAGGGCAACGACGAAACCCGAACGAAAGATGAAGGCA
GCACAAACACACCAACCTTAACCACAGCACCAATACGCACCAAAGTACAA
CCAAGACAACAGAGGGCAACAGC
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